Itpka (inositol-trisphosphate 3-kinase A) - Rat Genome Database

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Gene: Itpka (inositol-trisphosphate 3-kinase A) Rattus norvegicus
Analyze
Symbol: Itpka
Name: inositol-trisphosphate 3-kinase A
RGD ID: 619950
Description: Enables calcium/calmodulin-dependent protein kinase activity; inositol-1,4,5-trisphosphate 3-kinase activity; and small GTPase binding activity. Involved in modification of postsynaptic actin cytoskeleton. Acts upstream of or within actin cytoskeleton organization; dendritic spine maintenance; and positive regulation of dendritic spine morphogenesis. Located in dendritic spine. Is active in glutamatergic synapse and postsynaptic actin cytoskeleton. Orthologous to human ITPKA (inositol-trisphosphate 3-kinase A); PARTICIPATES IN inositol metabolic pathway; inositol phosphate metabolic pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH (+)-schisandrin B; 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: inositol 1,4,5-triphosphate 3-kinase; inositol 1,4,5-trisphosphate 3-kinase A; inositol 145-triphosphate 3-kinase; insP 3-kinase A; IP3 3-kinase A; IP3K A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,179,841 - 127,188,405 (+)NCBIGRCr8
mRatBN7.23106,726,036 - 106,734,601 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,726,036 - 106,734,600 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,401,341 - 110,409,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,996,888 - 119,005,445 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,657,281 - 116,665,838 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,545,007 - 111,553,605 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,545,007 - 111,553,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,093,293 - 118,102,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,257,482 - 106,266,160 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,153,909 - 106,162,588 (+)NCBI
Celera3105,636,919 - 105,645,481 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ItpkaRatBloom syndrome  ISORGD:7326038554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
ItpkaRatcolorectal cancer  ISORGD:7326038554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
ItpkaRatmosaic variegated aneuploidy syndrome 1  ISORGD:7326038554872ClinVar Annotator: match by term: Mosaic variegated aneuploidy syndrome 1ClinVarPMID:28492532

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Object Symbol
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Original Reference(s)
ItpkaRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of ITPKA mRNA]CTDPMID:31150632
ItpkaRat1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsISORGD:7326046480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
ItpkaRat1,2-dichloroethane decreases expressionISORGD:7326046480464ethylene dichloride results in decreased expression of ITPKA mRNACTDPMID:28960355
ItpkaRat1,2-dimethylhydrazine decreases expressionISORGD:73260464804641,2-Dimethylhydrazine results in decreased expression of ITPKA mRNACTDPMID:22206623
ItpkaRat1,3,5-trinitro-1,3,5-triazinane decreases expressionEXP 6480464cyclonite results in decreased expression of ITPKA mRNACTDPMID:25559034
ItpkaRat2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:7326046480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
ItpkaRat2,2',5,5'-tetrachlorobiphenyl multiple interactionsISORGD:7326046480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
ItpkaRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7326036480464Tetrachlorodibenzodioxin affects the expression of ITPKA mRNACTDPMID:22298810
ItpkaRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of ITPKA mRNACTDPMID:33387578
ItpkaRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:7326046480464Tetrachlorodibenzodioxin affects the expression of ITPKA mRNACTDPMID:26377647
ItpkaRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:7326036480464ITPKA mRNA affects the reaction [Tetrachlorodibenzodioxin results in increased activity of CYP1A1 protein]CTDPMID:21479225
ItpkaRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:7326036480464Tetrachlorodibenzodioxin results in decreased expression of ITPKA mRNACTDPMID:20106945|PMID:21632981
ItpkaRat2,4,4'-trichlorobiphenyl multiple interactionsISORGD:7326046480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
ItpkaRat2,4-dinitrotoluene affects expressionEXP 64804642,4-dinitrotoluene affects the expression of ITPKA mRNACTDPMID:21346803
ItpkaRat4,4'-diaminodiphenylmethane decreases expressionISORGD:73260464804644,4'-diaminodiphenylmethane results in decreased expression of ITPKA mRNACTDPMID:18648102
ItpkaRat4,4'-sulfonyldiphenol multiple interactionsISORGD:7326046480464[bisphenol S co-treated with Tretinoin] results in decreased expression of ITPKA mRNACTDPMID:30951980
ItpkaRat4,4'-sulfonyldiphenol affects methylationISORGD:7326046480464bisphenol S affects the methylation of ITPKA geneCTDPMID:31683443
ItpkaRat4-hydroxyphenyl retinamide increases expressionISORGD:7326046480464Fenretinide results in increased expression of ITPKA mRNACTDPMID:28973697
ItpkaRatall-trans-retinoic acid decreases expressionISORGD:7326046480464Tretinoin results in decreased expression of ITPKA mRNACTDPMID:16788091
ItpkaRatall-trans-retinoic acid multiple interactionsISORGD:7326046480464[bisphenol S co-treated with Tretinoin] results in decreased expression of ITPKA mRNACTDPMID:30951980

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Biological Process
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Original Reference(s)
ItpkaRatactin cytoskeleton organization acts_upstream_of_or_withinIMP 8553536PMID:19890013MGI 
ItpkaRatactin cytoskeleton organization acts_upstream_of_or_withinIGIUniProtKB:P630008553536PMID:19890013MGI 
ItpkaRatcellular response to calcium ion involved_inISSUniProtKB:P236771600115GO_REF:0000024UniProtGO_REF:0000024
ItpkaRatcellular response to calcium ion involved_inIEAUniProtKB:P23677|ensembl:ENSP000002603861600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatcellular response to calcium ion involved_inISORGD:7326031624291 PMID:12747803RGDPMID:12747803
ItpkaRatdendritic spine maintenance acts_upstream_of_or_withinIMP 8553536PMID:19890013MGI 
ItpkaRatinositol metabolic process acts_upstream_of_or_withinISORGD:7326041624291MGI:2152168 PMID:10454357RGDPMID:10454357
ItpkaRatinositol metabolic process acts_upstream_of_or_withinIEAUniProtKB:Q8R071|ensembl:ENSMUSP000000287581600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatinositol phosphate biosynthetic process involved_inIBACGD:CAL0000185409|FB:FBgn0031267|FB:FBgn0283680|MGI:1916968|MGI:1923750|PANTHER:PTN004357288|SGD:S000002424|SGD:S000002580|TAIR:locus:2159203|UniProtKB:Q96PC21600115GO_REF:0000033GO_CentralGO_REF:0000033
ItpkaRatinositol phosphate biosynthetic process involved_inIEAInterPro:IPR0055221600115GO_REF:0000002InterProGO_REF:0000002
ItpkaRatmodification of postsynaptic actin cytoskeleton involved_inIMP 8553536PMID:19890013SynGO 
ItpkaRatmodification of postsynaptic actin cytoskeleton involved_inIEP 8553536PMID:19890013SynGO 
ItpkaRatmodification of postsynaptic actin cytoskeleton involved_inIDA 8553536PMID:19890013SynGO 
ItpkaRatphosphatidylinositol phosphate biosynthetic process involved_inISSUniProtKB:P236771600115GO_REF:0000024UniProtGO_REF:0000024
ItpkaRatphosphatidylinositol phosphate biosynthetic process involved_inIEAUniProtKB:P23677|ensembl:ENSP000002603861600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatphosphatidylinositol phosphate biosynthetic process involved_inIBAPANTHER:PTN000274018|SGD:S000002580|UniProtKB:P23677|UniProtKB:P27987|UniProtKB:Q92551|UniProtKB:Q96DU7|UniProtKB:Q9UHH91600115GO_REF:0000033GO_CentralGO_REF:0000033
ItpkaRatphosphatidylinositol phosphate biosynthetic process involved_inISORGD:7326031624291 PMID:12747803, PMID:1847047RGDPMID:12747803|PMID:1847047
ItpkaRatpositive regulation of dendritic spine morphogenesis acts_upstream_of_or_withinIMP 8553536PMID:19890013MGI 
ItpkaRatregulation of synaptic plasticity acts_upstream_of_or_withinIEAUniProtKB:Q8R071|ensembl:ENSMUSP000000287581600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatregulation of synaptic plasticity acts_upstream_of_or_withinISORGD:7326041624291MGI:2152168 PMID:19890013RGDPMID:19890013
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Cellular Component
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Object Symbol
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Original Reference(s)
ItpkaRatcytoplasm is_active_inIBAFB:FBgn0032147|FB:FBgn0283680|MGI:109235|MGI:1351633|PANTHER:PTN000963625|UniProtKB:P27987|UniProtKB:Q92551|UniProtKB:Q96DU7|UniProtKB:Q96PC21600115GO_REF:0000033GO_CentralGO_REF:0000033
ItpkaRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatcytoskeleton located_inISORGD:7326031624291 PMID:1847047RGDPMID:1847047
ItpkaRatcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
ItpkaRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatcytoskeleton located_inIEAUniProtKB:P23677|ensembl:ENSP000002603861600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatcytoskeleton located_inISSUniProtKB:P236771600115GO_REF:0000024UniProtGO_REF:0000024
ItpkaRatdendritic spine located_inIDA 8553536PMID:19890013MGI 
ItpkaRatglutamatergic synapse is_active_inIMP 8553536PMID:19890013SynGO 
ItpkaRatglutamatergic synapse is_active_inIEP 8553536PMID:19890013SynGO 
ItpkaRatglutamatergic synapse is_active_inIDA 8553536PMID:19890013SynGO 
ItpkaRatnucleus is_active_inIBAFB:FBgn0031267|MGI:109235|MGI:1351633|MGI:1923750|MGI:3045325|PANTHER:PTN000963625|RGD:620954|SGD:S000002580|TAIR:locus:2159203|TAIR:locus:2183389|UniProtKB:Q8NFU5|UniProtKB:Q92551|UniProtKB:Q96DU7|UniProtKB:Q9UHH91600115GO_REF:0000033GO_CentralGO_REF:0000033
ItpkaRatpostsynaptic actin cytoskeleton is_active_inIMP 8553536PMID:19890013SynGO 
ItpkaRatpostsynaptic actin cytoskeleton is_active_inIDA 8553536PMID:19890013SynGO 
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Molecular Function
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Original Reference(s)
ItpkaRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatcalcium/calmodulin-dependent protein kinase activity  IDA 633124 RGD 
ItpkaRatcalmodulin binding enablesIEAUniProtKB-KW:KW-01121600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatinositol hexakisphosphate kinase activity enablesIBAMGI:1923750|PANTHER:PTN000274018|SGD:S000002424|UniProtKB:Q57X56|UniProtKB:Q92551|UniProtKB:Q96PC2|UniProtKB:Q9UHH9|dictyBase:DDB_G02787391600115GO_REF:0000033GO_CentralGO_REF:0000033
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity  IDA 633124 RGD 
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity enablesIEAEC:2.7.1.1271600115GO_REF:0000003UniProtGO_REF:0000003
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity enablesIEARHEA:110201600115GO_REF:0000116RHEAGO_REF:0000116
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity enablesIEAUniProtKB:P23677|ensembl:ENSP000002603861600115GO_REF:0000107EnsemblGO_REF:0000107
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity enablesISORGD:7326031624291 PMID:12747803, PMID:1847047RGDPMID:12747803|PMID:1847047
ItpkaRatinositol-1,4,5-trisphosphate 3-kinase activity  IMP 633124 RGD 
ItpkaRatkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatkinase activity enablesIEAInterPro:IPR0055221600115GO_REF:0000002InterProGO_REF:0000002
ItpkaRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
ItpkaRatsmall GTPase binding enablesIDA 8553536PMID:19890013MGI 
ItpkaRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
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Imported Annotations - SMPDB

Object Symbol
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Original Reference(s)
ItpkaRatinositol metabolic pathway  ISORGD:73260310402751 SMPDBSMP:00011
ItpkaRatinositol phosphate metabolic pathway  ISORGD:73260310402751 SMPDBSMP:00462

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
ItpkaRatcalcium/calcium-mediated signaling pathway   IEA 6907045 KEGGrno:04020
ItpkaRatinositol phosphate metabolic pathway  IEA 6907045 KEGGrno:00562
ItpkaRatphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070

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#
Reference Title
Reference Citation
1. Molecular cloning and expression of a complementary DNA for inositol 1,4,5-trisphosphate 3-kinase. Choi KY, etal., Science 1990 Apr 6;248(4951):64-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Inositol 1,4,5-trisphosphate 3-kinase a functions as a scaffold for synaptic Rac signaling. Kim IH, etal., J Neurosci. 2009 Nov 4;29(44):14039-49. doi: 10.1523/JNEUROSCI.2483-09.2009.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Cloning and expression in Escherichia coli of a rat brain cDNA encoding a Ca2+/calmodulin-sensitive inositol 1,4,5-trisphosphate 3-kinase. Takazawa K, etal., Biochem J 1990 Nov 15;272(1):107-12.
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PMID:7646431   PMID:8889548   PMID:10454357   PMID:12527368   PMID:15093681   PMID:15350215   PMID:15537642   PMID:19292454   PMID:19846664   PMID:20131911   PMID:22384237   PMID:22389500  
PMID:30053369  



Itpka
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,179,841 - 127,188,405 (+)NCBIGRCr8
mRatBN7.23106,726,036 - 106,734,601 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,726,036 - 106,734,600 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,401,341 - 110,409,898 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,996,888 - 119,005,445 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,657,281 - 116,665,838 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,545,007 - 111,553,605 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,545,007 - 111,553,604 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,093,293 - 118,102,060 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,257,482 - 106,266,160 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13106,153,909 - 106,162,588 (+)NCBI
Celera3105,636,919 - 105,645,481 (+)NCBICelera
Cytogenetic Map3q35NCBI
ITPKA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,493,874 - 41,503,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,493,393 - 41,503,551 (+)EnsemblGRCh38hg38GRCh38
GRCh371541,786,072 - 41,795,749 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,573,414 - 39,583,039 (+)NCBINCBI36Build 36hg18NCBI36
Build 341539,573,413 - 39,583,037NCBI
Celera1518,554,082 - 18,563,706 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,634,270 - 18,643,970 (+)NCBIHuRef
CHM1_11541,904,654 - 41,914,323 (+)NCBICHM1_1
T2T-CHM13v2.01539,300,037 - 39,309,713 (+)NCBIT2T-CHM13v2.0
Itpka
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,572,818 - 119,581,734 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,572,818 - 119,581,744 (+)EnsemblGRCm39 Ensembl
GRCm382119,742,337 - 119,751,253 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,742,337 - 119,751,263 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,568,073 - 119,576,989 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,433,778 - 119,442,694 (+)NCBIMGSCv36mm8
Celera2120,898,643 - 120,907,740 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Itpka
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,299,318 - 8,309,865 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,300,059 - 8,310,225 (+)NCBIChiLan1.0ChiLan1.0
ITPKA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,735,096 - 30,744,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,886,349 - 34,896,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,434,532 - 20,444,389 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,663,857 - 38,685,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,675,600 - 38,684,779 (+)Ensemblpanpan1.1panPan2
ITPKA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,532,191 - 8,541,273 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,532,284 - 8,541,285 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,591,175 - 8,600,076 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,666,590 - 8,675,492 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,666,590 - 8,675,501 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,587,903 - 8,596,796 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,695,316 - 8,704,204 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,827,050 - 8,835,956 (+)NCBIUU_Cfam_GSD_1.0
Itpka
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,992,042 - 87,000,822 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,840,152 - 4,848,881 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,840,113 - 4,848,881 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPKA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,867,642 - 129,875,639 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,867,261 - 129,877,762 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,939,082 - 144,947,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITPKA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,502,417 - 41,512,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604899,468,986 - 99,479,279 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itpka
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,655,777 - 8,664,600 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,655,762 - 8,664,599 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Itpka
12 total Variants

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:49
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000007247
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 40 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat

1 to 10 of 40 rows
RH130923  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,734,384 - 106,734,572 (+)MAPPERmRatBN7.2
Rnor_6.03111,553,389 - 111,553,576NCBIRnor6.0
Rnor_5.03118,101,844 - 118,102,031UniSTSRnor5.0
RGSC_v3.43106,265,955 - 106,266,142UniSTSRGSC3.4
Celera3105,645,265 - 105,645,452UniSTS
RH 3.4 Map3917.7UniSTS
Cytogenetic Map3q35UniSTS
BE106366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,734,718 - 106,734,882 (+)MAPPERmRatBN7.2
Rnor_6.03111,553,723 - 111,553,886NCBIRnor6.0
Rnor_5.03118,102,178 - 118,102,341UniSTSRnor5.0
RGSC_v3.43106,266,289 - 106,266,452UniSTSRGSC3.4
Celera3105,645,599 - 105,645,762UniSTS
RH 3.4 Map3921.1UniSTS
Cytogenetic Map3q35UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 7 49 111 91 90 59 25 59 6 213 94 91 45 60 31



