Arf6 (ADP-ribosylation factor 6) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Arf6 (ADP-ribosylation factor 6) Rattus norvegicus
Analyze
Symbol: Arf6
Name: ADP-ribosylation factor 6
RGD ID: 621279
Description: Predicted to have GTP binding activity; protein N-terminus binding activity; and thioesterase binding activity. Involved in several processes, including cellular response to nerve growth factor stimulus; maintenance of postsynaptic density structure; and regulation of dendrite development. Localizes to several cellular components, including endosome; glutamatergic synapse; and ruffle. Orthologous to human ARF6 (ADP ribosylation factor 6); PARTICIPATES IN E-cadherin signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; endocytosis pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: PROVISIONAL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2687,853,742 - 87,854,890 (+)NCBI
Rnor_6.0 Ensembl691,697,109 - 91,698,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0691,697,109 - 91,698,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06101,149,908 - 101,152,127 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,337,496 - 91,338,644 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1691,340,951 - 91,342,098 (+)NCBI
Celera686,351,473 - 86,352,621 (+)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:8947846   PMID:9312003   PMID:10022920   PMID:10036235   PMID:10913182   PMID:12477932   PMID:12584243   PMID:14684384   PMID:14978216   PMID:15509780   PMID:15980073   PMID:16100119  
PMID:16325184   PMID:16439353   PMID:16751103   PMID:16880525   PMID:17398095   PMID:17634366   PMID:17897316   PMID:18504258   PMID:19124467   PMID:19622751   PMID:19666113   PMID:19686593  
PMID:19845506   PMID:19946888   PMID:19948740   PMID:20080746   PMID:20458337   PMID:20682791   PMID:21276423   PMID:21423176   PMID:21499258   PMID:21825135   PMID:21951725   PMID:22344257  
PMID:22836268   PMID:23376485   PMID:23533145   PMID:23572513   PMID:23603394   PMID:24392021   PMID:24469796   PMID:24600047   PMID:24616519   PMID:25490267   PMID:25605715   PMID:26019348  
PMID:26824355   PMID:26884337   PMID:27044754   PMID:27330119   PMID:29420262   PMID:31206670   PMID:31907062  


Genomics

Comparative Map Data
Arf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2687,853,742 - 87,854,890 (+)NCBI
Rnor_6.0 Ensembl691,697,109 - 91,698,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0691,697,109 - 91,698,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06101,149,908 - 101,152,127 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,337,496 - 91,338,644 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1691,340,951 - 91,342,098 (+)NCBI
Celera686,351,473 - 86,352,621 (+)NCBICelera
Cytogenetic Map6q24NCBI
ARF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1449,893,082 - 49,897,054 (+)EnsemblGRCh38hg38GRCh38
GRCh381449,893,082 - 49,897,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371450,359,800 - 50,363,772 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371450,359,736 - 50,363,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,429,486 - 49,433,522 (+)NCBINCBI36hg18NCBI36
Build 341449,429,588 - 49,431,484NCBI
Celera1430,226,871 - 30,230,907 (+)NCBI
Cytogenetic Map14q21.3NCBI
HuRef1430,484,292 - 30,488,326 (+)NCBIHuRef
CHM1_11450,297,978 - 50,302,011 (+)NCBICHM1_1
Arf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,418,924 - 69,422,754 (+)NCBIGRCm39mm39
GRCm381269,372,150 - 69,375,980 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,372,150 - 69,373,783 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,473,137 - 70,476,967 (+)NCBIGRCm37mm9NCBIm37
MGSCv361270,290,793 - 70,292,388 (+)NCBImm8
Celera1270,470,421 - 70,474,282 (+)NCBICelera
Cytogenetic Map12C2NCBI
Arf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540912,817,496 - 12,818,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540912,814,814 - 12,818,142 (-)NCBIChiLan1.0ChiLan1.0
ARF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11448,788,586 - 48,792,641 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,789,329 - 48,789,856 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01430,482,191 - 30,486,741 (+)NCBIMhudiblu_PPA_v0panPan3
