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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA damage response
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Accession:GO:0006974 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
Synonyms:exact_synonym: cellular DNA damage response;   cellular response to DNA damage stimulus;   response to genotoxic stress
 broad_synonym: response to DNA damage stimulus
 alt_id: GO:0034984

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DNA damage response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,209,760...1,320,046
Ensembl chrNW_004936490:1,209,967...1,319,802 		JBrowse link
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Acer2 alkaline ceramidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936652:1,289,445...1,329,236
Ensembl chrNW_004936652:1,289,382...1,329,409 		JBrowse link
G Aim2 absent in melanoma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936740:1,447,869...1,460,836
Ensembl chrNW_004936740:1,451,001...1,460,836 		JBrowse link
G Akt1 AKT serine/threonine kinase 1 involved_in ISO PMID:20605787 UniProt PMID:20605787 RGD:10402036 NCBI chrNW_004936621:620,163...639,115
Ensembl chrNW_004936621:620,074...639,093 		JBrowse link
G Alkbh7 alkB homolog 7 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936588:3,733,103...3,734,770
Ensembl chrNW_004936588:3,732,526...3,737,219 		JBrowse link
G Alkbh8 alkB homolog 8, tRNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:1,070,484...1,123,427
Ensembl chrNW_004936551:1,076,117...1,123,877 		JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 involved_in
NOT|involved_in		 IEA
ISO		 (MGI:5800654|PMID:27010503) Ensembl
UniProt		 PMID:27010503 GO_REF:0000107 MGI:5800654 NCBI chrNW_004936596:3,568,810...3,573,506
Ensembl chrNW_004936596:3,569,814...3,573,344 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Apc APC regulator of WNT signaling pathway involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:6,899,580...7,019,016
Ensembl chrNW_004936531:6,899,788...7,019,453 		JBrowse link
G Aplf aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Armt1 acidic residue methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:4,344,074...4,355,405
Ensembl chrNW_004936489:4,344,365...4,355,484 		JBrowse link
G Ash2l ASH2 like, histone lysine methyltransferase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17500065) MGI
Ensembl		 PMID:17500065 GO_REF:0000107 NCBI chrNW_004936710:1,489,483...1,519,469
Ensembl chrNW_004936710:1,489,522...1,518,849 		JBrowse link
G Atad5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Atf2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317)
(PMID:19061978)		 MGI
RGD
Ensembl
UniProt		 PMID:12915485 PMID:19061978 PMID:19151707 PMID:19557000 PMID:24550317 GO_REF:0000043 GO_REF:0000107 RGD:10053571 RGD:1599370 RGD:2316101 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Batf basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9454845)
(PMID:12952892)		 Ensembl
MGI		 PMID:9454845 PMID:12952892 GO_REF:0000107 NCBI chrNW_004936664:2,968,103...2,973,652
Ensembl chrNW_004936664:2,967,865...2,973,820 		JBrowse link
G Baz1b bromodomain adjacent to zinc finger domain 1B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936543:2,713,575...2,779,947
Ensembl chrNW_004936543:2,713,589...2,779,993 		JBrowse link
G Bbc3 BCL2 binding component 3 involved_in ISO (MGI:4944151|PMID:20818388) BHF-UCL PMID:20818388 MGI:4944151 NCBI chrNW_004936664:962,115...966,797 JBrowse link
G Bccip BRCA2 and CDKN1A interacting protein involved_in ISO (MGI:5288472|PMID:21966279) CACAO PMID:21966279 MGI:5288472 NCBI chrNW_004936486:13,816,805...13,831,055 JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921 		JBrowse link
G Bcl3 BCL3 transcription coactivator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,410,848...1,427,822
Ensembl chrNW_004936706:1,416,249...1,427,407 		JBrowse link
G Bcl6 BCL6 transcription repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:2,371,976...2,395,034
Ensembl chrNW_004936578:2,371,945...2,395,071 		JBrowse link
G Bclaf1 BCL2 associated transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936560:3,681,145...3,711,831
Ensembl chrNW_004936560:3,680,657...3,712,004 		JBrowse link
G Blm BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Bod1l1 biorientation of chromosomes in cell division 1 like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:13,927,605...13,975,722
Ensembl chrNW_004936477:13,930,161...13,974,589 		JBrowse link
G Brat1 BRCA1 associated ATM activator 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936823:393,878...404,348
Ensembl chrNW_004936823:393,842...404,366 		JBrowse link
G Brca1 BRCA1 DNA repair associated acts_upstream_of_or_within ISO (PMID:23271346) MGI PMID:23271346 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated involved_in ISO (MGI:3818835|PMID:12410562) UniProt PMID:12410562 MGI:3818835 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brd4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chrNW_004936596:5,176,682...5,246,102
Ensembl chrNW_004936596:5,177,147...5,246,518 		JBrowse link
G Brsk1 BR serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:541,831...567,197
Ensembl chrNW_004936886:546,222...570,521 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8944033) MGI
Ensembl		 PMID:8944033 GO_REF:0000107 NCBI chrNW_004936567:1,310,525...1,314,469
Ensembl chrNW_004936567:1,309,658...1,314,515 		JBrowse link
G Casp3 caspase 3 acts_upstream_of_or_within ISO (PMID:11092819) MGI PMID:11092819 NCBI chrNW_004936554:4,571,072...4,593,765 JBrowse link
G Casp9 caspase 9 involved_in
acts_upstream_of_or_within		 ISO (PMID:15657060)
(PMID:11092819)		 UniProt
MGI		 PMID:11092819 PMID:15657060 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Cbl Cbl proto-oncogene ISO RGD PMID:19546888 RGD:11038823 NCBI chrNW_004936542:4,136,389...4,235,746
Ensembl chrNW_004936542:4,136,511...4,228,288 		JBrowse link
G Cbx1 chromobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,242,949...13,261,195
Ensembl chrNW_004936490:13,242,949...13,261,195 		JBrowse link
G Cbx3 chromobox 3 involved_in ISO (PMID:27248496) UniProt PMID:27248496 NCBI chrNW_004936478:2,981,218...2,989,329
Ensembl chrNW_004936478:2,981,228...2,989,324 		JBrowse link
G Cbx5 chromobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,441,770...11,480,924
Ensembl chrNW_004936512:11,450,060...11,480,727 		JBrowse link
G Ccdc13 coiled-coil domain containing 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24816561) Ensembl
SYSCILIA_CCNET		 PMID:24816561 GO_REF:0000107 NCBI chrNW_004936695:2,350,668...2,404,882
Ensembl chrNW_004936695:2,350,640...2,402,557 		JBrowse link
G Ccnd1 cyclin D1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936599:973,838...983,316 JBrowse link
G Ccnk cyclin K acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:22012619) MGI
Ensembl		 PMID:22012619 GO_REF:0000107 NCBI chrNW_004936604:3,283,996...3,316,516
Ensembl chrNW_004936604:3,283,715...3,319,572 		JBrowse link
G Cdk1 cyclin dependent kinase 1 involved_in ISO (PMID:19202191) UniProt PMID:19202191 NCBI chrNW_004936614:2,300,682...2,313,611
Ensembl chrNW_004936614:2,300,513...2,313,624 		JBrowse link
G Cdk2 cyclin dependent kinase 2 ISO RGD PMID:19151707 RGD:10053571 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Cdk3 cyclin dependent kinase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
Ensembl		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936594:1,159,644...1,164,735
Ensembl chrNW_004936594:1,160,268...1,169,103 		JBrowse link
G Cdk5 cyclin dependent kinase 5 ISO RGD PMID:19151707 RGD:10053571 NCBI chrNW_004936527:6,478,934...6,483,848
Ensembl chrNW_004936527:6,478,982...6,483,866 		JBrowse link
G Cdk6 cyclin dependent kinase 6 ISO RGD PMID:19151707 RGD:10053571 NCBI chrNW_004936803:1,025,047...1,229,396
Ensembl chrNW_004936803:1,024,779...1,227,516 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12952892) Ensembl
MGI
TreeGrafter		 PMID:12952892 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Cdkn2aip CDKN2A interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:5,638,671...5,642,276
Ensembl chrNW_004936554:5,639,448...5,642,092 		JBrowse link
G Cgas cyclic GMP-AMP synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936859:797,469...807,036 JBrowse link
G Chchd6 coiled-coil-helix-coiled-coil-helix domain containing 6 involved_in ISO (PMID:22228767) UniProt PMID:22228767
G Chd1l chromodomain helicase DNA binding protein 1 like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004937024:164,309...216,967
Ensembl chrNW_004937024:164,327...216,851 		JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19137022) Ensembl
MGI		 PMID:19137022 GO_REF:0000107 NCBI chrNW_004936483:9,803,887...9,931,132
Ensembl chrNW_004936483:9,803,623...9,931,272 		JBrowse link
G Chek1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790307), (PMID:12529385) Ensembl
MGI
UniProt		 PMID:11790307 PMID:12529385 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
Ensembl		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Cib1 calcium and integrin binding 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,963,863...15,967,458
Ensembl chrNW_004936483:15,960,036...15,968,094 		JBrowse link
G Cip2a cellular inhibitor of PP2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936645:2,224,034...2,261,970
Ensembl chrNW_004936645:2,224,587...2,261,881 		JBrowse link
G Clock clock circadian regulator involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:18411307), (PMID:18583988), (PMID:20545769), (PMID:30898438), (PMID:35597237) UniProt PMID:18411307 PMID:18583988 PMID:20545769 PMID:30898438 PMID:35597237 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Ctc1 CST telomere replication complex component 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22531781) Ensembl
MGI		 PMID:22531781 GO_REF:0000107 NCBI chrNW_004936595:1,456,911...1,476,331
Ensembl chrNW_004936595:1,454,508...1,476,593 		JBrowse link
G Ctla4 cytotoxic T-lymphocyte associated protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:484,356...489,643
Ensembl chrNW_004936631:484,356...489,643 		JBrowse link
G Cul4a cullin 4A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:409,083...432,442
Ensembl chrNW_004936472:408,659...432,379 		JBrowse link
G Cul4b cullin 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936479:9,490,717...9,535,998
Ensembl chrNW_004936479:9,479,133...9,534,262 		JBrowse link
G CUNH10orf90 chromosome unknown C10orf90 homolog involved_in ISO (MGI:4455105|PMID:20154723) UniProt PMID:20154723 MGI:4455105 NCBI chrNW_004936486:14,311,976...14,499,733
Ensembl chrNW_004936486:14,311,431...14,499,902 		JBrowse link
G Dcun1d5 defective in cullin neddylation 1 domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:4,936,337...4,966,053
Ensembl chrNW_004936551:4,936,293...4,966,088 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)		 ComplexPortal PMID:22118460 MGI:6867266 NCBI chrNW_004936562:1,960,406...1,974,809
Ensembl chrNW_004936562:1,960,406...1,974,867 		JBrowse link
G Ddias DNA damage induced apoptosis suppressor acts_upstream_of_or_within ISO (PMID:17515607) MGI PMID:17515607 NCBI chrNW_004936498:11,115,055...11,127,215
Ensembl chrNW_004936498:11,115,209...11,128,948 		JBrowse link
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Dele1 DAP3 binding cell death enhancer 1 involved_in ISO (PMID:37832546) UniProt PMID:37832546 NCBI chrNW_004936504:12,247,584...12,259,962
Ensembl chrNW_004936504:12,245,776...12,259,851 		JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit involved_in ISO (PMID:34188037) UniProt PMID:34188037 NCBI chrNW_004936619:3,977,307...4,014,490
Ensembl chrNW_004936619:3,977,144...4,014,273 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,347,991...1,389,836
Ensembl chrNW_004936557:1,347,991...1,389,836 		JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:5,542,873...5,555,469
Ensembl chrNW_004936545:5,542,803...5,554,136 		JBrowse link
G Endog endonuclease G involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,282,115...16,285,486
Ensembl chrNW_004936487:16,282,398...16,285,418 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11707424), (PMID:15692571), (PMID:15979950)
(PMID:9197240)		 Ensembl
MGI		 PMID:9197240 PMID:11707424 PMID:15692571 PMID:15979950 GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11408355), (PMID:15979950) Ensembl
MGI		 PMID:11408355 PMID:15979950 GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:11,962,161...11,975,164
Ensembl chrNW_004936491:11,962,087...11,979,349 		JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO (PMID:22266823), (PMID:22343915), (PMID:22396592), (PMID:22705371) UniProt PMID:22266823 PMID:22343915 PMID:22396592 PMID:22705371 NCBI chrNW_004936737:1,296,152...1,300,038 JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,482,649...3,488,331
Ensembl chrNW_004936581:3,480,412...3,490,195 		JBrowse link
G Fam178b family with sequence similarity 178 member B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936744:808,845...894,128
Ensembl chrNW_004936744:810,446...893,049 		JBrowse link
G Fancd2 FA complementation group D2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12893777) Ensembl
MGI		 PMID:12893777 GO_REF:0000107 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Fancf FA complementation group F acts_upstream_of_or_within ISO (PMID:21915857) MGI PMID:21915857 NCBI chrNW_004936654:3,298,193...3,301,251 JBrowse link
G Fancg FA complementation group G involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11823446)
(PMID:11719385)		 Ensembl
MGI
TreeGrafter		 PMID:11719385 PMID:11823446 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:3,103,912...3,110,246
Ensembl chrNW_004936524:3,104,176...3,109,779 		JBrowse link
G Fancl FA complementation group L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:4,057,312...4,119,966
Ensembl chrNW_004936491:4,029,388...4,119,976 		JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Fbxo31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:1,801,539...1,831,988
Ensembl chrNW_004936641:1,801,548...1,830,440 		JBrowse link
G Fbxo45 F-box protein 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936784:1,162,950...1,177,407
Ensembl chrNW_004936784:1,162,950...1,179,068 		JBrowse link
G Fbxo5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:5,589,621...5,602,221
Ensembl chrNW_004936489:5,589,538...5,600,539 		JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chrNW_004936689:2,261,163...2,449,951
Ensembl chrNW_004936689:2,259,477...2,344,764 		JBrowse link
G Fh fumarate hydratase involved_in ISO (PMID:20231875), (PMID:26237645) UniProt PMID:20231875 PMID:26237645 NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Flywch1 FLYWCH-type zinc finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,212,517...1,236,576
Ensembl chrNW_004936694:1,215,774...1,236,606 		JBrowse link
G Fmn2 formin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:9,832,790...10,169,488
Ensembl chrNW_004936526:9,833,128...10,169,267 		JBrowse link
G Foxo1 forkhead box O1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Foxp1 forkhead box P1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:2,631,781...3,146,104
Ensembl chrNW_004936603:2,632,274...2,830,324 		JBrowse link
G Gadd45a growth arrest and DNA damage inducible alpha involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936591:3,998,359...4,001,491
Ensembl chrNW_004936591:3,998,340...4,001,830 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:6,610,565...6,618,509
Ensembl chrNW_004936537:6,610,565...6,618,450 		JBrowse link
G Gnb1l G protein subunit beta 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:3,691,327...3,760,906
Ensembl chrNW_004936619:3,691,074...3,761,425 		JBrowse link
G Gnl1 G protein nucleolar 1 (putative) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:228,680...239,253
Ensembl chrNW_004936837:224,487...239,127 		JBrowse link
G Helb DNA helicase B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
