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ONTOLOGY REPORT - ANNOTATIONS


Term:dendritic spine development
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Accession:GO:0060996 term browser browse the term
Definition:The process whose specific outcome is the progression of the dendritic spine over time, from its formation to the mature structure. A dendritic spine is a protrusion from a dendrite and a specialized subcellular compartment involved in synaptic transmission.


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dendritic spine development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl4 acyl-CoA synthetase long-chain family member 4 IMP RGD PMID:19166906 RGD:2312805 NCBI chr  X:113,596,247...113,660,024
Ensembl chr  X:113,596,239...113,659,944
JBrowse link
G Arf4 ADP-ribosylation factor 4 acts_upstream_of_or_within ISO MGI:3879059 (MGI:5464048|PMID:23050017)
(PMID:23050017)
RGD PMID:23050017 MGI:5464048 NCBI chr16:2,338,333...2,354,909
Ensembl chr16:2,338,333...2,354,909
JBrowse link
G Arid1b AT-rich interaction domain 1B acts_upstream_of_or_within ISO (MGI:5771923|PMID:26937011) RGD PMID:26937011 MGI:5771923 NCBI chr 1:45,923,119...46,232,301
Ensembl chr 1:45,923,222...46,234,874
JBrowse link
G Camk2a calcium/calmodulin-dependent protein kinase II alpha involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:28130356)
UniProt
Ensembl
RGD
PMID:28130356 GO_REF:0000024 GO_REF:0000107 NCBI chr18:56,193,978...56,295,869
Ensembl chr18:56,193,978...56,295,869
JBrowse link
G Ephb1 Eph receptor B1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2683349|PMID:14691139)
UniProt
RGD
PMID:14691139 GO_REF:0000024 MGI:2683349 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:2683349|PMID:14691139) RGD PMID:14691139 MGI:2683349 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO (MGI:2683349|PMID:14691139) RGD PMID:14691139 MGI:2683349 NCBI chr11:83,527,960...83,546,742
Ensembl chr11:83,527,962...83,546,674
JBrowse link
G Fmr1 FMRP translational regulator 1 acts_upstream_of_or_within ISO MGI:1339656|MGI:1339975|MGI:1339984|MGI:1917834 (MGI:5471853|PMID:23509247) RGD PMID:23509247 MGI:5471853 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Iqsec1 IQ motif and Sec7 domain ArfGEF 1 involved_in ISO (MGI:6414710|PMID:31607425) RGD PMID:31607425 MGI:6414710 NCBI chr 4:123,400,717...123,454,656
Ensembl chr 4:123,307,624...123,453,478
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 acts_upstream_of_or_within ISO MGI:95564 (MGI:5471853|PMID:23509247) RGD PMID:23509247 MGI:5471853 NCBI chr 1:162,768,156...162,883,356
Ensembl chr 1:162,768,156...162,883,355
JBrowse link
G Pak2 p21 (RAC1) activated kinase 2 acts_upstream_of_or_within ISO MGI:95564 (MGI:5471853|PMID:23509247) RGD PMID:23509247 MGI:5471853 NCBI chr11:72,829,407...72,865,815
Ensembl chr11:72,829,238...72,865,902
Ensembl chr11:72,829,238...72,865,902
JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 acts_upstream_of_or_within ISO MGI:95564 (MGI:5471853|PMID:23509247) RGD PMID:23509247 MGI:5471853 NCBI chr  X:114,784,452...115,042,683
Ensembl chr  X:114,929,029...115,036,669
JBrowse link
G Pak4 p21 (RAC1) activated kinase 4 acts_upstream_of_or_within ISO MGI:95564 (MGI:5471853|PMID:23509247) RGD PMID:23509247 MGI:5471853 NCBI chr 1:85,162,462...85,201,746
Ensembl chr 1:85,162,452...85,201,757
JBrowse link
G Slc12a5 solute carrier family 12 member 5 involved_in IDA
IEA
ISO
PMID:22345354
GO_REF:0000107
(PMID:24668262)
Ensembl
RGD
PMID:24668262, PMID:22345354 GO_REF:0000107, RGD:10449516 NCBI chr 3:161,433,303...161,465,078
Ensembl chr 3:161,425,988...161,462,879
JBrowse link
G Slc9a6 solute carrier family 9 member A6 acts_upstream_of_or_within ISO MGI:3604561 (MGI:5515840|PMID:24035762) RGD PMID:24035762 MGI:5515840 NCBI chr  X:158,979,081...159,045,019