ARF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl826,445,647 - 26,525,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1826,445,407 - 26,449,430 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Arf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936583181,490 - 185,466 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,697,615 - 179,717,844 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,697,582 - 179,717,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,071,305 - 200,075,268 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARF6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,948,794 - 26,952,803 (+)NCBI
ChlSab1.1 Ensembl2426,949,388 - 26,950,074 (+)Ensembl
Arf6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473118,880,065 - 18,883,456 (-)NCBI

Position Markers
AW496366  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0691,697,836 - 91,697,948NCBIRnor6.0
Rnor_5.06101,151,155 - 101,151,267UniSTSRnor5.0
RGSC_v3.4691,338,223 - 91,338,335UniSTSRGSC3.4
Celera686,352,200 - 86,352,312UniSTS
Cytogenetic Map6q24UniSTS
ARF6_719  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0691,697,267 - 91,698,132NCBIRnor6.0
Rnor_5.06101,150,586 - 101,151,451UniSTSRnor5.0
RGSC_v3.4691,337,654 - 91,338,519UniSTSRGSC3.4
Celera686,351,631 - 86,352,496UniSTS
Cytogenetic Map6q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)62537030111715717Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)67009971115379601Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)648432758108268790Rat
4889848Pur25Proteinuria QTL 25140.003total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)65980306594001333Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)660606431108154445Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)660606431108154445Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)662263348107263348Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)666129520111129520Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)668781170147991367Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)671206251116206251Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)675449871120449871Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)675623277120276465Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)675623277120623277Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)675623277136143011Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)675623277136426962Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)675623393136142742Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)675623393136142742Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)676902247114203334Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)684763275108464097Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)684763275108464097Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)686422697115379601Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)687418448111129520Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)688507712133507712Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)688996335139410483Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)689631358134631358Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)689631358134631358Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:395
Count of miRNA genes:208
Interacting mature miRNAs:245
Transcripts:ENSRNOT00000006355
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000006355   ⟹   ENSRNOP00000006355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl691,697,109 - 91,698,255 (+)Ensembl
RefSeq Acc Id: NM_024152   ⟹   NP_077066
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2687,853,742 - 87,854,890 (+)NCBI
Rnor_6.0691,697,109 - 91,698,257 (+)NCBI
Rnor_5.06101,149,908 - 101,152,127 (+)NCBI
RGSC_v3.4691,337,496 - 91,338,644 (+)RGD
Celera686,351,473 - 86,352,621 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_077066 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA40690 (Get FASTA)   NCBI Sequence Viewer  
  AAH91146 (Get FASTA)   NCBI Sequence Viewer  
  EDM03520 (Get FASTA)   NCBI Sequence Viewer  
  P62332 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_077066   ⟸   NM_024152
- UniProtKB: P62332 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000006355   ⟸   ENSRNOT00000006355

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694637
Promoter ID:EPDNEW_R5160
Type:initiation region
Name:Arf6_1
Description:ADP-ribosylation factor 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0691,697,058 - 91,697,118EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 101150652 101150653 G T snv SBH/Ygl (MCW), ZF (KyushuU), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), MR/N (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), BBDP/WorN (KNAW), SBH/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), BUF/N (KNAW), FHL/EurMcwi (KNAW), GK/Ox (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), KFRS3B/Kyo (KyushuU), FHL/EurMcwi (MCW)
6 101150765 101150766 G T snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL), BUF/MNa (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU)
6 101150768 101150769 T A snv SDLEF7/Barth (UDEL), SBH/Ygl (MCW), FHL/EurMcwi (MCW), BUF/MNa (KyushuU), SR/JrHsd (MCW), KFRS3B/Kyo (KyushuU), SS/JrHsdMcwi (MCW), ZF (KyushuU)
6 101150817 101150818 G A snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL)
6 101150908 101150909 G T snv SBH/Ygl (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), BUF/N (KNAW), FHL/EurMcwi (KNAW), GK/Ox (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), MNS/Gib (KNAW), BBDP/WorN (KNAW), SS/JrHsdMcwi (KNAW), SS/Jr (KNAW), SR/JrHsd (KNAW), MR/N (KNAW), MHS/Gib (KNAW), LN/MavRrrc (KNAW), LL/MavRrrc (KNAW), LH/MavRrrc (KNAW), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), SHR/NCrlPrin (KNAW), ZF (KyushuU), KFRS3B/Kyo (KyushuU), BUF/MNa (KyushuU), SDLEF7/Barth (UDEL)
6 101150940 101150941 G C snv FHL/EurMcwi (MCW), ZF (KyushuU), KFRS3B/Kyo (KyushuU), BUF/MNa (KyushuU), SR/JrHsd (MCW), SBH/Ygl (MCW), SS/JrHsdMcwi (MCW), SDLEF7/Barth (UDEL)


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 91697333 91697334 G T snv LH/MavRrrc (RGD), SR/JrHsd (RGD), LEW/Crl (RGD), SR/JrHsd (MCW), LN/MavRrrc (RGD), SHRSP/Gcrc (RGD), MHS/Gib (RGD), WKY/N (MCW), WKY/NCrl (RGD), SS/JrHsdMcwi (MCW), SBH/Ygl (MCW), SHR/NHsd (RGD), WKY/Gcrc (RGD), SBH/Ygl (RGD), CDS, FHL/EurMcwi (MCW), Buf/N (MCW), MNS/Gib (RGD), MR/N (MCW), LEW/NCrlBR (RGD)
6 91697446 91697447 G T snv LEW/Crl (RGD), BBDP/Wor (RGD), MR/N (MCW), Buf/N (MCW), CDS, SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), WKY/NHsd (RGD), WKY/Gcrc (RGD), WKY/NCrl (RGD), SR/JrHsd (RGD), SHRSP/Gcrc (RGD), SHR/NHsd (RGD), SBH/Ygl (RGD), MNS/Gib (RGD), MHS/Gib (RGD), LL/MavRrrc (RGD), LN/MavRrrc (RGD), LH/MavRrrc (RGD)
6 91697449 91697450 T A snv SBH/Ygl (RGD), LH/MavRrrc (RGD), SBH/Ygl (MCW), WKY/NCrl (RGD), SS/JrHsdMcwi (MCW), SHR/NHsd (RGD), Buf/N (MCW), MNS/Gib (RGD), FHL/EurMcwi (MCW), WKY/Gcrc (RGD), MHS/Gib (RGD), BBDP/Wor (RGD), LL/MavRrrc (RGD), WKY/NHsd (RGD), LEW/Crl (RGD), LN/MavRrrc (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (MCW), CDS
6 91697498 91697499 G A snv SBH/Ygl (MCW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), CDS, Buf/N (MCW), MR/N (MCW), WKY/N (MCW), BBDP/Wor (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), MNS/Gib (RGD), SBH/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD)
6 91697589 91697590 G T snv SBH/Ygl (MCW), WKY/NHsd (RGD), LEW/NCrlBR (RGD), CDS, WKY/NCrl (RGD), SR/JrHsd (RGD), LEW/Crl (RGD), SS/JrHsdMcwi (MCW), SHRSP/Gcrc (RGD), BBDP/Wor (RGD), SHR/NHsd (RGD), FHL/EurMcwi (MCW), SBH/Ygl (RGD), WKY/N (MCW), MNS/Gib (RGD), MHS/Gib (RGD), SR/JrHsd (MCW), LL/MavRrrc (RGD), MR/N (MCW), LN/MavRrrc (RGD), Buf/N (MCW), LH/MavRrrc (RGD), WKY/Gcrc (RGD)
6 91697621 91697622 G C snv WKY/NHsd (RGD), WKY/Gcrc (RGD), WKY/NCrl (RGD), SR/JrHsd (RGD), SHRSP/Gcrc (RGD), SHR/NHsd (RGD), SBH/Ygl (RGD), MNS/Gib (RGD), MHS/Gib (RGD), LL/MavRrrc (RGD), LN/MavRrrc (RGD), LEW/NCrlBR (RGD), LEW/Crl (RGD), BBDP/Wor (RGD), WKY/N (MCW), MR/N (MCW), CDS, SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), LH/MavRrrc (RGD)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 91337720 91337721 G T snv SHR/OlaIpcv (ICL), LCR/2Mco (UMich), BUF/N (KNAW), MR/N (KNAW), WKY/N (KNAW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), FHL/EurMcwi (ICL), GK/Ox (ICL), LEW/Crl (ICL), LEW/NCrl (ICL), LH/MavRrrc (ICL), LL/MavRrrc (ICL), LN/MavRrrc (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), SR/JrHsd (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), WKY/NCrl (ICL), HCR/2Mco (UMich), SS/JrHsdMcwi (MDC)