G Herc2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:38,419,147...38,606,312
Ensembl chrNW_004936471:38,419,129...38,606,323 		JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011 		JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:619,120...633,590
Ensembl chrNW_004936541:620,754...633,499 		JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:10,513,908...10,528,281
Ensembl chrNW_004936492:10,513,908...10,528,285 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790307) Ensembl
MGI		 PMID:11790307 GO_REF:0000107 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Ier3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936809:1,280,254...1,306,964
Ensembl chrNW_004936809:1,257,654...1,301,813 		JBrowse link
G Inip INTS3 and NABP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:813,912...830,768
Ensembl chrNW_004936559:813,940...830,763 		JBrowse link
G Ints3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,511,364...3,553,441
Ensembl chrNW_004936580:3,511,311...3,553,756 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Kin Kin17 DNA and RNA binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:7,031,160...7,058,696
Ensembl chrNW_004936484:7,030,862...7,060,125 		JBrowse link
G LOC101958033 uncharacterized LOC101958033 acts_upstream_of_or_within ISO (PMID:21824519) MGI PMID:21824519 NCBI chrNW_004936653:3,268,229...3,543,173 JBrowse link
G LOC101959362 peroxisomal membrane protein PEX14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:4,313,186...4,462,462
Ensembl chrNW_004936623:4,313,147...4,462,528
Ensembl chrNW_004936623:4,313,147...4,462,528 		JBrowse link
G LOC101966907 histone H2AX involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346 		JBrowse link
G LOC101967900 lysine-specific demethylase 4D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24550317) Ensembl
MGI		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936674:53,200...73,042 JBrowse link
G LOC101969875 histone PARylation factor 1-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936504:5,914,204...5,915,314 JBrowse link
G LOC101970824 histone PARylation factor 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936516:1,763,935...1,785,538 JBrowse link
G LOC101974917 zinc finger protein 432 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937026:214,385...237,983
Ensembl chrNW_004937026:228,210...241,723 		JBrowse link
G LOC101976824 nuclear factor of activated T cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:3,453,475...3,579,292
Ensembl chrNW_004936514:3,467,178...3,578,882 		JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936496:2,578,598...2,698,165
Ensembl chrNW_004936496:2,637,958...2,700,055 		JBrowse link
G Macrod1 mono-ADP ribosylhydrolase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:5,018,636...5,154,844
Ensembl chrNW_004936599:5,018,770...5,154,491 		JBrowse link
G Macrod2 mono-ADP ribosylhydrolase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:3,917,060...5,859,527
Ensembl chrNW_004936485:3,919,525...5,859,251 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18694567) Ensembl
MGI		 PMID:18694567 GO_REF:0000107 NCBI chrNW_004936481:18,903,153...18,928,195
Ensembl chrNW_004936481:18,903,153...18,928,195 		JBrowse link
G Mapk1 mitogen-activated protein kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383658) Ensembl
MGI		 PMID:15383658 GO_REF:0000107 NCBI chrNW_004936619:1,889,841...1,932,646
Ensembl chrNW_004936619:1,889,708...1,932,646 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20212154) Ensembl
MGI		 PMID:20212154 GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211
Ensembl chrNW_004936476:23,237,277...23,310,232 		JBrowse link
G Mapk15 mitogen-activated protein kinase 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,420,850...8,425,996
Ensembl chrNW_004936470:8,420,732...8,425,884 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383658) Ensembl
MGI		 PMID:15383658 GO_REF:0000107 NCBI chrNW_004936501:12,342,670...12,390,650
Ensembl chrNW_004936501:12,384,804...12,392,180 		JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,867,182...5,911,207
Ensembl chrNW_004936557:5,867,211...5,911,213 		JBrowse link
G Mapt microtubule associated protein tau involved_in ISO (PMID:21131359)
(MGI:5816445|PMID:21131359)		 ParkinsonsUK-UCL PMID:21131359 MGI:5816445 NCBI chrNW_004936541:2,381,411...2,479,984 JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chrNW_004936580:803,452...806,966
Ensembl chrNW_004936580:804,903...806,796 		JBrowse link
G Mcm10 minichromosome maintenance 10 replication initiation factor involved_in ISO (PMID:24726359) UniProt PMID:24726359 NCBI chrNW_004937104:132,692...160,965 JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:13,072,791...13,108,392
Ensembl chrNW_004936485:13,072,600...13,108,411 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:22771115)
(MGI:5437561|PMID:22771120)		 UniProt PMID:22771115 PMID:22771120 MGI:5437561 NCBI chrNW_004936658:1,657,226...1,734,150 JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:363,870...379,406
Ensembl chrNW_004936837:362,928...378,759 		JBrowse link
G Men1 menin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,504,489...4,510,085
Ensembl chrNW_004936599:4,504,397...4,510,555 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:646,835...661,312
Ensembl chrNW_004936880:644,079...661,544 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10657972), (PMID:9560238) RGD
MGI
Ensembl		 PMID:9560238 PMID:10657972 PMID:12815001 GO_REF:0000107 RGD:2316926 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10657972), (PMID:9560238)
(PMID:14562041), (PMID:16204034)		 Ensembl
MGI		 PMID:9560238 PMID:10657972 PMID:14562041 PMID:16204034 GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16204034) UniProt
MGI
Ensembl		 PMID:16204034 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
G MNDA myeloid cell nuclear differentiation antigen involved_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936740:1,539,648...1,554,608 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936755:133,315...171,507
Ensembl chrNW_004936755:130,983...171,492 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17500065) MGI
Ensembl		 PMID:17500065 GO_REF:0000107 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chrNW_004936739:926,678...955,024 JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14744764)
(PMID:10097137), (PMID:10720738), (PMID:11429706)		 Ensembl
MGI		 PMID:10097137 PMID:10720738 PMID:11429706 PMID:14744764 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh3 mutS homolog 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561 		JBrowse link
G Msh6 mutS homolog 6 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Msl2 MSL complex subunit 2 involved_in ISO (PMID:19033443), (PMID:23874665) UniProt PMID:19033443 PMID:23874665 NCBI chrNW_004936529:9,035,198...9,068,567
Ensembl chrNW_004936529:9,033,895...9,068,567 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:12,357,637...12,458,728
Ensembl chrNW_004936480:12,357,637...12,458,728 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20212154) Ensembl
MGI		 PMID:20212154 GO_REF:0000107 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISO (PMID:19683501) UniProt PMID:19683501 NCBI chrNW_004936506:6,608,333...6,616,076 JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
G Ncoa6 nuclear receptor coactivator 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17500065) MGI
Ensembl		 PMID:17500065 GO_REF:0000107 NCBI chrNW_004936561:5,905,905...5,982,824
Ensembl chrNW_004936561:5,906,485...5,982,268 		JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:17,254,777...17,374,725
Ensembl chrNW_004936471:17,252,234...17,374,804 		JBrowse link
G Nek1 NIMA related kinase 1 acts_upstream_of_or_within ISO (PMID:15604234) MGI PMID:15604234 NCBI chrNW_004936516:1,508,800...1,666,841
Ensembl chrNW_004936516:1,508,811...1,666,869 		JBrowse link
G Nek4 NIMA related kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:3,499,858...3,527,918
Ensembl chrNW_004936473:3,499,754...3,528,329 		JBrowse link
G Nfat5 nuclear factor of activated T cells 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,658,917...19,758,936
Ensembl chrNW_004936475:19,660,201...19,758,930 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450 		JBrowse link
G Nkx3-1 NK3 homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:7,087,677...7,091,334
Ensembl chrNW_004936555:7,088,577...7,091,334 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Npas2 neuronal PAS domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:96,312...176,395
Ensembl chrNW_004936661:95,752...210,097 		JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:17,473,787...17,519,278
Ensembl chrNW_004936488:17,473,607...17,519,536 		JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:10,957,283...10,979,930
Ensembl chrNW_004936501:10,957,418...10,986,535 		JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:10,873,690...10,889,064
Ensembl chrNW_004936486:10,873,146...10,887,346 		JBrowse link
G Nuggc nuclear GTPase, germinal center associated acts_upstream_of_or_within ISO (PMID:22833677) MGI PMID:22833677 NCBI chrNW_004936675:885,015...931,657
Ensembl chrNW_004936675:885,039...920,253 		JBrowse link
G NUPR2 nuclear protein 2, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936543:7,852,069...7,852,363 JBrowse link
G Oard1 O-acyl-ADP-ribose deacylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:18,751,344...18,757,094
Ensembl chrNW_004936476:18,751,364...18,757,094 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19506022) MGI
Ensembl		 PMID:19506022 GO_REF:0000107 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:5,154,988...5,163,919
Ensembl chrNW_004936599:5,153,993...5,173,046 		JBrowse link
G Pagr1 PAXIP1 associated glutamate rich protein 1 involved_in ISO (MGI:3844416|PMID:19124460) UniProt PMID:19124460 MGI:3844416 NCBI chrNW_004936501:12,657,092...12,660,106
Ensembl chrNW_004936501:12,656,435...12,660,067 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:6,001,126...6,135,663
Ensembl chrNW_004936498:6,001,014...6,086,614 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO (PMID:15282315) MGI PMID:15282315 NCBI chrNW_004936728:428,028...538,413
Ensembl chrNW_004936728:428,028...541,530 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
UniProt
Ensembl
RGD		 PMID:15857403 PMID:24550317 GO_REF:0000107 GO_REF:0000117 RGD:1601082 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17500065) Ensembl
MGI		 PMID:17500065 GO_REF:0000107 NCBI chrNW_004936527:9,440,129...9,488,215
Ensembl chrNW_004936527:9,440,036...9,484,245 		JBrowse link
G Paxx PAXX non-homologous end joining factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:951,256...952,804
Ensembl chrNW_004936669:951,261...952,769 		JBrowse link
G Pclaf PCNA clamp associated factor involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:24,797,291...24,812,196
Ensembl chrNW_004936471:24,797,393...24,808,227 		JBrowse link
G Pias1 protein inhibitor of activated STAT 1 involved_in ISO (PMID:36050397) UniProt PMID:36050397 NCBI chrNW_004936471:27,925,153...28,055,632
Ensembl chrNW_004936471:27,925,153...28,055,632 		JBrowse link
G Pidd1 p53-induced death domain protein 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936888:565,889...571,273
Ensembl chrNW_004936888:565,912...571,247 		JBrowse link
G Pierce1 piercer of microtubule wall 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21159655) Ensembl
MGI		 PMID:21159655 GO_REF:0000107 NCBI chrNW_004936669:2,067,544...2,072,052
Ensembl chrNW_004936669:2,067,612...2,071,788 		JBrowse link
G Plk3 polo like kinase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:26,026,878...26,032,098
Ensembl chrNW_004936474:26,026,842...26,032,218 		JBrowse link
G Plk5 polo like kinase 5 (inactive) involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:826,473...838,818 JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (PMID:12952892) MGI PMID:12952892 NCBI chrNW_004936497:4,985,995...4,986,720 JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936506:8,118,816...8,197,040
Ensembl chrNW_004936506:8,119,494...8,197,768 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component acts_upstream_of_or_within ISO (PMID:16204034) MGI PMID:16204034 NCBI chrNW_004936750:439,396...468,747 JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO (MGI:5780352|PMID:26774286) UniProt PMID:26774286 MGI:5780352 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Polb DNA polymerase beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936559:220,941...222,783 JBrowse link
G Poli DNA polymerase iota involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936497:9,490,048...9,512,475
Ensembl chrNW_004936497:9,487,917...9,512,436 		JBrowse link
G Polk DNA polymerase kappa involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Ppp4r3a protein phosphatase 4 regulatory subunit 3A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936488:18,423,353...18,467,363
Ensembl chrNW_004936488:18,422,741...18,467,430 		JBrowse link
G Ppp4r3b protein phosphatase 4 regulatory subunit 3B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936491:1,917,559...1,981,954
Ensembl chrNW_004936491:1,918,637...1,981,954 		JBrowse link
G Prap1 proline rich acidic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,477,278...19,480,387
Ensembl chrNW_004936486:19,477,453...19,480,297 		JBrowse link
G Prkcd protein kinase C delta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:3,892,625...3,923,467
Ensembl chrNW_004936473:3,892,366...3,923,515 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 involved_in ISO (PMID:15741314), (PMID:16294045) UniProt PMID:15741314 PMID:16294045 NCBI chrNW_004936664:3,492,032...3,502,738
Ensembl chrNW_004936664:3,491,920...3,504,667 		JBrowse link
G Psen1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12460542) Ensembl
MGI		 PMID:12460542 GO_REF:0000107 NCBI chrNW_004936488:2,464,623...2,528,807
Ensembl chrNW_004936488:2,464,527...2,530,065 		JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:404,921...503,783
Ensembl chrNW_004936491:404,912...504,326 		JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15297881) Ensembl
MGI
UniProt		 PMID:15297881 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936480:216,216...252,178
Ensembl chrNW_004936480:216,208...252,070 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25023518)
(PMID:12509447)		 MGI
Ensembl
UniProt		 PMID:12509447 PMID:25023518 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936602:4,030,353...4,134,119
Ensembl chrNW_004936602:4,030,459...4,081,931 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12815074) Ensembl
MGI		 PMID:12815074 GO_REF:0000107 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12815074) Ensembl
MGI		 PMID:12815074 GO_REF:0000107 NCBI chrNW_004936559:5,224,679...5,264,853
Ensembl chrNW_004936559:5,226,223...5,264,491 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in
acts_upstream_of_or_within		 ISO
IEA		 cyclophosphamide
(PMID:17500065)		 RGD
Ensembl
MGI		 PMID:11056294 PMID:17500065 GO_REF:0000107 RGD:727220 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:26681308)
(PMID:17996710), (PMID:17996711), (PMID:23509288), (PMID:25585578), (PMID:27239033)		 UniProt PMID:17996710 PMID:17996711 PMID:23509288 PMID:25585578 PMID:26681308 More... NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rad51d RAD51 paralog D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20813759) Ensembl
MGI		 PMID:20813759 GO_REF:0000107 NCBI chrNW_004936538:119,409...132,830
Ensembl chrNW_004936538:119,326...134,758 		JBrowse link
G Rad54b RAD54 homolog B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19061978)
(PMID:16428451)		 Ensembl
MGI		 PMID:16428451 PMID:19061978 GO_REF:0000107 NCBI chrNW_004936544:7,375,566...7,475,319
Ensembl chrNW_004936544:7,373,508...7,475,353 		JBrowse link
G Rad54l RAD54 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16428451)
(PMID:19061978)		 Ensembl
MGI		 PMID:16428451 PMID:19061978 GO_REF:0000107 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rassf1 Ras association domain family member 1 involved_in ISO (PMID:18566590) UniProt PMID:18566590 NCBI chrNW_004936529:1,857,177...1,866,198
Ensembl chrNW_004936529:1,857,145...1,867,260 		JBrowse link
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17500065) MGI
Ensembl		 PMID:17500065 GO_REF:0000107 NCBI chrNW_004936557:7,260,342...7,291,721
Ensembl chrNW_004936557:7,260,290...7,291,721 		JBrowse link
G Rbbp6 RB binding protein 6, ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,966,074...8,997,027
Ensembl chrNW_004936501:8,966,068...8,998,000 		JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936552:3,291,727...3,304,332
Ensembl chrNW_004936552:3,291,755...3,304,332 		JBrowse link
G Rbx1 ring-box 1 involved_in ISO (PMID:22118460)
(MGI:6867266|PMID:22118460)		 ComplexPortal PMID:22118460 MGI:6867266 NCBI chrNW_004936492:872,316...890,860
Ensembl chrNW_004936492:873,576...890,835 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936679:65,852...183,820
Ensembl chrNW_004936679:65,769...222,984 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:19500350), (PMID:20550933), (PMID:22373579), (PMID:22508508), (PMID:22980979) UniProt PMID:19500350 PMID:20550933 PMID:22373579 PMID:22508508 PMID:22980979 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:3,675,075...3,783,514
Ensembl chrNW_004936498:3,685,572...3,776,466 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:20550933), (PMID:21911360), (PMID:22266820), (PMID:22373579), (PMID:22980979)
(MGI:5293246|PMID:21857671)		 UniProt PMID:20550933 PMID:21857671 PMID:21911360 PMID:22266820 PMID:22373579 More... MGI:5293246 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Rpa1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
G Setd7 SET domain containing 7, histone lysine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23509280) MGI
Ensembl		 PMID:23509280 GO_REF:0000107 NCBI chrNW_004936535:8,094,479...8,143,108
Ensembl chrNW_004936535:8,094,178...8,137,580 		JBrowse link
G Setx senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:18,858,384...18,945,253
Ensembl chrNW_004936487:18,855,744...18,944,158 		JBrowse link
G Sfpq splicing factor proline and glutamine rich acts_upstream_of_or_within ISO (PMID:20813759) MGI PMID:20813759 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Sgk1 serum/glucocorticoid regulated kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383658) Ensembl
MGI		 PMID:15383658 GO_REF:0000107 NCBI chrNW_004936560:1,979,804...2,009,167
Ensembl chrNW_004936560:1,979,808...2,088,329 		JBrowse link
G Shprh SNF2 histone linker PHD RING helicase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25023518) MGI
TreeGrafter
Ensembl		 PMID:25023518 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936625:533,870...617,936
Ensembl chrNW_004936625:533,849...617,907 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sirt4 sirtuin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:628,875...633,425
Ensembl chrNW_004936668:626,938...633,466 		JBrowse link
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936523:8,563,662...8,634,576
Ensembl chrNW_004936523:8,563,410...8,634,585 		JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,715,504...4,766,273
Ensembl chrNW_004936600:4,721,327...4,765,915 		JBrowse link
G Smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:6,388,556...6,483,293
Ensembl chrNW_004936503:6,388,487...6,483,333 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:13,191,389...13,250,788
Ensembl chrNW_004936493:13,191,455...13,252,578 		JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:4,672,871...4,753,749
Ensembl chrNW_004936501:4,672,866...4,753,739 		JBrowse link
G Spata18 spermatogenesis associated 18 involved_in ISO (PMID:21264221) UniProt PMID:21264221 NCBI chrNW_004936482:15,178,667...15,262,897 JBrowse link
G Spdya speedy/RINGO cell cycle regulator family member A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:3,937,297...3,967,884
Ensembl chrNW_004936493:3,935,146...3,969,053 		JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Spindoc spindlin interactor and repressor of chromatin binding involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:5,299,590...5,310,663
Ensembl chrNW_004936599:5,301,537...5,310,553 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Stk11 serine/threonine kinase 11 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:579,816...601,033
Ensembl chrNW_004936588:579,816...603,654 		JBrowse link
G Stk38 serine/threonine kinase 38 involved_in ISO (PMID:32537488) UniProt PMID:32537488 NCBI chrNW_004936476:22,842,477...22,891,057
Ensembl chrNW_004936476:22,842,477...22,891,057 		JBrowse link
G Stxbp4 syntaxin binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:7,406,130...7,553,389
Ensembl chrNW_004936490:7,406,124...7,554,118 		JBrowse link
G Susd6 sushi domain containing 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:12,809,720...12,910,792
Ensembl chrNW_004936495:12,809,663...12,910,859 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23509280) MGI
Ensembl		 PMID:23509280 GO_REF:0000107 NCBI chrNW_004936721:646,778...661,144
Ensembl chrNW_004936721:646,772...661,091 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO (PMID:24289924) ParkinsonsUK-UCL PMID:24289924 NCBI chrNW_004936762:189,710...271,759 JBrowse link
G Tank TRAF family member associated NFKB activator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:17,665,604...17,754,845
Ensembl chrNW_004936469:17,665,593...17,742,422 		JBrowse link
G Taok1 TAO kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:5,531,639...5,668,119
Ensembl chrNW_004936538:5,531,633...5,659,239 		JBrowse link
G Taok2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,477,032...12,495,298
Ensembl chrNW_004936501:12,477,032...12,495,501 		JBrowse link
G Taok3 TAO kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:2,116,804...2,305,331
Ensembl chrNW_004936668:2,222,866...2,304,151 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tipin TIMELESS interacting protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
G Tlk2 tousled like kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:3,303,563...3,422,093
Ensembl chrNW_004936541:3,302,872...3,423,058 		JBrowse link
G Top2a DNA topoisomerase II alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:15,441,463...15,465,692
Ensembl chrNW_004936490:15,441,575...15,466,978 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15735665) Ensembl
MGI		 PMID:15735665 GO_REF:0000107 NCBI chrNW_004936524:1,219,101...1,229,937
Ensembl chrNW_004936524:1,219,907...1,229,723 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14744935)
(PMID:17591690)
(PMID:14744935), (PMID:15383658)
(PMID:12952892)
(PMID:11092819)		 MGI
Ensembl		 PMID:11092819 PMID:12952892 PMID:14744935 PMID:15383658 PMID:17591690 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17500065) MGI
UniProt
Ensembl		 PMID:17500065 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Tp63 tumor protein p63 involved_in ISO (PMID:19451233) UniProt PMID:19451233 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729 		JBrowse link
G Tp73 tumor protein p73 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16044147) Ensembl
MGI		 PMID:16044147 GO_REF:0000107 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464 		JBrowse link
G Traip TRAF interacting protein involved_in ISO (PMID:26711499), (PMID:27462463) UniProt PMID:26711499 PMID:27462463 NCBI chrNW_004936529:1,434,629...1,466,382 JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20511593) Ensembl
MGI		 PMID:20511593 GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936525:6,539,234...6,690,457
Ensembl chrNW_004936525:6,539,191...6,690,457 		JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:504,406...520,295
Ensembl chrNW_004936877:501,743...520,316 		JBrowse link
G Uba1 ubiquitin like modifier activating enzyme 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936502:12,961,236...12,984,235
Ensembl chrNW_004936502:12,969,145...12,984,238 		JBrowse link
G Uba6 ubiquitin like modifier activating enzyme 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936582:780,911...901,734
Ensembl chrNW_004936582:780,892...869,026 		JBrowse link
G Uba7 ubiquitin like modifier activating enzyme 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:1,412,196...1,421,216
Ensembl chrNW_004936529:1,412,194...1,421,197 		JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:891,357...913,963
Ensembl chrNW_004936647:891,996...911,033 		JBrowse link
G Ube2e2 ubiquitin conjugating enzyme E2 E2 acts_upstream_of_or_within ISO (PMID:21628527) MGI PMID:21628527 NCBI chrNW_004936473:14,988,802...15,280,650 JBrowse link
G Ube2t ubiquitin conjugating enzyme E2 T involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:2,222,317...2,226,725
Ensembl chrNW_004936567:2,222,317...2,226,678 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,299,864...5,316,583
Ensembl chrNW_004936580:5,301,389...5,315,756 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,222,782...41,345,755
Ensembl chrNW_004936470:41,252,951...41,344,134 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936699:1,131,385...1,163,310
Ensembl chrNW_004936699:1,129,344...1,163,530 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:3,308,121...3,350,476
Ensembl chrNW_004936641:3,307,931...3,350,517 		JBrowse link
G Usp16 ubiquitin specific peptidase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:12,963,811...12,989,024
Ensembl chrNW_004936500:12,964,122...12,989,152 		JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO (PMID:17873522) UniProt PMID:17873522 NCBI chrNW_004936612:742,777...804,919
Ensembl chrNW_004936612:742,725...804,921 		JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:6,483,898...6,596,136
Ensembl chrNW_004936528:6,481,507...6,595,771 		JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:1,115,524...1,119,083
Ensembl chrNW_004936819:1,116,447...1,118,558 		JBrowse link
G Vav3 vav guanine nucleotide exchange factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936731:417,610...767,427
Ensembl chrNW_004936731:417,322...767,429 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:7,352,043...7,376,023
Ensembl chrNW_004936496:7,352,018...7,376,964 		JBrowse link
G Vrk1 VRK serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936604:1,011,048...1,097,388
Ensembl chrNW_004936604:1,011,052...1,097,403 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936613:2,793,706...2,862,984
Ensembl chrNW_004936613:2,794,732...2,865,913 		JBrowse link
G Wdr48 WD repeat domain 48 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24001775) Ensembl
MGI		 PMID:24001775 GO_REF:0000107 NCBI chrNW_004936473:28,307,913...28,351,727
Ensembl chrNW_004936473:28,307,875...28,354,279 		JBrowse link
G Wdr76 WD repeat domain 76 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:6,878,350...6,923,951
Ensembl chrNW_004936471:6,878,584...6,923,921 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Xiap X-linked inhibitor of apoptosis involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:6,677,533...6,724,800
Ensembl chrNW_004936479:6,677,526...6,722,116 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15010313) Ensembl
MGI		 PMID:15010313 GO_REF:0000107 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO RGD PMID:11056294 RGD:727220 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15979950)
(PMID:16777961)		 Ensembl
MGI		 PMID:15979950 PMID:16777961 GO_REF:0000107 NCBI chrNW_004936527:7,760,609...7,785,360
Ensembl chrNW_004936527:7,760,719...7,785,391 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:1,055,478...1,137,924
Ensembl chrNW_004936586:1,055,335...1,137,984 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 acts_upstream_of_or_within ISO (PMID:15979950) MGI PMID:15979950 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119)
(MGI:5009388|PMID:18026119)		 UniProt PMID:18026119 MGI:5009388 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) UniProt PMID:24657165 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
G Zbtb38 zinc finger and BTB domain containing 38 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:3,207,044...3,263,373
Ensembl chrNW_004936540:3,198,254...3,262,475 		JBrowse link
G Zbtb4 zinc finger and BTB domain containing 4 involved_in ISO (PMID:19448668) UniProt PMID:19448668 NCBI chrNW_004936595:736,873...753,386 JBrowse link
G Zbtb40 zinc finger and BTB domain containing 40 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:7,848,735...7,926,506
Ensembl chrNW_004936474:7,848,750...7,928,396 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,714,145...19,722,512
Ensembl chrNW_004936474:19,714,153...19,722,528 		JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:2,221,254...2,230,587
Ensembl chrNW_004936636:2,221,255...2,230,641 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15980864), (PMID:16079796), (PMID:21522133) Ensembl
MGI		 PMID:15980864 PMID:16079796 PMID:21522133 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
G Znf385a zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,562,635...11,585,026
Ensembl chrNW_004936512:11,561,435...11,585,402 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936751:1,807,867...1,817,780
Ensembl chrNW_004936751:1,807,867...1,819,272 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936581:1,328,685...1,332,713
Ensembl chrNW_004936581:1,328,685...1,332,728 		JBrowse link
G Hmga1 high mobility group AT-hook 1 involved_in ISO (PMID:19465398) UniProt PMID:19465398 NCBI chrNW_004936476:24,795,854...24,803,138
Ensembl chrNW_004936476:24,795,877...24,801,567 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3722031|PMID:17803946) UniProt PMID:17803946 MGI:3722031 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936751:478,978...622,818
Ensembl chrNW_004936751:478,300...622,820 		JBrowse link
G Lig1 DNA ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715 		JBrowse link
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936602:968,159...980,452
Ensembl chrNW_004936602:956,784...967,884 		JBrowse link
G Mpg N-methylpurine DNA glycosylase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9371767)
(PMID:15177041)		 InterPro
MGI
TreeGrafter
Ensembl		 PMID:9371767 PMID:15177041 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:783,408...791,109
Ensembl chrNW_004936501:783,475...791,146 		JBrowse link
G Mutyh mutY DNA glycosylase involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936474:26,484,316...26,492,652
Ensembl chrNW_004936474:26,481,211...26,493,019 		JBrowse link
G Neil1 nei like DNA glycosylase 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:34,184,273...34,192,675
Ensembl chrNW_004936471:34,186,729...34,192,501 		JBrowse link
G Neil3 nei like DNA glycosylase 3 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936516:7,739,191...7,781,735
Ensembl chrNW_004936516:7,739,157...7,782,024 		JBrowse link
G Nthl1 nth like DNA glycosylase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936694:1,993,443...2,000,323
Ensembl chrNW_004936694:1,993,443...2,000,333 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10570187)
(PMID:9207108)		 RGD
MGI
Ensembl
InterPro		 PMID:9207108 PMID:9801319 PMID:10570187 GO_REF:0000002 GO_REF:0000107 RGD:729091 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:11948190) MGI PMID:11948190 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11948190) Ensembl
MGI		 PMID:11948190 GO_REF:0000107 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Polb DNA polymerase beta involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Rpa1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936512:11,395,513...11,416,426
Ensembl chrNW_004936512:11,395,834...11,402,377 		JBrowse link
G Tdg thymine DNA glycosylase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:10,476,472...10,506,144
Ensembl chrNW_004936492:10,475,183...10,497,151 		JBrowse link
G Ung uracil DNA glycosylase involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:12167490 GO_REF:0000002 GO_REF:0000104 RGD:634481 NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726 		JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:6,483,898...6,596,136
Ensembl chrNW_004936528:6,481,507...6,595,771 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
InterPro		 PMID:17412650 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2302580 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:9927729) UniProt PMID:9927729 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Nthl1 nth like DNA glycosylase 1 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:1,993,443...2,000,323
Ensembl chrNW_004936694:1,993,443...2,000,333 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Tdg thymine DNA glycosylase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936492:10,476,472...10,506,144
Ensembl chrNW_004936492:10,475,183...10,497,151 		JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ung uracil DNA glycosylase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726 		JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:17412650 GO_REF:0000107 GO_REF:0000118 RGD:2302580 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen acts_upstream_of_or_within ISO (PMID:15177179) MGI PMID:15177179 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15177179) RGD
MGI
Ensembl		 PMID:15177179 PMID:17412650 GO_REF:0000107 RGD:2302580 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15177179) Ensembl
MGI
TreeGrafter		 PMID:15177179 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15177179) MGI
Ensembl		 PMID:15177179 GO_REF:0000107 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
G Poll DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,184,979...4,194,596
Ensembl chrNW_004936600:4,185,046...4,194,618 		JBrowse link
broken chromosome clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cip2a cellular inhibitor of PP2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936645:2,224,034...2,261,970
Ensembl chrNW_004936645:2,224,587...2,261,881 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
DNA alkylation repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936769:904,129...908,130
Ensembl chrNW_004936769:904,125...906,881 		JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936562:4,743,595...4,777,685
Ensembl chrNW_004936562:4,741,371...4,777,727 		JBrowse link
G Ascc1 activating signal cointegrator 1 complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936521:6,695,366...6,791,480
Ensembl chrNW_004936521:6,696,120...6,791,873 		JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936651:1,952,594...2,291,143
Ensembl chrNW_004936651:1,953,240...2,275,756 		JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936475:6,321,725...6,689,410
Ensembl chrNW_004936475:6,321,711...6,689,588 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:1554415) RGD
MGI
Ensembl		 PMID:1554415 PMID:15025514 GO_REF:0000107 RGD:2316914 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Otud4 OTU deubiquitinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:3,911,904...3,950,675
Ensembl chrNW_004936535:3,912,606...3,951,503 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,649,808...7,732,731
Ensembl chrNW_004936502:7,649,842...7,735,382 		JBrowse link
DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI
TreeGrafter		 PMID:12937170 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Atrip ATR interacting protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936529:245,134...264,456
Ensembl chrNW_004936529:245,092...264,351 		JBrowse link
G Cdc5l cell division cycle 5 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:15,647,470...15,698,095
Ensembl chrNW_004936476:15,648,678...15,698,106 		JBrowse link
G Chek1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10859164)
(PMID:12529385)		 InterPro
MGI
Ensembl		 PMID:10859164 PMID:12529385 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Chek2 checkpoint kinase 2 ISO RGD PMID:10435585 RGD:633752 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Clock clock circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,789,834...17,900,371
Ensembl chrNW_004936482:17,794,134...17,845,303 		JBrowse link
G Clspn claspin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,267,740...18,304,658
Ensembl chrNW_004936474:18,268,984...18,300,211 		JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,712,168...8,720,728
Ensembl chrNW_004936500:8,712,205...8,739,953 		JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936588:1,288,447...1,332,489
Ensembl chrNW_004936588:1,288,392...1,330,297 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,844,778...8,853,442
Ensembl chrNW_004936536:8,844,575...8,851,146 		JBrowse link
G E2f1 E2F transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:3,423,792...3,527,089
Ensembl chrNW_004936471:3,423,813...3,526,913 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Gnb1l G protein subunit beta 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:3,691,327...3,760,906
Ensembl chrNW_004936619:3,691,074...3,761,425 		JBrowse link
G Hinfp histone H4 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,072,771...4,083,973
Ensembl chrNW_004936542:4,072,624...4,084,064 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12529385) InterPro
MGI
Ensembl		 PMID:12529385 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Ints7 integrator complex subunit 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,389,728...1,456,397
Ensembl chrNW_004936557:1,389,728...1,457,042 		JBrowse link
G LOC101966907 histone H2AX involved_in
NOT|acts_upstream_of_or_within		 IEA
ISO		 (PMID:11934988) Ensembl
MGI		 PMID:11934988 GO_REF:0000107 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346 		JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:2,578,598...2,698,165
Ensembl chrNW_004936496:2,637,958...2,700,055 		JBrowse link
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:3,029,942...3,203,319
Ensembl chrNW_004936509:3,029,979...3,202,796 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211
Ensembl chrNW_004936476:23,237,277...23,310,232 		JBrowse link
G Nbn nibrin acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12529385) MGI
Ensembl		 PMID:12529385 GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,806,824...8,845,099
Ensembl chrNW_004936536:8,806,818...8,840,746 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Ptpn11 protein tyrosine phosphatase non-receptor type 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI		 PMID:12937170 GO_REF:0000107 NCBI chrNW_004936668:2,602,261...2,687,903
Ensembl chrNW_004936668:2,628,706...2,682,448 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936518:6,620,325...6,626,328
Ensembl chrNW_004936518:6,620,325...6,628,393 		JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936480:216,216...252,178
Ensembl chrNW_004936480:216,208...252,070 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936558:3,462,187...3,489,741
Ensembl chrNW_004936558:3,459,223...3,489,413 		JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936606:3,201,540...3,208,019
Ensembl chrNW_004936606:3,201,504...3,208,342 		JBrowse link
G Stk38 serine/threonine kinase 38 involved_in ISO (PMID:32537488) UniProt PMID:32537488 NCBI chrNW_004936476:22,842,477...22,891,057
Ensembl chrNW_004936476:22,842,477...22,891,057 		JBrowse link
G Tipin TIMELESS interacting protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17141802) Ensembl
MGI		 PMID:17141802 GO_REF:0000107 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
G Tiprl TOR signaling pathway regulator involved_in ISO (PMID:17384681) UniProt PMID:17384681 NCBI chrNW_004936481:18,050,020...18,072,906 JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18045533) Ensembl
MGI		 PMID:18045533 GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
G Ufl1 UFM1 specific ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936699:1,131,385...1,163,310
Ensembl chrNW_004936699:1,129,344...1,163,530 		JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936612:742,777...804,919
Ensembl chrNW_004936612:742,725...804,921 		JBrowse link
DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acer2 alkaline ceramidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936652:1,289,445...1,329,236
Ensembl chrNW_004936652:1,289,382...1,329,409 		JBrowse link
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Batf basic leucine zipper ATF-like transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:4,607,716...4,631,237
Ensembl chrNW_004936488:4,607,716...4,631,283 		JBrowse link
G Bcl3 BCL3 transcription coactivator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,410,848...1,427,822
Ensembl chrNW_004936706:1,416,249...1,427,407 		JBrowse link
G Foxo3 forkhead box O3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15383658) Ensembl
MGI		 PMID:15383658 GO_REF:0000107 NCBI chrNW_004936564:4,788,036...4,907,600
Ensembl chrNW_004936564:4,787,992...4,903,837 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:3,800,619...3,934,347
Ensembl chrNW_004936592:3,809,452...3,934,327 		JBrowse link
G Mdm4 MDM4 regulator of p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:268,151...299,494
Ensembl chrNW_004936567:268,151...299,494 		JBrowse link
G Mif macrophage migration inhibitory factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12878730) Ensembl
MGI		 PMID:12878730 GO_REF:0000107 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442 		JBrowse link
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chrNW_004936580:4,691,870...4,694,092 JBrowse link
G Myo6 myosin VI involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936788:1,125,332...1,264,372
Ensembl chrNW_004936788:1,174,544...1,262,746 		JBrowse link
G Ndrg1 N-myc downstream regulated 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:16,051,291...16,102,563
Ensembl chrNW_004936470:16,051,015...16,102,585 		JBrowse link
G Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 acts_upstream_of_or_within ISO (PMID:33323934) MGI PMID:33323934 NCBI chrNW_004936815:144,994...157,788
Ensembl chrNW_004936815:144,994...158,144 		JBrowse link
G Paxip1 PAX interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:9,440,129...9,488,215
Ensembl chrNW_004936527:9,440,036...9,484,245 		JBrowse link
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chrNW_004936490:2,139,201...2,183,850
Ensembl chrNW_004936490:2,139,078...2,184,602 		JBrowse link
G Sesn2 sestrin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,416,652...12,436,799
Ensembl chrNW_004936474:12,416,652...12,436,814 		JBrowse link
G Sp100 SP100 nuclear antigen involved_in ISO (PMID:14647468) BHF-UCL PMID:14647468 NCBI chrNW_004936525:6,136,343...6,231,051 JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17476307)
(PMID:11790307), (PMID:11884608)
(PMID:16199867)		 Ensembl
MGI		 PMID:11790307 PMID:11884608 PMID:16199867 PMID:17476307 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:500,815...503,158
Ensembl chrNW_004936668:500,813...503,148 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936641:3,308,121...3,350,476
Ensembl chrNW_004936641:3,307,931...3,350,517 		JBrowse link
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp2 caspase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:739,325...754,259
Ensembl chrNW_004936527:739,281...754,331 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Cradd CASP2 and RIPK1 domain containing adaptor with death domain involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936507:10,077,345...10,264,705
Ensembl chrNW_004936507:10,098,171...10,264,716 		JBrowse link
G E2f7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936568:5,206,135...5,245,324
Ensembl chrNW_004936568:5,206,135...5,244,450 		JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:21726810) UniProt PMID:21726810 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chrNW_004936580:4,691,870...4,694,092 JBrowse link
G Pcbp4 poly(rC) binding protein 4 involved_in ISO (PMID:10891498) UniProt PMID:10891498 NCBI chrNW_004936529:3,304,171...3,308,422
Ensembl chrNW_004936529:3,300,712...3,308,288 		JBrowse link
G Pidd1 p53-induced death domain protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936888:565,889...571,273
Ensembl chrNW_004936888:565,912...571,247 		JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma involved_in ISO (PMID:17245430) UniProt PMID:17245430 NCBI chrNW_004936835:54,478...192,486
Ensembl chrNW_004936835:96,930...192,756 		JBrowse link
G Prap1 proline rich acidic protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:19,477,278...19,480,387
Ensembl chrNW_004936486:19,477,453...19,480,297 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chrNW_004936530:227,266...249,285 JBrowse link
G Rpl26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,603,913...1,609,125
Ensembl chrNW_004936595:1,603,413...1,609,132 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107883) Ensembl
MGI		 PMID:16107883 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:8738145) MGI PMID:8738145 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10710310) Ensembl
MGI		 PMID:10710310 GO_REF:0000107 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10710310) Ensembl
MGI		 PMID:10710310 GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Foxm1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:3,185,289...3,198,427
Ensembl chrNW_004936606:3,185,982...3,198,378 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chrNW_004936530:227,266...249,285 JBrowse link
G Rps27l ribosomal protein S27 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:23,738,896...23,742,355
Ensembl chrNW_004936471:23,738,823...23,745,382 		JBrowse link
G Rps6ka6 ribosomal protein S6 kinase A6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936547:4,846,012...4,952,773
Ensembl chrNW_004936547:4,857,685...4,975,222 		JBrowse link
G Tfap4 transcription factor AP-4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:210,863...222,531
Ensembl chrNW_004936694:210,672...222,619 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10710310) Ensembl
MGI		 PMID:10710310 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
DNA damage response, signal transduction resulting in transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:10802669), (PMID:26240375) UniProt PMID:10802669 PMID:26240375 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Blm BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,432,752...12,479,807
Ensembl chrNW_004936495:12,432,731...12,479,876 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:21491884) UniProt PMID:21491884 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:1,728,848...1,803,992
Ensembl chrNW_004936687:1,729,417...1,803,992 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:17349954) HGNC-UCL PMID:17349954
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19506022) MGI
Ensembl		 PMID:19506022 GO_REF:0000107 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936550:2,482,915...2,554,077
Ensembl chrNW_004936550:2,485,769...2,539,548 		JBrowse link
G Rbbp8nl RBBP8 N-terminal like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:10,016,227...10,023,590
Ensembl chrNW_004936514:10,017,821...10,023,590 		JBrowse link
G Rnf138 ring finger protein 138 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936682:1,173,734...1,206,417
Ensembl chrNW_004936682:1,173,797...1,205,870 		JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit involved_in ISO (PMID:19595721) UniProt PMID:19595721 NCBI chrNW_004936501:12,332,135...12,335,081 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:720,585...744,477
Ensembl chrNW_004936694:722,481...744,600 		JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9823897) InterPro
MGI
Ensembl		 PMID:9823897 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590 		JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226 		JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Rad51 RAD51 recombinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936738:1,202,668...1,217,825
Ensembl chrNW_004936738:1,202,608...1,221,321 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Adprs ADP-ribosylserine hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:18,580,615...18,586,325