Ensembl Acc Id: ENSRNOT00000007247   ⟹   ENSRNOP00000007247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3106,726,036 - 106,734,600 (+)Ensembl
Rnor_6.0 Ensembl3111,545,007 - 111,553,604 (+)Ensembl
RefSeq Acc Id: NM_031045   ⟹   NP_112307
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83127,179,841 - 127,188,405 (+)NCBI
mRatBN7.23106,726,036 - 106,734,601 (+)NCBI
Rnor_6.03111,545,007 - 111,553,605 (+)NCBI
Rnor_5.03118,093,293 - 118,102,060 (+)NCBI
RGSC_v3.43106,257,482 - 106,266,160 (+)RGD
Celera3105,636,919 - 105,645,481 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105917   ⟹   XP_038961845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83127,180,810 - 127,188,395 (+)NCBI
mRatBN7.23106,726,744 - 106,734,593 (+)NCBI
1 to 9 of 9 rows
Protein RefSeqs NP_112307 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961845 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41457 (Get FASTA)   NCBI Sequence Viewer  
  CAA40248 (Get FASTA)   NCBI Sequence Viewer  
  EDL79923 (Get FASTA)   NCBI Sequence Viewer  
  EDL79924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007247
  ENSRNOP00000007247.1
GenBank Protein P17105 (Get FASTA)   NCBI Sequence Viewer  
1 to 9 of 9 rows
RefSeq Acc Id: NP_112307   ⟸   NM_031045
- UniProtKB: P17105 (UniProtKB/Swiss-Prot),   A6HPH2 (UniProtKB/TrEMBL),   A6HPH3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007247   ⟸   ENSRNOT00000007247
RefSeq Acc Id: XP_038961845   ⟸   XM_039105917
- Peptide Label: isoform X1

Name Modeler Protein Id AA Range Protein Structure
AF-P17105-F1-model_v2 AlphaFold P17105 1-459 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692335
Promoter ID:EPDNEW_R2858
Type:initiation region
Name:Itpka_1
Description:inositol-trisphosphate 3-kinase A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03111,544,998 - 111,545,058EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-48192 BioCyc
BioCyc Pathway PWY-6361 [1D-myo-inositol hexakisphosphate biosynthesis I (from Ins(1,4,5)P3)] BioCyc
  PWY-6362 [1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)] BioCyc
  PWY-6364 [D-myo-inositol (1,3,4)-trisphosphate biosynthesis] BioCyc
BioCyc Pathway Image PWY-6361 BioCyc
  PWY-6362 BioCyc
  PWY-6364 BioCyc
Ensembl Genes ENSRNOG00000005284 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007247 ENTREZGENE
  ENSRNOT00000007247.4 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.470.160 UniProtKB/Swiss-Prot
InterPro IPK UniProtKB/Swiss-Prot
  IPK_sf UniProtKB/Swiss-Prot
KEGG Report rno:81677 UniProtKB/Swiss-Prot
NCBI Gene 81677 ENTREZGENE
PANTHER INOSITOL-TRISPHOSPHATE 3-KINASE A UniProtKB/Swiss-Prot
  PTHR12400 UniProtKB/Swiss-Prot
Pfam IPK UniProtKB/Swiss-Prot
PhenoGen Itpka PhenoGen
RatGTEx ENSRNOG00000005284 RatGTEx
Superfamily-SCOP SAICAR synthase-like UniProtKB/Swiss-Prot
UniProt A6HPH2 ENTREZGENE, UniProtKB/TrEMBL
  A6HPH3 ENTREZGENE, UniProtKB/TrEMBL
  IP3KA_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Itpka  inositol-trisphosphate 3-kinase A  Itpka  inositol 1,4,5-trisphosphate 3-kinase A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Itpka  inositol 1,4,5-trisphosphate 3-kinase A    inositol 1,4,5-triphosphate 3-kinase  Name updated 1299863 APPROVED
2002-08-07 Itpka  inositol 1,4,5-triphosphate 3-kinase      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_domains contains calmodulin-binding site and six regions with amino acid compositions (PEST regions) common to proteins that are susceptible to calpain 633125
gene_regulation activity stimulated by Ca2+ in the presence of calmodulin 633124