Caprin1 (cell cycle associated protein 1) - Rat Genome Database

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Gene: Caprin1 (cell cycle associated protein 1) Rattus norvegicus
Analyze
Symbol: Caprin1
Name: cell cycle associated protein 1
RGD ID: 1305707
Description: Enables RNA binding activity. Involved in negative regulation of translation. Located in P-body and cytoplasmic stress granule. Is active in glutamatergic synapse and postsynapse. Orthologous to human CAPRIN1 (cell cycle associated protein 1); INTERACTS WITH 2,4-dibromophenyl 2,4,5-tribromophenyl ether; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: caprin-1; cytoplasmic activation- and proliferation-associated protein 1; glycosyl-phosphatidyl-inositol-anchored protein p137-like; GPI p137; GPI-anchored membrane protein 1; GPI-anchored protein p137; GPI-p137; Gpiap1; LOC362173; MGC124904; MGC125054; p137GPI; RNA granule protein 105; rng105
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Caprin1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2390,152,305 - 90,230,447 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,153,620 - 90,230,502 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,647,702 - 93,679,513 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03102,246,781 - 102,278,592 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03100,078,070 - 100,109,864 (-)NCBIRnor_WKY
Rnor_6.0393,701,830 - 93,789,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,702,487 - 93,789,617 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,342,429 - 100,430,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,062,097 - 89,093,093 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,958,538 - 88,988,864 (-)NCBI
Celera389,222,579 - 89,254,302 (-)NCBICelera
Cytogenetic Map3q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-methoxyethanol  (EXP)
2-methylcholine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzatropine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
caffeine  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
Cuprizon  (ISO)
D-glucitol  (ISO)
dibenz[a,h]anthracene  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
emetine  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
glafenine  (EXP)
GW 4064  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
omeprazole  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (EXP)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
PhIP  (EXP)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell leading edge  (ISO,ISS)
cytoplasm  (IBA,IEA,ISO)
cytoplasmic stress granule  (IDA,ISO)
cytosol  (IEA,ISO)
dendrite  (IEA)
glutamatergic synapse  (IDA)
lamellipodium  (IEA)
P-body  (IDA)
postsynapse  (IDA)
synapse  (ISO)

Molecular Function
protein binding  (ISO)
RNA binding  (IBA,IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. RNA granule protein 140 (RNG140), a paralog of RNG105 localized to distinct RNA granules in neuronal dendrites in the adult vertebrate brain. Shiina N and Tokunaga M, J Biol Chem. 2010 Jul 30;285(31):24260-9. doi: 10.1074/jbc.M110.108944. Epub 2010 Jun 1.
5. A novel RNA-binding protein in neuronal RNA granules: regulatory machinery for local translation. Shiina N, etal., J Neurosci. 2005 Apr 27;25(17):4420-34. doi: 10.1523/JNEUROSCI.0382-05.2005.
Additional References at PubMed
PMID:12477932   PMID:16452087   PMID:19946888   PMID:21933836   PMID:22658674   PMID:22681889   PMID:22871113   PMID:28733330   PMID:32360748  


Genomics

Comparative Map Data
Caprin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2390,152,305 - 90,230,447 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl390,153,620 - 90,230,502 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx393,647,702 - 93,679,513 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03102,246,781 - 102,278,592 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03100,078,070 - 100,109,864 (-)NCBIRnor_WKY
Rnor_6.0393,701,830 - 93,789,580 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl393,702,487 - 93,789,617 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03100,342,429 - 100,430,355 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4389,062,097 - 89,093,093 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1388,958,538 - 88,988,864 (-)NCBI
Celera389,222,579 - 89,254,302 (-)NCBICelera
Cytogenetic Map3q32NCBI
CAPRIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381134,051,731 - 34,102,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1134,051,731 - 34,102,610 (+)EnsemblGRCh38hg38GRCh38
GRCh371134,073,278 - 34,124,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361134,029,806 - 34,080,733 (+)NCBINCBI36Build 36hg18NCBI36
Build 341134,029,751 - 34,076,481NCBI
Celera1134,220,789 - 34,271,699 (+)NCBICelera
Cytogenetic Map11p13NCBI
HuRef1133,769,782 - 33,820,808 (+)NCBIHuRef
CHM1_11134,072,620 - 34,123,525 (+)NCBICHM1_1
T2T-CHM13v2.01134,188,759 - 34,239,614 (+)NCBIT2T-CHM13v2.0
Caprin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392103,593,290 - 103,628,014 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2103,593,286 - 103,627,994 (-)EnsemblGRCm39 Ensembl
GRCm382103,762,945 - 103,797,669 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2103,762,941 - 103,797,649 (-)EnsemblGRCm38mm10GRCm38
MGSCv372103,603,102 - 103,637,797 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362103,565,858 - 103,598,436 (-)NCBIMGSCv36mm8
Celera2105,012,217 - 105,048,383 (-)NCBICelera
Cytogenetic Map2E2NCBI
Caprin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542212,126,893 - 12,170,877 (-)NCBIChiLan1.0ChiLan1.0
CAPRIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11133,903,543 - 33,957,294 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,902,072 - 33,957,134 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01134,023,981 - 34,079,335 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CAPRIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11833,695,371 - 33,733,688 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1833,695,371 - 33,733,688 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1833,301,246 - 33,339,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01834,306,683 - 34,344,820 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1834,306,683 - 34,344,820 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11833,865,625 - 33,903,949 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01833,458,234 - 33,496,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01834,093,795 - 34,132,098 (-)NCBIUU_Cfam_GSD_1.0
Caprin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494730,788,580 - 30,828,751 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365333,913,375 - 3,952,851 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365333,913,375 - 3,953,551 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPRIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl226,830,267 - 26,875,357 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1226,830,987 - 26,875,425 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2229,199,142 - 29,242,779 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPRIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1131,173,846 - 31,224,118 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl131,172,785 - 31,223,370 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038128,274,802 - 128,323,587 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caprin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476713,012,149 - 13,048,808 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476713,010,512 - 13,049,507 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Caprin1
440 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:176
Interacting mature miRNAs:202
Transcripts:ENSRNOT00000012428
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)35378111291609953Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat

Markers in Region
RH142945  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21144,276,968 - 44,277,203 (+)MAPPERmRatBN7.2
Rnor_6.01146,574,418 - 46,574,652NCBIRnor6.0
Rnor_5.01149,756,714 - 49,756,948UniSTSRnor5.0
RGSC_v3.41145,224,000 - 45,224,234UniSTSRGSC3.4
Celera1144,040,584 - 44,040,818UniSTS
RH 3.4 Map11331.2UniSTS
Cytogenetic Map11q12UniSTS
Cytogenetic Map3q32UniSTS
RH128979  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2390,153,870 - 90,154,082 (+)MAPPERmRatBN7.2
mRatBN7.21046,753,583 - 46,753,799 (+)MAPPERmRatBN7.2
Rnor_6.01048,364,124 - 48,364,339NCBIRnor6.0
Rnor_6.0393,702,094 - 93,702,305NCBIRnor6.0
Rnor_5.01048,155,005 - 48,155,220UniSTSRnor5.0
Rnor_5.03100,342,691 - 100,342,902UniSTSRnor5.0
RGSC_v3.41048,232,561 - 48,232,776UniSTSRGSC3.4
Celera1045,999,946 - 46,000,161UniSTS
Celera389,222,186 - 89,222,397UniSTS
RH 3.4 Map3721.8UniSTS
Cytogenetic Map3q32UniSTS
Cytogenetic Map10q23UniSTS
RH133345  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2390,155,792 - 90,156,011 (+)MAPPERmRatBN7.2
Rnor_6.0393,704,016 - 93,704,234NCBIRnor6.0
Rnor_5.03100,344,613 - 100,344,831UniSTSRnor5.0
Celera389,224,108 - 89,224,326UniSTS
RH 3.4 Map3719.32UniSTS
Cytogenetic Map3q32UniSTS
RH138024  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map3720.71UniSTS
Cytogenetic Map3q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000012428   ⟹   ENSRNOP00000012428
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl390,153,620 - 90,230,502 (-)Ensembl
Rnor_6.0 Ensembl393,702,487 - 93,734,282 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078616   ⟹   ENSRNOP00000074604
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl393,703,367 - 93,789,617 (-)Ensembl
RefSeq Acc Id: NM_001012185   ⟹   NP_001012185
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2390,154,264 - 90,186,067 (-)NCBI
Rnor_6.0393,702,487 - 93,734,282 (-)NCBI
Rnor_5.03100,342,429 - 100,430,355 (-)NCBI
RGSC_v3.4389,062,097 - 89,093,093 (-)RGD
Celera389,222,579 - 89,254,302 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234652   ⟹   XP_006234714
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2390,153,825 - 90,230,447 (-)NCBI
Rnor_6.0393,701,830 - 93,789,580 (-)NCBI
Rnor_5.03100,342,429 - 100,430,355 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105438   ⟹   XP_038961366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2390,152,305 - 90,226,324 (-)NCBI
RefSeq Acc Id: XM_039105440   ⟹   XP_038961368
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2390,153,825 - 90,185,504 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001012185   ⟸   NM_001012185
- UniProtKB: Q6YF16 (UniProtKB/Swiss-Prot),   Q5M9G3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006234714   ⟸   XM_006234652
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000012428   ⟸   ENSRNOT00000012428
RefSeq Acc Id: ENSRNOP00000074604   ⟸   ENSRNOT00000078616
RefSeq Acc Id: XP_038961366   ⟸   XM_039105438
- Peptide Label: isoform X1
- UniProtKB: Q6YF16 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038961368   ⟸   XM_039105440
- Peptide Label: isoform X3
Protein Domains
Caprin-1_C   Caprin-1_dimer

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5M9G3-F1-model_v2 AlphaFold Q5M9G3 1-707 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692255
Promoter ID:EPDNEW_R2780
Type:initiation region
Name:Caprin1_1
Description:cell cycle associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0393,734,336 - 93,734,396EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305707 AgrOrtholog
BioCyc Gene G2FUF-48567 BioCyc
Ensembl Genes ENSRNOG00000009152 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000012428 ENTREZGENE
  ENSRNOP00000012428.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012428 ENTREZGENE
  ENSRNOT00000012428.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108524 IMAGE-MGC_LOAD
InterPro Caprin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362173 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94820 IMAGE-MGC_LOAD
NCBI Gene 362173 ENTREZGENE
PANTHER PTHR22922 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Caprin-1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Caprin1 PhenoGen
UniProt A0A8L2Q6N7_RAT UniProtKB/TrEMBL
  CAPR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6YF16 ENTREZGENE
UniProt Secondary A9ZSZ9 UniProtKB/Swiss-Prot
  Q6YF16 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Caprin1  cell cycle associated protein 1  Gpiap1  GPI-anchored membrane protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Gpiap1  GPI-anchored membrane protein 1  Gpiap1_predicted  GPI-anchored membrane protein 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gpiap1_predicted  GPI-anchored membrane protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED