ARF6 (ADP ribosylation factor 6) - Rat Genome Database

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Gene: ARF6 (ADP ribosylation factor 6) Pan paniscus
Analyze
Symbol: ARF6
Name: ADP ribosylation factor 6
RGD ID: 11875953
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); protein N-terminus binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); endocytic recycling (ortholog); PARTICIPATES IN E-cadherin signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Noonan syndrome 9 (ortholog); FOUND IN cell cortex (ortholog); cleavage furrow (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ADP-ribosylation factor 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11448,788,586 - 48,792,641 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,789,329 - 48,789,856 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01430,482,191 - 30,486,741 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
ARF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11448,788,586 - 48,792,641 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1448,789,329 - 48,789,856 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01430,482,191 - 30,486,741 (+)NCBIMhudiblu_PPA_v0panPan3
ARF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1449,893,082 - 49,897,054 (+)EnsemblGRCh38hg38GRCh38
GRCh381449,893,082 - 49,897,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371450,359,800 - 50,363,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361449,429,486 - 49,433,522 (+)NCBINCBI36hg18NCBI36
Build 341449,429,588 - 49,431,484NCBI
Celera1430,226,871 - 30,230,907 (+)NCBI
Cytogenetic Map14q21.3NCBI
HuRef1430,484,292 - 30,488,326 (+)NCBIHuRef
CHM1_11450,297,978 - 50,302,011 (+)NCBICHM1_1
Arf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391269,418,924 - 69,422,754 (+)NCBIGRCm39mm39
GRCm39 Ensembl1269,418,924 - 69,420,557 (+)Ensembl
GRCm381269,372,150 - 69,375,980 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1269,372,150 - 69,373,783 (+)EnsemblGRCm38mm10GRCm38
MGSCv371270,473,137 - 70,476,967 (+)NCBIGRCm37mm9NCBIm37
MGSCv361270,290,793 - 70,292,388 (+)NCBImm8
Celera1270,470,421 - 70,474,282 (+)NCBICelera
Cytogenetic Map12C2NCBI
Arf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2687,853,742 - 87,854,890 (+)NCBI
Rnor_6.0 Ensembl691,697,109 - 91,698,255 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0691,697,109 - 91,698,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06101,149,908 - 101,152,127 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4691,337,496 - 91,338,644 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1691,340,951 - 91,342,098 (+)NCBI
Celera686,351,473 - 86,352,621 (+)NCBICelera
Cytogenetic Map6q24NCBI
Arf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540912,817,496 - 12,818,023 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540912,814,814 - 12,818,142 (-)NCBIChiLan1.0ChiLan1.0
ARF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1826,445,407 - 26,449,430 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl826,445,647 - 26,525,530 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha826,199,039 - 26,203,086 (+)NCBI
ROS_Cfam_1.0826,622,998 - 26,627,047 (+)NCBI
UMICH_Zoey_3.1826,278,479 - 26,282,519 (+)NCBI
UNSW_CanFamBas_1.0826,351,547 - 26,355,590 (+)NCBI
UU_Cfam_GSD_1.0826,669,436 - 26,673,480 (+)NCBI
Arf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864058,503,422 - 58,507,422 (+)NCBI
SpeTri2.0NW_004936583181,490 - 185,466 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1179,697,615 - 179,717,844 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11179,697,582 - 179,717,299 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21200,071,305 - 200,075,268 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12426,948,794 - 26,952,803 (+)NCBI
ChlSab1.1 Ensembl2426,949,388 - 26,950,074 (+)Ensembl
Vero_WHO_p1.0NW_02366605315,277,536 - 15,281,551 (+)NCBI
Arf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473118,880,065 - 18,883,456 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003831738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000042923   ⟹   ENSPPAP00000020137
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1448,789,329 - 48,789,856 (+)Ensembl
RefSeq Acc Id: XM_003831738   ⟹   XP_003831786
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11448,788,586 - 48,792,641 (+)NCBI
Mhudiblu_PPA_v01430,482,191 - 30,486,741 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003831786 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003831786   ⟸   XM_003831738
- Sequence:
RefSeq Acc Id: ENSPPAP00000020137   ⟸   ENSPPAT00000042923


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000033272 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000020137 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000042923 UniProtKB/TrEMBL
InterPro Arf6 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase_ARF/SAR UniProtKB/TrEMBL
KEGG Report pps:100982400 UniProtKB/TrEMBL
NCBI Gene ARF6 ENTREZGENE
Pfam Arf UniProtKB/TrEMBL
PRINTS SAR1GTPBP UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A0A2R9AS00_PANPA UniProtKB/TrEMBL