Ensembl chr  X:158,978,755...159,045,044
JBrowse link
G Spire1 spire-type actin nucleation factor 1 acts_upstream_of_or_within ISO MGI:4310183 (MGI:5698045|PMID:24345451) RGD PMID:24345451 MGI:5698045 NCBI chr18:63,226,557...63,357,420
Ensembl chr18:63,226,557...63,357,298
JBrowse link
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5427519|PMID:22559944)
(PMID:22559944)
UniProt
RGD
PMID:22559944 GO_REF:0000024 MGI:5427519 NCBI chr13:48,065,280...48,286,888
Ensembl chr13:48,068,158...48,286,720
JBrowse link
G Uba6 ubiquitin-like modifier activating enzyme 6 acts_upstream_of_or_within ISO MGI:2176173|MGI:5509054 (MGI:5495570|PMID:23499007) RGD PMID:23499007 MGI:5495570 NCBI chr14:23,507,628...23,571,446
Ensembl chr14:23,507,628...23,571,446
JBrowse link
dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in ISS
ISO
GO_REF:0000024
(MGI:5825418|PMID:25851601)
UniProt
RGD
PMID:25851601 GO_REF:0000024 MGI:5825418 NCBI chr 5:155,690,267...155,728,385
Ensembl chr 5:155,691,390...155,728,300
JBrowse link
G Ctnnd2 catenin delta 2 involved_in ISO
IEA
IBA
(PMID:25807484)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:25807484, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:83,227,247...84,094,315
Ensembl chr 2:83,393,282...84,094,315
JBrowse link
G Dip2a disco-interacting protein 2 homolog A involved_in ISO (MGI:6364690|PMID:31600191) RGD PMID:31600191 MGI:6364690 NCBI chr20:13,044,056...13,127,971
Ensembl chr20:13,044,104...13,127,487
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IEA
ISO
IMP
GO_REF:0000107
(MGI:5285520|PMID:20952458)
PMID:21525273
Ensembl
RGD
PMID:20952458, PMID:21525273 GO_REF:0000107 MGI:5285520, RGD:8554095 NCBI chr10:56,625,845...56,655,543
Ensembl chr10:56,627,411...56,653,599
JBrowse link
G Dock10 dedicator of cytokinesis 10 involved_in ISO (MGI:5825418|PMID:25851601) RGD PMID:25851601 MGI:5825418 NCBI chr 9:86,424,638...86,571,854
NCBI chr 9:86,312,470...86,423,054
Ensembl chr 9:86,312,501...86,571,870
JBrowse link
G Dvl1 dishevelled segment polarity protein 1 involved_in IGI PMID:21670302 ParkinsonsUK-UCL PMID:21670302 RGD:10449514 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Epha5 EPH receptor A5 involved_in IDA PMID:20824214 UniProt PMID:20824214 RGD:8554330 NCBI chr14:25,589,312...25,958,258
Ensembl chr14:25,589,762...25,958,227
JBrowse link
G Ephb1 Eph receptor B1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:2683349|PMID:14691139)
(MGI:3707923|PMID:17310244)
UniProt
RGD
PMID:14691139 PMID:17310244 GO_REF:0000024 MGI:2683349 MGI:3707923 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within
involved_in
ISO (MGI:3707923|PMID:17310244)
(MGI:2683349|PMID:14691139)
RGD PMID:14691139 PMID:17310244 MGI:2683349 MGI:3707923 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO (MGI:2683349|PMID:14691139) RGD PMID:14691139 MGI:2683349 NCBI chr11:83,527,960...83,546,742
Ensembl chr11:83,527,962...83,546,674
JBrowse link
G Hdac6 histone deacetylase 6 acts_upstream_of_or_within ISO (MGI:5547631|PMID:24113571) RGD PMID:24113571 MGI:5547631 NCBI chr  X:15,396,185...15,417,486
Ensembl chr  X:15,295,473...15,316,671
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
G Myo5b myosin Vb IMP RGD PMID:18984164 RGD:11533643 NCBI chr18:70,426,865...70,729,985
Ensembl chr18:70,427,007...70,729,030
JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5825418|PMID:25851601)
UniProt
RGD
PMID:25851601 GO_REF:0000024 MGI:5825418 NCBI chr  X:114,784,452...115,042,683
Ensembl chr  X:114,929,029...115,036,669
JBrowse link
G Prmt3 protein arginine methyltransferase 3 IMP RGD PMID:20647003 RGD:9491824 NCBI chr 1:105,113,595...105,200,253
Ensembl chr 1:105,113,595...105,200,470