6 91337833 91337834 G T snv SHR/OlaIpcv (ICL), SS/JrHsdMcwi (MDC), BUF/N (KNAW), MR/N (KNAW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/WorN (ICL), FHL/EurMcwi (ICL), GK/Ox (ICL), LEW/Crl (ICL), LEW/NCrl (ICL), LH/MavRrrc (ICL), LL/MavRrrc (ICL), LN/MavRrrc (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), SR/JrHsd (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), WKY/NCrl (ICL)
6 91337836 91337837 T A snv SHR/OlaIpcv (ICL), WKY/NCrl (ICL), WKY/NHsd (ICL), WKY/Gcrc (ICL), SS/JrHsdMcwi (ICL), SS/Jr (ICL), SR/JrHsd (ICL), SHRSP/Gcrc (ICL), SHR/NHsd (ICL), SHR/OlaIpcv (ICL), SBH/Ygl (ICL), MNS/Gib (ICL), MHS/Gib (ICL), LN/MavRrrc (ICL), LL/MavRrrc (ICL), LH/MavRrrc (ICL), LEW/NCrl (ICL), LEW/Crl (ICL), GK/Ox (ICL), FHL/EurMcwi (ICL), BBDP/WorN (ICL), SS/JrHsdMcwi (MCW), SR/JrHsd (MCW), FHL/EurMcwi (MCW), BUF/N (KNAW), SS/JrHsdMcwi (MDC)
6 91337885 91337886 G A snv LL/MavRrrc (ICL), SHR/OlaIpcv (ICL), WKY/Gcrc (ICL), LN/MavRrrc (ICL), SHRSP/Gcrc (ICL), LH/MavRrrc (ICL), LEW/NCrl (ICL), SS/JrHsdMcwi (ICL), LEW/Crl (ICL), SHR/NHsd (ICL), GK/Ox (ICL), WKY/NHsd (ICL), FHL/EurMcwi (ICL), SHR/OlaIpcv (ICL), SBH/Ygl (ICL), BBDP/WorN (ICL), SS/JrHsdMcwi (MCW), SS/Jr (ICL), SR/JrHsd (MCW), MNS/Gib (ICL), HCR/1Mco (UMich), FHL/EurMcwi (MCW), WKY/N (KNAW), MR/N (KNAW), BUF/N (KNAW), MHS/Gib (ICL), SS/JrHsdMcwi (MDC), SR/JrHsd (ICL), HCR/2Mco (UMich), WKY/NCrl (ICL)
6 91337976 91337977 G T snv SHR/OlaIpcv (ICL), HCR/2Mco (UMich), BUF/N (KNAW), MR/N (KNAW), WKY/N (KNAW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/WorN (ICL), FHL/EurMcwi (ICL), GK/Ox (ICL), LEW/Crl (ICL), LEW/NCrl (ICL), LH/MavRrrc (ICL), LL/MavRrrc (ICL), LN/MavRrrc (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), SR/JrHsd (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), WKY/NCrl (ICL), HCR/1Mco (UMich), SS/JrHsdMcwi (MDC)
6 91338008 91338009 G C snv SHR/OlaIpcv (ICL), HCR/2Mco (UMich), MR/N (KNAW), WKY/N (KNAW), FHL/EurMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), BBDP/WorN (ICL), FHL/EurMcwi (ICL), GK/Ox (ICL), LEW/Crl (ICL), LEW/NCrl (ICL), LH/MavRrrc (ICL), LL/MavRrrc (ICL), LN/MavRrrc (ICL), MHS/Gib (ICL), MNS/Gib (ICL), SBH/Ygl (ICL), SHR/OlaIpcv (ICL), SHR/NHsd (ICL), SHRSP/Gcrc (ICL), SR/JrHsd (ICL), SS/Jr (ICL), SS/JrHsdMcwi (ICL), WKY/Gcrc (ICL), WKY/NHsd (ICL), WKY/NCrl (ICL), SS/JrHsdMcwi (MDC)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621279 AgrOrtholog
Ensembl Genes ENSRNOG00000004791 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000006355 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006355 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7309902 IMAGE-MGC_LOAD
InterPro Arf6 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase_ARF/SAR UniProtKB/Swiss-Prot
KEGG Report rno:79121 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108680 IMAGE-MGC_LOAD
NCBI Gene 79121 ENTREZGENE
Pfam Arf UniProtKB/Swiss-Prot
PhenoGen Arf6 PhenoGen
PRINTS SAR1GTPBP UniProtKB/Swiss-Prot
PROSITE ARF UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
TIGRFAMs small_GTP UniProtKB/Swiss-Prot
UniProt ARF6_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary P26438 UniProtKB/Swiss-Prot
  Q5BKA5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Arf6  ADP-ribosylation factor 6      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Arf6  ADP-ribosylation factor 6      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization colocalized with phospholipase D1b to the plasma membrane, membrane ruffles, and intracellularly after antigen stimulation 727254
gene_expression expressed in both embryonic and adult hippocampus 625544
gene_process activates either Rac1 or phosphoinositide kinase pathway for regulation of dendritogenesis 625544
gene_process may be involved in regulating dendritic branching 625544
gene_product small GTPase family member 625544