Ensembl chrNW_004936474:18,580,615...18,586,307 		JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936488:6,459,195...6,486,756 JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936769:904,129...908,130
Ensembl chrNW_004936769:904,125...906,881 		JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:4,743,595...4,777,685
Ensembl chrNW_004936562:4,741,371...4,777,727 		JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (MGI:5800654|PMID:27010503) UniProt PMID:27010503 MGI:5800654 NCBI chrNW_004936596:3,568,810...3,573,506
Ensembl chrNW_004936596:3,569,814...3,573,344 		JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA UniProt
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936751:1,807,867...1,817,780
Ensembl chrNW_004936751:1,807,867...1,819,272 		JBrowse link
G Aplf aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Aptx aprataxin involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936524:1,569,610...1,582,103
Ensembl chrNW_004936524:1,570,627...1,576,329 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11897662) MGI
Ensembl		 PMID:11897662 GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079
Ensembl chrNW_004936658:1,699,044...1,715,582 		JBrowse link
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15542845)
(PMID:11679583)
(PMID:15364958)		 Ensembl
MGI
InterPro		 PMID:11679583 PMID:15364958 PMID:15542845 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15364958) UniProt
MGI		 PMID:15364958 GO_REF:0000043 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Atrip ATR interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:245,134...264,456
Ensembl chrNW_004936529:245,092...264,351 		JBrowse link
G Atrx ATRX chromatin remodeler involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Bach1 BTB domain and CNC homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:12,720,027...12,740,717
Ensembl chrNW_004936500:12,717,516...12,740,656 		JBrowse link
G Bccip BRCA2 and CDKN1A interacting protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936486:13,816,805...13,831,055 JBrowse link
G Blm BLM RecQ like helicase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15364958) InterPro
MGI
UniProt		 PMID:15364958 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Brip1 BRCA1 interacting helicase 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Cenpx centromere protein X involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936594:5,517,665...5,520,606
Ensembl chrNW_004936594:5,516,915...5,520,553 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936588:2,536,141...2,564,897
Ensembl chrNW_004936588:2,542,265...2,564,962 		JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1 like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004937024:164,309...216,967
Ensembl chrNW_004937024:164,327...216,851 		JBrowse link
G Chek1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15364958) Ensembl
MGI		 PMID:15364958 GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,680,893...10,695,859
Ensembl chrNW_004936514:10,680,859...10,695,865 		JBrowse link
G Dclre1a DNA cross-link repair 1A involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936486:4,199,527...4,221,984
Ensembl chrNW_004936486:4,199,410...4,221,761 		JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936613:1,467,797...1,501,107
Ensembl chrNW_004936613:1,470,365...1,501,138 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chrNW_004936562:1,960,406...1,974,809
Ensembl chrNW_004936562:1,960,406...1,974,867 		JBrowse link
G Dmap1 DNA methyltransferase 1 associated protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:25,486,447...25,495,909
Ensembl chrNW_004936474:25,486,462...25,495,992 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936636:3,153,454...3,189,774
Ensembl chrNW_004936636:3,153,569...3,189,774 		JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936588:1,288,447...1,332,489
Ensembl chrNW_004936588:1,288,392...1,330,297 		JBrowse link
G Eepd1 endonuclease/exonuclease/phosphatase family domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936478:11,671,375...11,787,767
Ensembl chrNW_004936478:11,671,191...11,787,770 		JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936492:10,232,140...10,233,557
Ensembl chrNW_004936492:10,232,335...10,233,438 		JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936490:11,307,739...11,316,203
Ensembl chrNW_004936490:11,308,393...11,314,785 		JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936694:2,217,352...2,220,556
Ensembl chrNW_004936694:2,217,811...2,220,432 		JBrowse link
G Endov endonuclease V involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:4,332,225...4,345,743
Ensembl chrNW_004936594:4,332,208...4,343,068 		JBrowse link
G Ep400 E1A binding protein p400 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,212,063...2,297,730
Ensembl chrNW_004936660:2,212,243...2,295,862 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25538220)
(PMID:12466203)		 MGI
Ensembl
InterPro
UniProt		 PMID:12466203 PMID:25538220 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11950998) Ensembl
MGI		 PMID:11950998 GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14729965) InterPro
MGI
UniProt
Ensembl		 PMID:14729965 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15082767) UniProt
MGI		 PMID:15082767 GO_REF:0000043 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10806208)
(PMID:12447686), (PMID:17213818)		 Ensembl
MGI		 PMID:10806208 PMID:12447686 PMID:17213818 GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Exosc10 exosome component 10 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:130,735...153,608
Ensembl chrNW_004936474:130,329...153,962 		JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936483:916,377...949,833
Ensembl chrNW_004936483:912,346...949,833 		JBrowse link
G Fancc FA complementation group C involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936626:3,980,311...4,147,042
Ensembl chrNW_004936626:3,982,647...4,159,976 		JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Fanci FA complementation group I involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936483:15,096,215...15,179,856
Ensembl chrNW_004936483:15,106,902...15,179,094 		JBrowse link
G Fancl FA complementation group L involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:4,057,312...4,119,966
Ensembl chrNW_004936491:4,029,388...4,119,976 		JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12861020) UniProt
MGI		 PMID:12861020 GO_REF:0000043 NCBI chrNW_004936581:1,328,685...1,332,713
Ensembl chrNW_004936581:1,328,685...1,332,728 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936493:13,157,114...13,182,797
Ensembl chrNW_004936493:13,157,119...13,177,525 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936528:903,429...940,308
Ensembl chrNW_004936528:903,322...940,313 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936558:1,176,154...1,196,028
Ensembl chrNW_004936558:1,173,064...1,196,063 		JBrowse link
G Gtf2h4 general transcription factor IIH subunit 4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936837:546,561...552,686
Ensembl chrNW_004936837:546,509...552,754 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938 		JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within ISO (PMID:21746928) MGI PMID:21746928 NCBI chrNW_004936546:4,398,003...5,247,649
Ensembl chrNW_004936546:4,781,304...5,246,939 		JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936588:2,590,557...2,615,241
Ensembl chrNW_004936588:2,590,329...2,618,604 		JBrowse link
G Hinfp histone H4 transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:4,072,771...4,083,973
Ensembl chrNW_004936542:4,072,624...4,084,064 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936690:2,293,740...2,353,450
Ensembl chrNW_004936690:2,265,849...2,274,199
Ensembl chrNW_004936690:2,265,849...2,274,199 		JBrowse link
G Hltf helicase like transcription factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936519:6,531,549...6,579,724
Ensembl chrNW_004936519:6,531,571...6,582,081 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936751:478,978...622,818
Ensembl chrNW_004936751:478,300...622,820 		JBrowse link
G Inip INTS3 and NABP interacting protein involved_in IEA InterPro
TreeGrafter
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936559:813,912...830,768
Ensembl chrNW_004936559:813,940...830,763 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ints3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,511,364...3,553,441
Ensembl chrNW_004936580:3,511,311...3,553,756 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Kif22 kinesin family member 22 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936501:12,670,717...12,683,999
Ensembl chrNW_004936501:12,670,172...12,684,571 		JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,928,172...1,983,983
Ensembl chrNW_004936599:1,928,145...1,984,008 		JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:596,949...602,959
Ensembl chrNW_004936886:595,782...604,286 		JBrowse link
G Lig1 DNA ligase 1 acts_upstream_of_or_within
NOT|acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21390131)
(PMID:11896201)		 RGD
MGI
UniProt
InterPro		 PMID:1730240 PMID:11896201 PMID:21390131 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 RGD:724410 NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11779495)
(PMID:21390131)		 UniProt
MGI
InterPro
Ensembl		 PMID:11779495 PMID:21390131 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G LOC101956126 heat shock 70 kDa protein 1 acts_upstream_of_or_within ISO (PMID:14701760) MGI PMID:14701760 NCBI chrNW_004936727:1,732,323...1,735,128 JBrowse link
G LOC101957203 general transcription factor IIH subunit 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936480:72,730...92,868 JBrowse link
G LOC101959362 peroxisomal membrane protein PEX14 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936623:4,313,186...4,462,462
Ensembl chrNW_004936623:4,313,147...4,462,528
Ensembl chrNW_004936623:4,313,147...4,462,528 		JBrowse link
G LOC101966186 high mobility group protein B1-like involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936707:842,135...843,241 JBrowse link
G LOC101966907 histone H2AX involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15364958)
(PMID:11934988)		 Ensembl
MGI		 PMID:11934988 PMID:15364958 GO_REF:0000107 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346 		JBrowse link
G LOC101970824 histone PARylation factor 1 involved_in ISO (PMID:32028527), (PMID:34108479) UniProt PMID:32028527 PMID:34108479 NCBI chrNW_004936516:1,763,935...1,785,538 JBrowse link
G LOC101971629 core histone macro-H2A.1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936597:2,496,489...2,556,352
Ensembl chrNW_004936597:2,495,862...2,556,603 		JBrowse link
G LOC101973038 DNA polymerase kappa-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936895:106,612...107,763 JBrowse link
G LOC101974971 replication factor C subunit 4-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:11,741,006...11,742,186 JBrowse link
G LOC101976825 high mobility group protein B1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936516:6,259,790...6,261,016 JBrowse link
G Mbd4 methyl-CpG binding domain 4, DNA glycosylase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936602:968,159...980,452
Ensembl chrNW_004936602:956,784...967,884 		JBrowse link
G Mgme1 mitochondrial genome maintenance exonuclease 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936485:2,154,446...2,167,633
Ensembl chrNW_004936485:2,153,295...2,166,908 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:13679151) InterPro
MGI
TreeGrafter
UniProt
Ensembl		 PMID:13679151 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15480418)
(PMID:13679151)		 Ensembl
MGI
UniProt		 PMID:13679151 PMID:15480418 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936636:2,191,748...2,221,027
Ensembl chrNW_004936636:2,191,774...2,220,650 		JBrowse link
G Mms22l MMS22 like, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936699:486,510...608,532
Ensembl chrNW_004936699:486,491...608,562 		JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936495:4,909,427...5,128,113
Ensembl chrNW_004936495:4,909,380...5,128,113 		JBrowse link
G Mpg N-methylpurine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936501:783,408...791,109
Ensembl chrNW_004936501:783,475...791,146 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12687013) UniProt
MGI
Ensembl		 PMID:12687013 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh3 mutS homolog 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561 		JBrowse link
G Msh4 mutS homolog 4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936571:2,827,283...2,898,562
Ensembl chrNW_004936571:2,822,058...2,898,562 		JBrowse link
G Msh6 mutS homolog 6 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936599:3,670,759...3,677,375
Ensembl chrNW_004936599:3,670,862...3,677,239 		JBrowse link
G Mutyh mutY DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936474:26,484,316...26,492,652
Ensembl chrNW_004936474:26,481,211...26,493,019 		JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISO (PMID:19683501) UniProt PMID:19683501 NCBI chrNW_004936506:6,608,333...6,616,076 JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
G Nbn nibrin involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Neil1 nei like DNA glycosylase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12200441) UniProt
MGI
Ensembl		 PMID:12200441 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936471:34,184,273...34,192,675
Ensembl chrNW_004936471:34,186,729...34,192,501 		JBrowse link
G Neil3 nei like DNA glycosylase 3 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936516:7,739,191...7,781,735
Ensembl chrNW_004936516:7,739,157...7,782,024 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590 		JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,222,055...2,222,977
Ensembl chrNW_004936694:2,221,915...2,222,814 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:19188445) UniProt PMID:19188445 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936501:10,957,283...10,979,930
Ensembl chrNW_004936501:10,957,418...10,986,535 		JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:1,433,119...1,434,506
Ensembl chrNW_004936483:1,433,522...1,434,409 		JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936486:10,873,690...10,889,064
Ensembl chrNW_004936486:10,873,146...10,887,346 		JBrowse link
G Nthl1 nth like DNA glycosylase 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chrNW_004936694:1,993,443...2,000,323
Ensembl chrNW_004936694:1,993,443...2,000,333 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12447686), (PMID:17213818)
(PMID:11532868), (PMID:12447686), (PMID:17213818)
(PMID:12874039)		 Ensembl
MGI
UniProt		 PMID:11532868 PMID:12447686 PMID:12874039 PMID:17213818 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Park7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:2,422,780...2,436,817
Ensembl chrNW_004936623:2,422,833...2,436,817 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Pclaf PCNA clamp associated factor involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936471:24,797,291...24,812,196
Ensembl chrNW_004936471:24,797,393...24,808,227 		JBrowse link
G Pds5a PDS5 cohesin associated factor A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936482:7,337,475...7,466,715
Ensembl chrNW_004936482:7,340,236...7,467,484 		JBrowse link
G Pds5b PDS5 cohesin associated factor B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:27,258,084...27,377,278
Ensembl chrNW_004936472:27,258,090...27,378,084 		JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936471:25,165,850...25,173,503
Ensembl chrNW_004936471:25,166,325...25,173,535 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component acts_upstream_of_or_within ISO (PMID:15480418) MGI PMID:15480418 NCBI chrNW_004936750:439,396...468,747 JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:3335506)
(PMID:11470886)		 UniProt PMID:3335506 PMID:11470886 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Polb DNA polymerase beta involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polh DNA polymerase eta involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936476:16,400,026...16,434,538
Ensembl chrNW_004936476:16,401,517...16,429,287 		JBrowse link
G Poli DNA polymerase iota involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936497:9,490,048...9,512,475
Ensembl chrNW_004936497:9,487,917...9,512,436 		JBrowse link
G Polk DNA polymerase kappa involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12555660) InterPro
MGI		 PMID:12555660 GO_REF:0000002 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
G Poll DNA polymerase lambda involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936600:4,184,979...4,194,596
Ensembl chrNW_004936600:4,185,046...4,194,618 		JBrowse link
G Polm DNA polymerase mu involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936478:19,032,995...19,042,400
Ensembl chrNW_004936478:19,032,920...19,042,432 		JBrowse link
G Poln DNA polymerase nu involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Polq DNA polymerase theta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15542845)
(PMID:12663541), (PMID:15542845)		 Ensembl
MGI
UniProt		 PMID:12663541 PMID:15542845 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Psme4 proteasome activator subunit 4 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936491:404,921...503,783
Ensembl chrNW_004936491:404,912...504,326 		JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:692,436...709,899
Ensembl chrNW_004936588:692,436...709,945 		JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936518:6,620,325...6,626,328
Ensembl chrNW_004936518:6,620,325...6,628,393 		JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936480:216,216...252,178
Ensembl chrNW_004936480:216,208...252,070 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936602:4,030,353...4,134,119
Ensembl chrNW_004936602:4,030,459...4,081,931 		JBrowse link
G Rad21 RAD21 cohesin complex component involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936470:29,377,793...29,403,422
Ensembl chrNW_004936470:29,377,734...29,407,312 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936559:5,224,679...5,264,853
Ensembl chrNW_004936559:5,226,223...5,264,491 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rad51 RAD51 recombinase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51c RAD51 paralog C involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936490:4,440,638...4,473,301
Ensembl chrNW_004936490:4,439,097...4,473,357 		JBrowse link
G Rad51d RAD51 paralog D involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936538:119,409...132,830
Ensembl chrNW_004936538:119,326...134,758 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936558:3,462,187...3,489,741
Ensembl chrNW_004936558:3,459,223...3,489,413 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936550:2,482,915...2,554,077
Ensembl chrNW_004936550:2,485,769...2,539,548 		JBrowse link
G Rdm1 RAD52 motif containing 1 involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936541:1,788,266...1,797,410
Ensembl chrNW_004936541:1,788,197...1,797,423 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:829,296...862,615
Ensembl chrNW_004936594:828,475...862,912 		JBrowse link
G Rev1 REV1 DNA directed polymerase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936661:1,322,907...1,397,990
Ensembl chrNW_004936661:1,333,577...1,398,227 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11884603) Ensembl
MGI
UniProt		 PMID:11884603 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936679:65,852...183,820
Ensembl chrNW_004936679:65,769...222,984 		JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:3,479,778...3,504,938
Ensembl chrNW_004936669:3,481,294...3,491,572 		JBrowse link
G Rfc1 replication factor C subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936482:6,938,138...7,009,144
Ensembl chrNW_004936482:6,938,681...6,993,705 		JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:3,263,661...3,273,178
Ensembl chrNW_004936543:3,263,878...3,279,667 		JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936472:28,274,997...28,295,349
Ensembl chrNW_004936472:28,278,069...28,299,226 		JBrowse link
G Rfc4 replication factor C subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936578:3,204,035...3,219,806 JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:4,736,332...4,747,323
Ensembl chrNW_004936558:4,735,678...4,747,538 		JBrowse link
G Rnf138 ring finger protein 138 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936682:1,173,734...1,206,417
Ensembl chrNW_004936682:1,173,797...1,205,870 		JBrowse link
G Rpa1 replication protein A1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:815,401...848,749
Ensembl chrNW_004936498:815,399...848,793 		JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12858174) Ensembl
MGI		 PMID:12858174 GO_REF:0000107 NCBI chrNW_004936470:41,354,387...41,401,308
Ensembl chrNW_004936470:41,354,287...41,401,317 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
G Sfr1 SWI5 dependent homologous recombination repair protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936600:2,034,023...2,049,131
Ensembl chrNW_004936600:2,041,170...2,049,357 		JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936501:12,332,135...12,335,081 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936694:720,585...744,477
Ensembl chrNW_004936694:722,481...744,600 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:4,857,816...4,890,266
Ensembl chrNW_004936535:4,856,672...4,890,225 		JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936687:1,728,848...1,803,992
Ensembl chrNW_004936687:1,729,417...1,803,992 		JBrowse link
G Smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO RGD PMID:12718542 RGD:2317001 NCBI chrNW_004936512:11,395,513...11,416,426
Ensembl chrNW_004936512:11,395,834...11,402,377 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936581:5,148,108...5,157,630
Ensembl chrNW_004936581:5,148,050...5,157,667 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chrNW_004936880:511,699...545,364
Ensembl chrNW_004936880:508,244...545,369 		JBrowse link
G Swi5 SWI5 homologous recombination repair protein involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936487:15,814,463...15,822,783
Ensembl chrNW_004936487:15,814,102...15,823,311 		JBrowse link
G Tdg thymine DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936492:10,476,472...10,506,144
Ensembl chrNW_004936492:10,475,183...10,497,151 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21390131) Ensembl
MGI
TreeGrafter
InterPro
UniProt		 PMID:21390131 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:17,237,002...17,311,325
Ensembl chrNW_004936488:17,236,703...17,311,310 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15364958) Ensembl
MGI		 PMID:15364958 GO_REF:0000107 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Trim28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:126,832...132,938
Ensembl chrNW_004937062:126,708...134,366 		JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936525:6,539,234...6,690,457
Ensembl chrNW_004936525:6,539,191...6,690,457 		JBrowse link
G Trrap transformation/transcription domain associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936750:1,245,926...1,360,226
Ensembl chrNW_004936750:1,248,320...1,359,473 		JBrowse link
G Ttf2 transcription termination factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936627:2,177,814...2,216,536
Ensembl chrNW_004936627:2,177,871...2,213,901 		JBrowse link
G Ube2a ubiquitin conjugating enzyme E2 A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936479:10,330,666...10,340,268
Ensembl chrNW_004936479:10,330,632...10,340,367 		JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936647:891,357...913,963
Ensembl chrNW_004936647:891,996...911,033 		JBrowse link
G Ube2t ubiquitin conjugating enzyme E2 T involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:2,222,317...2,226,725
Ensembl chrNW_004936567:2,222,317...2,226,678 		JBrowse link
G Ube2u ubiquitin conjugating enzyme E2 U involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936692:1,714,533...1,765,348
Ensembl chrNW_004936692:1,714,511...1,792,910 		JBrowse link
G Ung uracil DNA glycosylase involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936769:911,296...922,770
Ensembl chrNW_004936769:910,838...922,726 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,469,444...2,505,688
Ensembl chrNW_004936596:2,468,116...2,505,688 		JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936641:3,308,121...3,350,476
Ensembl chrNW_004936641:3,307,931...3,350,517 		JBrowse link
G Usp3 ubiquitin specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:24,032,644...24,130,543
Ensembl chrNW_004936471:24,035,655...24,130,997 		JBrowse link
G Usp45 ubiquitin specific peptidase 45 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25538220) MGI
Ensembl		 PMID:25538220 GO_REF:0000107 NCBI chrNW_004936651:1,031,328...1,119,344
Ensembl chrNW_004936651:1,037,804...1,119,399 		JBrowse link
G Uvrag UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,555,325...4,869,099
Ensembl chrNW_004936498:4,555,276...4,870,896 		JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936697:129,821...184,238
Ensembl chrNW_004936697:130,105...183,576 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chrNW_004936633:3,853,201...3,873,983
Ensembl chrNW_004936633:3,853,058...3,874,121 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11950998), (PMID:9661901) Ensembl
MGI
UniProt		 PMID:9661901 PMID:11950998 GO_REF:0000043 GO_REF:0000107 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12555660) UniProt
MGI
Ensembl		 PMID:12555660 GO_REF:0000043 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19633665) Ensembl
MGI		 PMID:19633665 GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:7,760,609...7,785,360
Ensembl chrNW_004936527:7,760,719...7,785,391 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936621:1,462,441...1,474,937
Ensembl chrNW_004936621:1,462,428...1,473,868 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936586:1,055,478...1,137,924
Ensembl chrNW_004936586:1,055,335...1,137,984 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in IEA UniProt GO_REF:0000043 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) UniProt PMID:24657165 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15980864), (PMID:21746928)
(PMID:21746928)		 Ensembl
MGI		 PMID:15980864 PMID:21746928 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
G Znf668 zinc finger protein 668 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,423,491...13,442,329
Ensembl chrNW_004936501:13,422,989...13,426,060 		JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:40,328,850...40,558,797
Ensembl chrNW_004936469:40,328,787...40,609,533 		JBrowse link
DNA repair-dependent chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in ISO PMID:19282473 UniProt PMID:19282473 RGD:8553580 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Aplf aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Asf1a anti-silencing function 1A histone chaperone involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936658:1,699,150...1,713,079
Ensembl chrNW_004936658:1,699,044...1,715,582 		JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:3,574,507...3,582,370
Ensembl chrNW_004936596:3,574,476...3,582,421 		JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,844,778...8,853,442
Ensembl chrNW_004936536:8,844,575...8,851,146 		JBrowse link
G Hdac3 histone deacetylase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,530,546...12,546,556
Ensembl chrNW_004936504:12,530,528...12,546,556 		JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,590,557...2,615,241
Ensembl chrNW_004936588:2,590,329...2,618,604 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Kdm1a lysine demethylase 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24217620) Ensembl
MGI		 PMID:24217620 GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089
Ensembl chrNW_004936474:8,262,885...8,319,092 		JBrowse link
G LOC101970824 histone PARylation factor 1 involved_in ISO (PMID:32939087) UniProt PMID:32939087 NCBI chrNW_004936516:1,763,935...1,785,538 JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Phf1 PHD finger protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:25,481,938...25,487,026
Ensembl chrNW_004936476:25,479,953...25,487,403 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:23760478)
(PMID:19203578), (PMID:19500350), (PMID:22980979)		 UniProt PMID:19203578 PMID:19500350 PMID:22980979 PMID:23760478 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:18001824), (PMID:18001825), (PMID:22980979) UniProt PMID:18001824 PMID:18001825 PMID:22980979 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in ISO (PMID:22884692) UniProt PMID:22884692 NCBI chrNW_004936525:6,539,234...6,690,457
Ensembl chrNW_004936525:6,539,191...6,690,457 		JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,222,782...41,345,755
Ensembl chrNW_004936470:41,252,951...41,344,134 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISO (PMID:19202061) UniProt PMID:19202061 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
G Usp3 ubiquitin specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:24,032,644...24,130,543
Ensembl chrNW_004936471:24,035,655...24,130,997 		JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:1,115,524...1,119,083
Ensembl chrNW_004936819:1,116,447...1,118,558 		JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12429860) Ensembl
MGI
TreeGrafter		 PMID:12429860 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polg DNA polymerase gamma, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,178,947...15,196,277
Ensembl chrNW_004936483:15,179,342...15,195,258 		JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004936659:840,602...843,078 JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:619,120...633,590
Ensembl chrNW_004936541:620,754...633,499 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) UniProt PMID:11470886 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936599:2,383,919...2,385,705
Ensembl chrNW_004936599:2,383,792...2,386,537 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polh DNA polymerase eta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,400,026...16,434,538
Ensembl chrNW_004936476:16,401,517...16,429,287 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936633:3,853,201...3,873,983
Ensembl chrNW_004936633:3,853,058...3,874,121 		JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1730053) UniProt PMID:1730053 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23993650) Ensembl
MGI		 PMID:23993650 GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,202,668...1,217,825
Ensembl chrNW_004936738:1,202,608...1,221,321 		JBrowse link
G Actr5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in ISO (MGI:3698695|PMID:17121854) UniProt PMID:17121854 MGI:3698695 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Aplf aprataxin and PNKP like factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21211721) Ensembl
MGI
TreeGrafter
InterPro		 PMID:21211721 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936596:3,574,507...3,582,370
Ensembl chrNW_004936596:3,574,476...3,582,421 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:17643121), (PMID:19261748)
(MGI:5545964|PMID:22186889)
(PMID:22186889)		 UniProt
CACAO		 PMID:17525340 PMID:17643121 PMID:19261748 PMID:22186889 MGI:5545964 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated involved_in
acts_upstream_of_or_within		 ISO (PMID:16845393)
(PMID:17476307)
(PMID:9398843)		 UniProt
MGI		 PMID:9398843 PMID:16845393 PMID:17476307 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Cdca5 cell division cycle associated 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:4,285,007...4,291,875
Ensembl chrNW_004936599:4,284,958...4,291,874 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:22325354) UniProt PMID:22325354 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:10,030,408...10,073,576
Ensembl chrNW_004936475:10,033,717...10,075,511 		JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12615897) Ensembl
MGI		 PMID:12615897 GO_REF:0000107 NCBI chrNW_004936613:1,467,797...1,501,107
Ensembl chrNW_004936613:1,470,365...1,501,138 		JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:14,884,532...14,918,621
Ensembl chrNW_004936493:14,884,442...14,918,823 		JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,844,778...8,853,442
Ensembl chrNW_004936536:8,844,575...8,851,146 		JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:11,307,739...11,316,203
Ensembl chrNW_004936490:11,308,393...11,314,785 		JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936694:2,217,352...2,220,556
Ensembl chrNW_004936694:2,217,811...2,220,432 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within
NOT|acts_upstream_of_or_within		 IEA
ISO		 (PMID:15199134)
(PMID:17912366)
(PMID:11707424)		 Ensembl
MGI
UniProt		 PMID:11707424 PMID:15199134 PMID:17912366 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22614755) Ensembl
MGI		 PMID:22614755 GO_REF:0000107 NCBI chrNW_004936675:670,915...697,696
Ensembl chrNW_004936675:670,915...697,668 		JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,432,752...12,479,807
Ensembl chrNW_004936495:12,432,731...12,479,876 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,191,391...12,295,380
Ensembl chrNW_004936474:12,191,389...12,295,458 		JBrowse link
G Ggn gametogenetin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23451117) InterPro
MGI		 PMID:23451117 GO_REF:0000002 NCBI chrNW_004936801:1,144,400...1,148,228
Ensembl chrNW_004936801:1,142,092...1,148,738 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12531011)
(PMID:12531011), (PMID:15175260)
(PMID:15175260)
(PMID:17554302)		 Ensembl
MGI		 PMID:12531011 PMID:15175260 PMID:17554302 GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G LOC101970824 histone PARylation factor 1 involved_in ISO (PMID:32028527) UniProt PMID:32028527 NCBI chrNW_004936516:1,763,935...1,785,538 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Marf1 meiosis regulator and mRNA stability factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23090997) Ensembl
MGI		 PMID:23090997 GO_REF:0000107 NCBI chrNW_004936501:3,151,030...3,189,656
Ensembl chrNW_004936501:3,150,994...3,189,656 		JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,064,702...1,066,742
Ensembl chrNW_004936541:1,053,184...1,071,350 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17291760) InterPro
MGI
Ensembl
UniProt		 PMID:17291760 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17912366) Ensembl
MGI		 PMID:17912366 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Mta1 metastasis associated 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936621:117,785...140,917
Ensembl chrNW_004936621:117,785...140,926 		JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936599:3,670,759...3,677,375
Ensembl chrNW_004936599:3,670,862...3,677,239 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21270334) Ensembl
MGI
TreeGrafter		 PMID:21270334 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Parp2 poly(ADP-ribose) polymerase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936877:554,969...564,905
Ensembl chrNW_004936877:554,473...564,903 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21211721)
(PMID:21270334)		 MGI
TreeGrafter
Ensembl		 PMID:21211721 PMID:21270334 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,806,824...8,845,099
Ensembl chrNW_004936536:8,806,818...8,840,746 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11751629)
(PMID:12604618)		 Ensembl
MGI
TreeGrafter
UniProt		 PMID:11751629 PMID:12604618 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21743440) Ensembl
MGI		 PMID:21743440 GO_REF:0000107 NCBI chrNW_004936485:17,413,006...17,435,951
Ensembl chrNW_004936485:17,413,006...17,435,951 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
G Rad54l RAD54 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15175260) Ensembl
MGI		 PMID:15175260 GO_REF:0000107 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:19203578), (PMID:19203579), (PMID:22980979) UniProt PMID:19203578 PMID:19203579 PMID:22980979 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf169 ring finger protein 169 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936498:3,675,075...3,783,514
Ensembl chrNW_004936498:3,685,572...3,776,466 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:18001824), (PMID:18001825), (PMID:22980979) UniProt PMID:18001824 PMID:18001825 PMID:22980979 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Setx senataxin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:18,858,384...18,945,253
Ensembl chrNW_004936487:18,855,744...18,944,158 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936493:13,191,389...13,250,788
Ensembl chrNW_004936493:13,191,455...13,252,578 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:17,237,002...17,311,325
Ensembl chrNW_004936488:17,236,703...17,311,310 		JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 involved_in ISO (PMID:21030584)
(PMID:19794497)		 UniProt PMID:19794497 PMID:21030584 NCBI chrNW_004948563:494...1,113 JBrowse link
G Tnks1bp1 tankyrase 1 binding protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:5,158,424...5,182,099
Ensembl chrNW_004936581:5,158,353...5,182,109 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17912366) Ensembl
MGI		 PMID:17912366 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17696610) Ensembl
MGI		 PMID:17696610 GO_REF:0000107 NCBI chrNW_004936815:734,029...745,381
Ensembl chrNW_004936815:734,167...745,092 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProt PMID:17525340 PMID:17525341 PMID:17525342 PMID:17643121 PMID:19261748 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11751629), (PMID:9875844) Ensembl
MGI
InterPro		 PMID:9875844 PMID:11751629 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12531011) Ensembl
MGI
UniProt		 PMID:12531011 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936586:1,055,478...1,137,924
Ensembl chrNW_004936586:1,055,335...1,137,984 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 acts_upstream_of_or_within ISO (PMID:11751629) MGI PMID:11751629 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26490168) Ensembl
MGI
TreeGrafter		 PMID:26490168 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G Brme1 break repair meiotic recombinase recruitment factor 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936659:2,595,052...2,611,490
Ensembl chrNW_004936659:2,594,977...2,611,558 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Hsf2bp heat shock transcription factor 2 binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:600,628...676,201
Ensembl chrNW_004936500:600,656...675,997 		JBrowse link
G Majin membrane anchored junction protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30718482) Ensembl
MGI		 PMID:30718482 GO_REF:0000107 NCBI chrNW_004936599:4,382,751...4,400,400
Ensembl chrNW_004936599:4,382,761...4,399,572 		JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004936496:7,149,501...7,182,771 JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:15834424) UniProt PMID:15834424 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Spo11 SPO11 initiator of meiotic double strand breaks involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27760146) Ensembl
MGI		 PMID:27760146 GO_REF:0000107 NCBI chrNW_004936530:183,271...197,549
Ensembl chrNW_004936530:183,271...197,335 		JBrowse link
G Terb1 telomere repeat binding bouquet formation protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30718482) Ensembl
MGI		 PMID:30718482 GO_REF:0000107 NCBI chrNW_004936475:17,038,956...17,077,887
Ensembl chrNW_004936475:17,038,956...17,072,162 		JBrowse link
G Terb2 telomere repeat binding bouquet formation protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30718482) Ensembl
MGI		 PMID:30718482 GO_REF:0000107 NCBI chrNW_004936471:7,713,562...7,728,720
Ensembl chrNW_004936471:7,713,543...7,727,806 		JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011 		JBrowse link
G Lig3 DNA ligase 3 involved_in ISO (PMID:24837021)
(MGI:5014103|PMID:21655080)		 BHF-UCL PMID:21655080 PMID:24837021 MGI:5014103 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Poln DNA polymerase nu involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:3,201,540...3,208,019
Ensembl chrNW_004936606:3,201,504...3,208,342 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936619:3,420,110...3,452,419
Ensembl chrNW_004936619:3,420,191...3,452,436 		JBrowse link
G Gins2 GINS complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Gins4 GINS complex subunit 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936785:1,043,342...1,059,635
Ensembl chrNW_004936785:1,043,143...1,059,636 		JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936798:756,350...768,600
Ensembl chrNW_004936798:756,588...765,338 		JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:8,530,614...8,547,971
Ensembl chrNW_004936476:8,530,688...8,547,978 		JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:4,705,028...4,722,320
Ensembl chrNW_004936590:4,704,972...4,722,427 		JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936492:5,016,948...5,038,494
Ensembl chrNW_004936492:5,016,323...5,038,526 		JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936469:40,014,892...40,059,571
Ensembl chrNW_004936469:40,014,863...40,059,580 		JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:238,573...246,746
Ensembl chrNW_004936543:233,960...246,746 		JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936496:7,149,501...7,182,771 JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936599:3,670,759...3,677,375
Ensembl chrNW_004936599:3,670,862...3,677,239 		JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Lig4 DNA ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:27153538) UniProt PMID:27153538 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Uvrag UV radiation resistance associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,555,325...4,869,099
Ensembl chrNW_004936498:4,555,276...4,870,896 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,310,975...2,321,790
Ensembl chrNW_004936588:2,311,727...2,321,372 		JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankle1 ankyrin repeat and LEM domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936596:3,568,810...3,573,506
Ensembl chrNW_004936596:3,569,814...3,573,344 		JBrowse link
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936485:14,880,338...14,884,383
Ensembl chrNW_004936485:14,877,206...14,884,369 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:1,112,333...1,123,244
Ensembl chrNW_004936765:1,111,882...1,123,316 		JBrowse link
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19061978) Ensembl
MGI		 PMID:19061978 GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Aunip aurora kinase A and ninein interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:10,409,463...10,430,158
Ensembl chrNW_004936474:10,409,022...10,430,187 		JBrowse link
G Blm BLM RecQ like helicase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated involved_in
acts_upstream_of_or_within		 ISO (PMID:21719596)
(PMID:15485900)
(PMID:20729832), (PMID:28398198)		 UniProt
MGI
ComplexPortal		 PMID:15485900 PMID:20729832 PMID:21719596 PMID:28398198 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:1,183,243...1,214,144
Ensembl chrNW_004936709:1,183,254...1,214,149 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:2,754,694...2,788,249
Ensembl chrNW_004936492:2,753,289...2,788,102 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:966,655...1,050,537
Ensembl chrNW_004936574:964,619...1,050,571 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:26833090) UniProt PMID:26833090 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:12,432,752...12,479,807
Ensembl chrNW_004936495:12,432,731...12,479,876 		JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:916,377...949,833
Ensembl chrNW_004936483:912,346...949,833 		JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:13,157,114...13,182,797
Ensembl chrNW_004936493:13,157,119...13,177,525 		JBrowse link
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Htatsf1 HIV-1 Tat specific factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:10,762,417...10,779,641
Ensembl chrNW_004936513:10,762,398...10,779,374 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Inip INTS3 and NABP interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936559:813,912...830,768
Ensembl chrNW_004936559:813,940...830,763 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ints3 integrator complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,511,364...3,553,441
Ensembl chrNW_004936580:3,511,311...3,553,756 		JBrowse link
G Kash5 KASH domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24062341) Ensembl
MGI		 PMID:24062341 GO_REF:0000107 NCBI chrNW_004936664:3,268,824...3,300,689
Ensembl chrNW_004936664:3,275,669...3,297,605 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G LOC101966907 histone H2AX involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11934988) Ensembl
MGI		 PMID:11934988 GO_REF:0000107 NCBI chrNW_004936542:4,046,930...4,049,017
Ensembl chrNW_004936542:4,047,915...4,048,346 		JBrowse link
G LOC101967900 lysine-specific demethylase 4D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
Ensembl		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936674:53,200...73,042 JBrowse link
G Mbtd1 mbt domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:10,567,146...10,633,130
Ensembl chrNW_004936490:10,587,010...10,630,049 		JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:13,072,791...13,108,392
Ensembl chrNW_004936485:13,072,600...13,108,411 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:23401855)
(MGI:5437561|PMID:22771120), (MGI:5525985|PMID:23401855)
(PMID:22771115)		 UniProt PMID:22771115 PMID:22771120 PMID:23401855 MGI:5437561 MGI:5525985 NCBI chrNW_004936658:1,657,226...1,734,150 JBrowse link
G Meiob meiosis specific with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,099,967...2,176,279
Ensembl chrNW_004936694:2,142,800...2,176,239 		JBrowse link
G Mms22l MMS22 like, DNA repair protein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936699:486,510...608,532
Ensembl chrNW_004936699:486,491...608,562 		JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO (PMID:20332121) UniProt PMID:20332121 NCBI chrNW_004936471:37,073,920...37,097,216
Ensembl chrNW_004936471:37,073,895...37,097,235 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936506:6,608,333...6,616,076 JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936646:632,390...638,900
Ensembl chrNW_004936646:632,121...639,868 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:10,957,283...10,979,930
Ensembl chrNW_004936501:10,957,418...10,986,535 		JBrowse link
G Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936470:22,447,278...22,667,302
Ensembl chrNW_004936470:22,445,433...22,667,559 		JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:6,713,065...6,728,011
Ensembl chrNW_004936557:6,713,095...6,722,808 		JBrowse link
G Palb2 partner and localizer of BRCA2 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936501:8,246,927...8,273,258 JBrowse link
G Pogz pogo transposable element derived with ZNF domain involved_in
acts_upstream_of_or_within_positive_effect		 IEA
ISO		 (PMID:26721387) Ensembl
UniProt		 PMID:26721387 GO_REF:0000107 NCBI chrNW_004936580:1,613,425...1,650,849
Ensembl chrNW_004936580:1,615,713...1,650,874 		JBrowse link
G Poll DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,184,979...4,194,596
Ensembl chrNW_004936600:4,185,046...4,194,618 		JBrowse link
G Poln DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:12,407,968...12,416,057
Ensembl chrNW_004936501:12,407,920...12,416,108 		JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:17,494,137...17,601,045
Ensembl chrNW_004936469:17,494,134...17,601,045 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22711701) Ensembl