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964), (MGI:5320272|PMID:21411674) RGD PMID:18082964 PMID:21411674 MGI:3772418 MGI:5320272 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Septin7 septin 7 acts_upstream_of_or_within ISO (MGI:5547631|PMID:24113571) RGD PMID:24113571 MGI:5547631 NCBI chr 8:26,412,910...26,476,615
Ensembl chr 8:26,413,233...26,476,611
JBrowse link
G Shank1 SH3 and multiple ankyrin repeat domains 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3775591|PMID:18272690)
BHF-UCL
RGD
PMID:18272690 GO_REF:0000024 MGI:3775591 NCBI chr 1:100,297,137...100,344,377
Ensembl chr 1:100,297,152...100,344,377
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:5056336 (MGI:5013997|PMID:21558424)
(MGI:4948759|PMID:21423165), (MGI:5285139|PMID:21167025)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21167025 PMID:21423165 PMID:21558424 GO_REF:0000024 GO_REF:0000107 MGI:4948759 MGI:5013997 MGI:5285139 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5825418|PMID:25851601)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25851601 GO_REF:0000024 GO_REF:0000107 MGI:5825418 NCBI chr 4:51,677,722...51,726,212
Ensembl chr 4:51,677,722...51,726,212
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:21670302)
UniProtKB:Q9WVB9 (MGI:5014434|PMID:21670302)
RGD PMID:21670302 MGI:5014434 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
G Zfp365 zinc finger protein 365 involved_in ISS
ISO
GO_REF:0000024
(MGI:5908530|PMID:25983680)
UniProt
RGD
PMID:25983680 GO_REF:0000024 MGI:5908530 NCBI chr20:22,060,160...22,083,766
Ensembl chr20:22,060,224...22,086,108
JBrowse link
negative regulation of dendritic spine development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within ISO (PMID:24328732) RGD PMID:24328732 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5464048|PMID:23050017)
Ensembl
RGD
PMID:23050017 GO_REF:0000107 MGI:5464048 NCBI chr 7:104,670,076...104,951,090
Ensembl chr 7:104,669,672...104,801,045
JBrowse link
G Fstl4 follistatin-like 4 acts_upstream_of_or_within ISO (MGI:5566541|PMID:24573299) RGD PMID:24573299 MGI:5566541 NCBI chr10:38,104,344...38,532,216
Ensembl chr10:38,104,558...38,532,196
JBrowse link
G Grin3a glutamate ionotropic receptor NMDA type subunit 3A involved_in IDA PMID:24297929 UniProt PMID:24297929 RGD:42721994 NCBI chr 5:64,928,620...65,073,012
Ensembl chr 5:64,928,620...65,073,012
JBrowse link
G Hdac2 histone deacetylase 2 IMP RGD PMID:23485013 RGD:9590265 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Ngfr nerve growth factor receptor IMP RGD PMID:22548193 RGD:10413901 NCBI chr10:83,389,828...83,408,061
Ensembl chr10:83,389,847...83,408,061
JBrowse link
G Plk2 polo-like kinase 2 IMP RGD PMID:18723513 RGD:7241135 NCBI chr 2:41,911,143...41,916,901
Ensembl chr 2:41,911,131...41,916,901
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5431284|PMID:22519304)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22519304 GO_REF:0000024 GO_REF:0000107 MGI:5431284 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
negative regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnm3 dynamin 3 IDA RGD PMID:17880892 RGD:8553820 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IMP
IDA
RGD PMID:20531346, PMID:20531346 RGD:11251757, RGD:11251757 NCBI chr17:20,090,136...20,182,332
Ensembl chr17:20,090,246...20,182,206
JBrowse link
G Efna1 ephrin A1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3696283|PMID:17143272)
UniProt
RGD
PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222
JBrowse link
G Ngef neuronal guanine nucleotide exchange factor involved_in ISS
ISO
GO_REF:0000024
(MGI:3696283|PMID:17143272)
UniProt
RGD
PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 9:94,569,286...94,601,852
Ensembl chr 9:94,569,286...94,601,852
JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO
ISS
UniProtKB:Q99K10 (PMID:23143522)
(MGI:5493186|PMID:23143522)
GO_REF:0000024
RGD
BHF-UCL
PMID:23143522 GO_REF:0000024 MGI:5493186 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO (MGI:5286761|PMID:21808020) RGD PMID:21808020 MGI:5286761 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3629385|PMID:16675393) RGD PMID:16675393 MGI:3629385 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Ube3a ubiquitin protein ligase E3A IMP RGD PMID:25867122 RGD:11079590 NCBI chr 1:116,586,901...116,678,161
Ensembl chr 1:116,587,815...116,679,973
JBrowse link
positive regulation of dendritic spine development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:24328732)
GO_REF:0000107
RGD
Ensembl
PMID:24328732 GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:23889934 RGD:8553918 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
G Camk1 calcium/calmodulin-dependent protein kinase I involved_in ISO
ISS
(PMID:18184567)
GO_REF:0000024
RGD
UniProt
PMID:18184567 GO_REF:0000024 NCBI chr 4:145,289,300...145,300,146
Ensembl chr 4:145,288,996...145,300,177
JBrowse link
G Cdkl5 cyclin-dependent kinase-like 5 IMP RGD PMID:23671101 RGD:12791021 NCBI chr  X:35,536,396...35,773,204
Ensembl chr  X:35,599,258...35,771,711
JBrowse link
G Cfl1 cofilin 1 IMP RGD PMID:25723479 RGD:11570400 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5300629|PMID:22153079) RGD PMID:22153079 MGI:5300629 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Crebbp CREB binding protein IMP RGD PMID:32206715 RGD:126848802 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Dlg5 discs large MAGUK scaffold protein 5 involved_in ISO (MGI:5608921|PMID:25232112) RGD PMID:25232112 MGI:5608921 NCBI chr15:120,213...230,312
Ensembl chr15:120,372...228,977
JBrowse link
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 IMP RGD PMID:22514323 RGD:10755512 NCBI chr 1:175,883,362...175,895,510
Ensembl chr 1:175,883,363...175,895,510
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3798322|PMID:18539120)
UniProt
RGD
PMID:18539120 GO_REF:0000024 MGI:3798322 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Foxo6 forkhead box O6 involved_in ISO (MGI:5461238|PMID:23222102) RGD PMID:23222102 MGI:5461238 NCBI chr 5:139,208,153...139,227,288
Ensembl chr 5:139,208,046...139,227,196
JBrowse link
G Grn granulin precursor IMP RGD PMID:21813674 RGD:5509044 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IMP RGD PMID:24990929 RGD:10002784 NCBI chr17:6,664,730...6,676,753
Ensembl chr17:6,665,659...6,676,654
JBrowse link
G Il2 interleukin 2 IDA RGD PMID:20225203 RGD:5147914 NCBI chr 2:123,847,150...123,851,854
Ensembl chr 2:123,847,150...123,851,854
JBrowse link
G Itsn1 intersectin 1 IMP RGD PMID:19258322 RGD:13461864 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G Kalrn kalirin, RhoGEF kinase acts_upstream_of_or_within ISO MGI:3831288|MGI:3831292|MGI:97845 (MGI:3821420|PMID:19020030), (MGI:5645427|PMID:25865668) RGD PMID:19020030 PMID:25865668 MGI:3821420 MGI:5645427 NCBI chr11:69,484,293...70,025,682
Ensembl chr11:69,484,293...70,025,633
JBrowse link
G Llph LLP homolog, long-term synaptic facilitation factor involved_in ISO (MGI:5796065|PMID:26961175) RGD PMID:26961175 MGI:5796065 NCBI chr 7:65,004,544...65,009,509
Ensembl chr 7:65,005,791...65,008,823
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IDA RGD PMID:16638019 RGD:2317707 NCBI chr 5:75,557,038...75,678,067
Ensembl chr 5:75,557,042...75,676,584
JBrowse link
G Mapk6 mitogen-activated protein kinase 6 acts_upstream_of_or_within ISO MGI:1333110 (MGI:5430253|PMID:22508986) RGD PMID:22508986 MGI:5430253 NCBI chr 8:82,328,013...82,351,108
Ensembl chr 8:82,328,020...82,351,108
JBrowse link
G Mapkapk5 MAPK activated protein kinase 5 acts_upstream_of_or_within ISO MGI:1354946|MGI:2680287 (MGI:5430253|PMID:22508986) RGD PMID:22508986 MGI:5430253 NCBI chr12:40,510,378...40,529,332
Ensembl chr12:40,510,378...40,529,338
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24188180 RGD:12789443 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:21683721 RGD:10040994 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 involved_in ISO (MGI:5300629|PMID:22153079) RGD PMID:22153079 MGI:5300629 NCBI chr 1:266,953,006...267,038,879
Ensembl chr 1:266,952,561...267,038,883
JBrowse link
G Nlgn1 neuroligin 1 involved_in IMP
ISO
IDA
(MGI:5493186|PMID:23143522)
PMID:17582332
UniProtKB:Q99K10 (PMID:23143522)
RGD PMID:23143522, PMID:15681343, PMID:17582332 MGI:5493186, RGD:8553420, RGD:8553502 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 IMP RGD PMID:15681343 RGD:8553420 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 IMP RGD PMID:15681343 RGD:8553420 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 IMP RGD PMID:22509272 RGD:7174739 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO MGI:1928831 (MGI:3803029|PMID:18596162), (MGI:4461331|PMID:20610754) RGD PMID:18596162 PMID:20610754 MGI:3803029 MGI:4461331 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Palm paralemmin involved_in ISO (MGI:5009384|PMID:18287537) RGD PMID:18287537 MGI:5009384 NCBI chr 7:12,708,024...12,721,055
Ensembl chr 7:12,708,015...12,793,711
JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A IMP RGD PMID:12052877 RGD:1299363 NCBI chr 4:29,976,485...30,247,371
Ensembl chr 4:29,978,739...30,241,911
JBrowse link
G Psen1 presenilin 1 involved_in ISO (PMID:21951279) RGD PMID:21951279 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798
JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2685385 (MGI:5645427|PMID:25865668) RGD PMID:25865668 MGI:5645427 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G RGD1563888 similar to DNA segment, Chr 16, ERATO Doi 472, expressed involved_in ISO (MGI:5908509|PMID:27404227) RGD PMID:27404227 MGI:5908509 NCBI chr11:17,073,296...17,120,235
Ensembl chr11:17,076,980...17,130,120
JBrowse link
G Shank1 SH3 and multiple ankyrin repeat domains 1 involved_in IDA PMID:18287537 UniProt PMID:18287537 RGD:8553517 NCBI chr 1:100,297,137...100,344,377
Ensembl chr 1:100,297,152...100,344,377
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISS
ISO
IEA
PMID:21795692
(MGI:5320264|PMID:21795692)
GO_REF:0000107
RGD
Ensembl
PMID:21795692, PMID:21795692 GO_REF:0000107 MGI:5320264, RGD:7349315 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Tsc2 TSC complex subunit 2 IMP RGD PMID:16595860 RGD:11568665 NCBI chr10:13,962,006...13,996,684
Ensembl chr10:13,961,947...13,996,584
JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IMP RGD PMID:24117785 RGD:8554267 NCBI chr 3:162,480,766...162,594,145
Ensembl chr 3:162,480,804...162,581,610
JBrowse link
positive regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 IMP RGD PMID:23441206 RGD:11530033 NCBI chr14:104,338,486...104,375,840
Ensembl chr14:104,340,434...104,375,649
JBrowse link
G Actr3 actin related protein 3 IMP RGD PMID:23441206 RGD:11530033 NCBI chr13:41,695,520...41,738,622
Ensembl chr13:41,695,183...41,738,658
JBrowse link
G Afdn afadin, adherens junction formation factor IMP RGD PMID:22948147 RGD:13838731 NCBI chr 1:53,713,873...53,861,918
Ensembl chr 1:53,715,693...53,802,658
JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 IMP RGD PMID:15673667 RGD:9684988 NCBI chr10:109,107,326...109,187,458
Ensembl chr10:109,107,389...109,187,115
JBrowse link
G Bhlhb9 basic helix-loop-helix family member B9 involved_in ISO (MGI:5545985|PMID:21199326) RGD PMID:21199326 MGI:5545985 NCBI chr  X:106,359,981...106,393,457
Ensembl chr  X:106,390,759...106,393,459
JBrowse link
G Camk2b calcium/calmodulin-dependent protein kinase II beta involved_in IMP PMID:12873385 UniProt PMID:12873385 RGD:8553829 NCBI chr14:86,208,876...86,297,727
Ensembl chr14:86,208,901...86,297,652
JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:4888105|PMID:20516077)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20516077 GO_REF:0000024 GO_REF:0000107 MGI:4888105 NCBI chr 3:93,701,830...93,789,580
Ensembl chr 3:93,702,487...93,789,617
JBrowse link
G Caprin2 caprin family member 2 involved_in ISO (MGI:4888105|PMID:20516077) RGD PMID:20516077 MGI:4888105 NCBI chr 4:183,304,993...183,374,195
Ensembl chr 4:183,305,813...183,374,195
JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase IMP RGD PMID:18606847 RGD:11576294 NCBI chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
Ensembl chr  X:9,815,652...10,156,155
JBrowse link
G Cux2 cut-like homeobox 2 involved_in ISO (MGI:4836115|PMID:20510857) RGD PMID:20510857 MGI:4836115 NCBI chr12:40,016,774...40,221,067
Ensembl chr12:40,018,937...40,219,291
JBrowse link
G Dbn1 drebrin 1 involved_in IMP
ISO
ISS
IBA
IEA
(MGI:5688247|PMID:25865831)
GO_REF:0000024
PMID:21873635
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:25865831, PMID:19174472, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:5688247, RGD:10398809, RGD:13792537 NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
JBrowse link
G Dbnl drebrin-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:86,029,335...86,044,364
Ensembl chr14:86,029,335...86,044,364
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in IMP PMID:23651854 UniProt PMID:23651854 RGD:13792545 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dnm1l dynamin 1-like IMP RGD PMID:19605646 RGD:7800727 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
G Eef2k eukaryotic elongation factor-2 kinase IMP RGD PMID:20427644 RGD:10401235 NCBI chr 1:190,780,211...190,839,926
Ensembl chr 1:190,780,236...190,842,324
JBrowse link
G Kalrn kalirin, RhoGEF kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4358076 (MGI:4355773|PMID:19625617)
Ensembl
RGD
PMID:19625617 GO_REF:0000107 MGI:4355773 NCBI chr11:69,484,293...70,025,682
Ensembl chr11:69,484,293...70,025,633
JBrowse link
G Lrp8 LDL receptor related protein 8 involved_in ISO (MGI:5426130|PMID:21852430) RGD PMID:21852430 MGI:5426130 NCBI chr 5:127,404,348...127,476,636
Ensembl chr 5:127,404,450...127,476,641
JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate IMP RGD PMID:16202710 RGD:9685333 NCBI chr20:42,966,140...42,971,838
Ensembl chr20:42,966,140...42,971,838
JBrowse link
G Mfn1 mitofusin 1 IMP RGD PMID:19605646 RGD:7800727 NCBI chr 2:118,929,738...118,971,689
Ensembl chr 2:118,929,738...118,973,698
JBrowse link
G Mfn2 mitofusin 2 IMP RGD PMID:19605646 RGD:7800727 NCBI chr 5:164,684,244...164,715,414
Ensembl chr 5:164,684,509...164,714,145
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IMP RGD PMID:19605646 RGD:7800727 NCBI chr11:74,717,600...74,793,902
Ensembl chr11:74,720,254...74,793,803
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 involved_in ISO (MGI:5619436|PMID:23483716) RGD PMID:23483716 MGI:5619436 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Pak3 p21 (RAC1) activated kinase 3 IMP RGD PMID:18481281 RGD:7775053 NCBI chr  X:114,784,452...115,042,683
Ensembl chr  X:114,929,029...115,036,669
JBrowse link
G Reln reelin involved_in IEA
ISO
GO_REF:0000107
(MGI:5286805|PMID:21664258), (MGI:5426130|PMID:21852430)
Ensembl
RGD
PMID:21664258 PMID:21852430 GO_REF:0000107 MGI:5286805 MGI:5426130 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:16418534 RGD:10043163 NCBI chr 5:2,257,910...2,497,429 JBrowse link
G Tiam1 TIAM Rac1 associated GEF 1 IMP RGD PMID:16474385 RGD:10043325 NCBI chr11:29,931,083...30,061,173
Ensembl chr11:29,933,163...30,051,103
JBrowse link
regulation of dendritic spine development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf6 ADP-ribosylation factor 6 involved_in IBA
ISO
IMP
PMID:21873635
(MGI:4887338|PMID:16325184)
PMID:16672654
RGD PMID:16325184, PMID:21873635, PMID:16672654 MGI:4887338, RGD:13792537, RGD:8554141 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (MGI:5521401|PMID:24155305) RGD PMID:24155305 MGI:5521401 NCBI chr 1:255,660,165...255,842,671
Ensembl chr 1:255,665,238...255,815,733
JBrowse link
G Disc1 DISC1 scaffold protein IMP RGD PMID:20139976 RGD:5509795 NCBI chr19:57,818,838...58,069,992
Ensembl chr19:57,820,260...58,066,152
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO
ISS
IEA
(PMID:16631377)
(MGI:3655188|PMID:16631377)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:16631377 GO_REF:0000024 GO_REF:0000107 MGI:3655188 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Kif1a kinesin family member 1A involved_in IMP PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr 9:100,171,851...100,253,626
Ensembl chr 9:100,171,772...100,253,609
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(MGI:3804504|PMID:18599438)
UniProt
RGD
PMID:18599438 GO_REF:0000024 MGI:3804504 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 involved_in ISO (PMID:30021165) RGD PMID:30021165 NCBI chr 7:48,548,932...49,045,852
Ensembl chr 7:48,867,664...49,042,455
JBrowse link
G Sdk1 sidekick cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:5551515|PMID:24449909) RGD PMID:24449909 MGI:5551515 NCBI chr12:14,445,798...15,443,442
Ensembl chr12:14,449,010...15,098,786
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in IMP PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr10:93,811,350...94,132,418
Ensembl chr10:93,811,350...94,127,697
JBrowse link
regulation of dendritic spine morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:3525751 NCBI chr 9:67,234,612...67,284,504
Ensembl chr 9:67,234,303...67,282,600
JBrowse link
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 IMP RGD PMID:22328515 RGD:13703034 NCBI chr 8:77,107,355...77,237,483
Ensembl chr 8:77,107,536...77,237,483
JBrowse link
G Arc activity-regulated cytoskeleton-associated protein involved_in IGI PMID:15537891 ARUK-UCL PMID:15537891 RGD:13210528 NCBI chr 7:115,907,097...115,911,059
Ensembl chr 7:115,907,097...115,910,541
JBrowse link
G Arhgap33 Rho GTPase activating protein 33 IMP RGD PMID:24003235 RGD:13508596 NCBI chr 1:88,977,460...88,990,780
Ensembl chr 1:88,978,344...88,989,552
JBrowse link
G Arhgap44 Rho GTPase activating protein 44 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5582709|PMID:24352656)
GO_REF:0000107
RGD
Ensembl
PMID:24352656, PMID:21873635 GO_REF:0000107 MGI:5582709, RGD:13792537 NCBI chr10:51,501,547...51,669,546
Ensembl chr10:51,502,894...51,669,297
JBrowse link
G Cdk5 cyclin-dependent kinase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:3696283|PMID:17143272)
UniProt
RGD
PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3696283|PMID:17143272)
UniProt
RGD
PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr10:67,862,054...67,863,255
Ensembl chr10:67,862,054...67,863,255
JBrowse link
G Cfl1 cofilin 1 involved_in ISO
ISS
(PMID:24464040)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:24464040 GO_REF:0000024 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Dnm3 dynamin 3 IMP RGD PMID:15741233 RGD:8554738 NCBI chr13:79,906,711...80,379,967
Ensembl chr13:79,910,382...80,379,929
JBrowse link
G Epha4 Eph receptor A4 involved_in ISS
ISO
GO_REF:0000024
(MGI:3696283|PMID:17143272)
UniProt
RGD
PMID:17143272 GO_REF:0000024 MGI:3696283 NCBI chr 9:83,111,222...83,253,486
Ensembl chr 9:83,111,222...83,253,458
JBrowse link
G Kif1a kinesin family member 1A involved_in IMP PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr 9:100,171,851...100,253,626
Ensembl chr 9:100,171,772...100,253,609
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in IBA
ISO
ISS
PMID:21873635
UniProtKB:P23528 (MGI:5553024|PMID:24464040)
GO_REF:0000024
(PMID:21168496)
RGD
ParkinsonsUK-UCL
PMID:21168496 PMID:24464040, PMID:21873635 GO_REF:0000024 MGI:5553024, RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Lzts3 leucine zipper tumor suppressor family member 3 involved_in IMP
IBA
PMID:27252646
PMID:21873635
UniProt
GO_Central
PMID:27252646, PMID:21873635 RGD:13210540, RGD:13792537 NCBI chr 3:123,174,444...123,185,649
Ensembl chr 3:123,175,860...123,179,644
JBrowse link
G Nlgn3 neuroligin 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5286761|PMID:21808020)
BHF-UCL
RGD
PMID:21808020, PMID:21808020 GO_REF:0000024 MGI:5286761, RGD:8553412 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Pdlim5 PDZ and LIM domain 5 involved_in IDA PMID:19900557 UniProt PMID:19900557 RGD:8554803 NCBI chr 2:247,815,214...247,989,198
Ensembl chr 2:247,818,243...247,988,462
JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 involved_in ISO (PMID:30021165) RGD PMID:30021165 NCBI chr 7:48,548,932...49,045,852
Ensembl chr 7:48,867,664...49,042,455
JBrowse link
G Ppp1r9a protein phosphatase 1, regulatory subunit 9A IMP RGD PMID:15473970 RGD:10043779 NCBI chr 4:29,976,485...30,247,371
Ensembl chr 4:29,978,739...30,241,911
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5320264|PMID:21795692)
Ensembl
RGD
PMID:21795692, PMID:21795692 GO_REF:0000107 MGI:5320264, RGD:7349315 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IDA PMID:11502259 UniProt PMID:11502259 RGD:8554032 NCBI chr 6:106,052,212...106,163,249
Ensembl chr 6:106,039,991...106,163,302
JBrowse link
G Srcin1 SRC kinase signaling inhibitor 1 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:19146815)
UniProt
RGD
PMID:19146815, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:85,460,059...85,517,671
Ensembl chr10:85,460,059...85,517,683
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in IMP PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr10:93,811,350...94,132,418
Ensembl chr10:93,811,350...94,127,697
JBrowse link
G Zdhhc15 zinc finger DHHC-type palmitoyltransferase 15 involved_in IMP PMID:31189538 UniProt PMID:31189538 RGD:25671406 NCBI chr  X:75,433,957...75,566,531
Ensembl chr  X:75,439,778...75,566,481
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        dendritic spine development 127
          dendritic spine morphogenesis + 73
          negative regulation of dendritic spine development + 17
          positive regulation of dendritic spine development + 62
          regulation of dendritic spine development + 82
Path 2
Term Annotations click to browse term
  biological_process 19612
    developmental process 6792
      anatomical structure development 6265
        multicellular organism development 5747
          system development 5290
            nervous system development 2718
              neurogenesis 1935
                generation of neurons 1779
                  neuron differentiation 1611
                    neuron development 1322
                      neuron projection development 1158
                        dendrite development 315
                          dendritic spine development 127
                            dendritic spine morphogenesis + 73
                            negative regulation of dendritic spine development + 17
                            positive regulation of dendritic spine development + 62
                            regulation of dendritic spine development + 82
paths to the root