MGI		 PMID:22711701 GO_REF:0000107 NCBI chrNW_004936485:17,413,006...17,435,951
Ensembl chrNW_004936485:17,413,006...17,435,951 		JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:2,546,100...2,637,524
Ensembl chrNW_004936647:2,543,599...2,637,846 		JBrowse link
G Rad51 RAD51 recombinase acts_upstream_of_or_within
involved_in		 ISO (PMID:15359272)
(PMID:15485900)
(PMID:15834424)
(PMID:17996710), (PMID:17996711), (PMID:18417535), (PMID:26811421), (PMID:27239033), (PMID:32640219)
(PMID:16428451)
(PMID:22778135), (PMID:23509288), (PMID:26681308)		 RGD
MGI
UniProt		 PMID:14755242 PMID:15359272 PMID:15485900 PMID:15834424 PMID:16428451 More... RGD:9831188 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rad51b RAD51 paralog B involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:11,185,560...11,762,254
Ensembl chrNW_004936495:11,195,767...11,467,458 		JBrowse link
G Rad51c RAD51 paralog C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:4,440,638...4,473,301
Ensembl chrNW_004936490:4,439,097...4,473,357 		JBrowse link
G Rad51d RAD51 paralog D involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:119,409...132,830
Ensembl chrNW_004936538:119,326...134,758 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12379650) InterPro
MGI
TreeGrafter
Ensembl		 PMID:12379650 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
G Rad54b RAD54 homolog B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16428451)
(PMID:19061978)		 MGI
Ensembl		 PMID:16428451 PMID:19061978 GO_REF:0000107 NCBI chrNW_004936544:7,375,566...7,475,319
Ensembl chrNW_004936544:7,373,508...7,475,353 		JBrowse link
G Rad54l RAD54 like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19061978)
(PMID:16428451)		 Ensembl
MGI		 PMID:16428451 PMID:19061978 GO_REF:0000107 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936550:2,482,915...2,554,077
Ensembl chrNW_004936550:2,485,769...2,539,548 		JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22711701) Ensembl
MGI		 PMID:22711701 GO_REF:0000107 NCBI chrNW_004936722:369,366...375,243
Ensembl chrNW_004936722:369,423...375,243 		JBrowse link
G Recql RecQ like helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936548:5,349,878...5,384,603
Ensembl chrNW_004936548:5,362,517...5,384,338 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:829,296...862,615
Ensembl chrNW_004936594:828,475...862,912 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936679:65,852...183,820
Ensembl chrNW_004936679:65,769...222,984 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936828:839,142...859,982
Ensembl chrNW_004936828:857,889...859,766 		JBrowse link
G Rmi2 RecQ mediated genome instability 2 involved_in ISO (PMID:23543748) ComplexPortal PMID:23543748 NCBI chrNW_004936530:9,367,122...9,369,316 JBrowse link
G Rnf138 ring finger protein 138 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936682:1,173,734...1,206,417
Ensembl chrNW_004936682:1,173,797...1,205,870 		JBrowse link
G Rnf169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:3,675,075...3,783,514
Ensembl chrNW_004936498:3,685,572...3,776,466 		JBrowse link
G Rpa1 replication protein A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15470499) Ensembl
MGI
TreeGrafter		 PMID:15470499 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:4,180,607...4,238,623
Ensembl chrNW_004936561:4,180,546...4,229,036 		JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15359272) Ensembl
MGI
TreeGrafter		 PMID:15359272 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:3,727,199...3,747,873
Ensembl chrNW_004936585:3,727,126...3,750,473 		JBrowse link
G Sfpq splicing factor proline and glutamine rich acts_upstream_of_or_within ISO (PMID:20813759) MGI PMID:20813759 NCBI chrNW_004936474:17,776,490...17,791,966 JBrowse link
G Sfr1 SWI5 dependent homologous recombination repair protein 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:2,034,023...2,049,131
Ensembl chrNW_004936600:2,041,170...2,049,357 		JBrowse link
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:12,332,135...12,335,081 JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:720,585...744,477
Ensembl chrNW_004936694:722,481...744,600 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936503:6,388,556...6,483,293
Ensembl chrNW_004936503:6,388,487...6,483,333 		JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:13,191,389...13,250,788
Ensembl chrNW_004936493:13,191,455...13,252,578 		JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Swi5 SWI5 homologous recombination repair protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:15,814,463...15,822,783
Ensembl chrNW_004936487:15,814,102...15,823,311 		JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936659:1,465,349...1,466,822
Ensembl chrNW_004936659:1,465,313...1,470,591 		JBrowse link
G Tonsl tonsoku like, DNA repair protein involved_in ISO (PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:30773278)
(PMID:27338793), (PMID:27797818)		 UniProt PMID:21055983 PMID:21055984 PMID:21055985 PMID:27338793 PMID:27797818 More... NCBI chrNW_004936470:7,817,444...7,829,124 JBrowse link
G Top3a DNA topoisomerase III alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:1,809,371...1,838,711
Ensembl chrNW_004936741:1,809,909...1,838,734 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:17349954) HGNC-UCL PMID:17349954
G Wdr48 WD repeat domain 48 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24001775) Ensembl
MGI
TreeGrafter		 PMID:24001775 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:28,307,913...28,351,727
Ensembl chrNW_004936473:28,307,875...28,354,279 		JBrowse link
G Wrn WRN RecQ like helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936792:862,659...1,005,065
Ensembl chrNW_004936792:862,383...1,005,755 		JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16777961) InterPro
MGI
TreeGrafter
Ensembl		 PMID:16777961 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936527:7,760,609...7,785,360
Ensembl chrNW_004936527:7,760,719...7,785,391 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:1,462,441...1,474,937
Ensembl chrNW_004936621:1,462,428...1,473,868 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119) UniProt PMID:18026119 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936495:11,132,025...11,191,446
Ensembl chrNW_004936495:11,134,138...11,190,863 		JBrowse link
G Zmynd8 zinc finger MYND-type containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:6,116,789...6,214,383
Ensembl chrNW_004936514:6,116,676...6,212,996 		JBrowse link
G Zswim7 zinc finger SWIM-type containing 7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936821:567,397...582,177
Ensembl chrNW_004936821:567,439...582,458 		JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Cyren cell cycle regulator of NHEJ involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936579:768,153...776,053
Ensembl chrNW_004936579:768,252...770,440 		JBrowse link
G Dclre1a DNA cross-link repair 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:4,199,527...4,221,984
Ensembl chrNW_004936486:4,199,410...4,221,761 		JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936613:1,467,797...1,501,107
Ensembl chrNW_004936613:1,470,365...1,501,138 		JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936636:3,153,454...3,189,774
Ensembl chrNW_004936636:3,153,569...3,189,774 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936690:2,293,740...2,353,450
Ensembl chrNW_004936690:2,265,849...2,274,199
Ensembl chrNW_004936690:2,265,849...2,274,199 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:9600082) GO_Central PMID:9600082 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:9600082) GO_Central PMID:9600082 NCBI chrNW_004936516:4,536,664...4,539,331
Ensembl chrNW_004936516:4,534,306...4,539,387 		JBrowse link
G Iffo1 intermediate filament family orphan 1 involved_in ISO (PMID:31548606) UniProt PMID:31548606 NCBI chrNW_004936709:1,228,589...1,242,349
Ensembl chrNW_004936709:1,228,606...1,242,349 		JBrowse link
G Kdm2a lysine demethylase 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,466,427...2,576,623
Ensembl chrNW_004936599:2,466,214...2,576,623 		JBrowse link
G Lig1 DNA ligase 1 acts_upstream_of_or_within ISO (PMID:21655080) MGI PMID:21655080 NCBI chrNW_004936664:2,242,916...2,276,286
Ensembl chrNW_004936664:2,242,897...2,276,715 		JBrowse link
G Lig3 DNA ligase 3 acts_upstream_of_or_within ISO (PMID:21655080) MGI PMID:21655080 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10823907)
(PMID:16777961)		 Ensembl
MGI
TreeGrafter		 PMID:10823907 PMID:16777961 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:16332963)
(PMID:18263876), (PMID:21187428), (PMID:24573677)		 UniProt PMID:16332963 PMID:18263876 PMID:21187428 PMID:24573677 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15084308) Ensembl
MGI		 PMID:15084308 GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Nhej1 non-homologous end joining factor 1 involved_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936569:1,494,783...1,578,587
Ensembl chrNW_004936569:1,495,446...1,578,590 		JBrowse link
G Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase NOT|involved_in ISO (PMID:16810316) UniProt PMID:16810316 NCBI chrNW_004936470:22,447,278...22,667,302
Ensembl chrNW_004936470:22,445,433...22,667,559 		JBrowse link
G Paxx PAXX non-homologous end joining factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936669:951,256...952,804
Ensembl chrNW_004936669:951,261...952,769 		JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) UniProt PMID:11470886 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Polb DNA polymerase beta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Poll DNA polymerase lambda involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,184,979...4,194,596
Ensembl chrNW_004936600:4,185,046...4,194,618 		JBrowse link
G Polm DNA polymerase mu involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:19,032,995...19,042,400
Ensembl chrNW_004936478:19,032,920...19,042,432 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23836881) Ensembl
MGI
InterPro		 PMID:23836881 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,031,894...2,042,294
Ensembl chrNW_004936581:2,031,822...2,042,424 		JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:17,494,137...17,601,045
Ensembl chrNW_004936469:17,494,134...17,601,045 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:27153538) UniProt PMID:27153538 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (MGI:5293246|PMID:21857671), (MGI:5465398|PMID:22266820) UniProt PMID:21857671 PMID:22266820 MGI:5293246 MGI:5465398 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Smarcal1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:828,661...887,988
Ensembl chrNW_004936586:828,650...888,047 		JBrowse link
G Smc5 structural maintenance of chromosomes 5 NOT|involved_in ISO (PMID:16810316) UniProt PMID:16810316 NCBI chrNW_004936503:6,388,556...6,483,293
Ensembl chrNW_004936503:6,388,487...6,483,333 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17713479) Ensembl
MGI
TreeGrafter
UniProt		 PMID:17713479 GO_REF:0000107 GO_REF:0000117 GO_REF:0000118 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226 		JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936586:1,055,478...1,137,924
Ensembl chrNW_004936586:1,055,335...1,137,984 		JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11751629) Ensembl
MGI
TreeGrafter
InterPro		 PMID:11751629 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:303,843...325,812
Ensembl chrNW_004936492:300,057...325,845 		JBrowse link
double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
double-strand break repair via single-strand annealing, removal of nonhomologous ends term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Rad54b RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:7,375,566...7,475,319
Ensembl chrNW_004936544:7,373,508...7,475,353 		JBrowse link
G Rad54l RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936621:1,462,441...1,474,937
Ensembl chrNW_004936621:1,462,428...1,473,868 		JBrowse link
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101977921 ubiquitin-conjugating enzyme E2 variant 1 acts_upstream_of_or_within ISO (PMID:11406273) MGI PMID:11406273 NCBI chrNW_004936514:4,382,428...4,405,151 JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11406273) Ensembl
MGI		 PMID:11406273 GO_REF:0000107 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:4,504,039...4,512,785
Ensembl chrNW_004936538:4,500,478...4,512,761 		JBrowse link
G Rev1 REV1 DNA directed polymerase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936661:1,322,907...1,397,990
Ensembl chrNW_004936661:1,333,577...1,398,227 		JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101973038 DNA polymerase kappa-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936895:106,612...107,763 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:19,074,871...19,083,624
Ensembl chrNW_004936478:19,072,810...19,083,669 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936583:340,428...386,633
Ensembl chrNW_004936583:341,456...386,395 		JBrowse link
G Polh DNA polymerase eta involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936476:16,400,026...16,434,538
Ensembl chrNW_004936476:16,401,517...16,429,287 		JBrowse link
G Polk DNA polymerase kappa involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
G Rev1 REV1 DNA directed polymerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11711549) InterPro
MGI
TreeGrafter
Ensembl		 PMID:11711549 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936661:1,322,907...1,397,990
Ensembl chrNW_004936661:1,333,577...1,398,227 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936679:65,852...183,820
Ensembl chrNW_004936679:65,769...222,984 		JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpx centromere protein X involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,517,665...5,520,606
Ensembl chrNW_004936594:5,516,915...5,520,553 		JBrowse link
G Dclre1a DNA cross-link repair 1A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936486:4,199,527...4,221,984
Ensembl chrNW_004936486:4,199,410...4,221,761 		JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936613:1,467,797...1,501,107
Ensembl chrNW_004936613:1,470,365...1,501,138 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23637614) Ensembl
MGI		 PMID:23637614 GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Exo5 exonuclease 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:22,244,459...22,249,472
Ensembl chrNW_004936474:22,244,459...22,249,435 		JBrowse link
G Faap100 FA core complex associated protein 100 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936594:5,194,502...5,203,318
Ensembl chrNW_004936594:5,193,355...5,203,324 		JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO (PMID:22266823), (PMID:22396592), (PMID:22705371) UniProt PMID:22266823 PMID:22396592 PMID:22705371 NCBI chrNW_004936737:1,296,152...1,300,038 JBrowse link
G Faap24 FA core complex associated protein 24 involved_in ISO (PMID:20347429) ComplexPortal PMID:20347429 NCBI chrNW_004936570:2,834,059...2,834,436 JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936483:916,377...949,833
Ensembl chrNW_004936483:912,346...949,833 		JBrowse link
G Fanca FA complementation group A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936641:281,119...319,796
Ensembl chrNW_004936641:281,073...324,053 		JBrowse link
G Fancb FA complementation group B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Fancc FA complementation group C involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936626:3,980,311...4,147,042
Ensembl chrNW_004936626:3,982,647...4,159,976 		JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Fance FA complementation group E involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936476:23,783,161...23,794,646
Ensembl chrNW_004936476:23,782,977...23,794,708 		JBrowse link
G Fancg FA complementation group G involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936524:3,103,912...3,110,246
Ensembl chrNW_004936524:3,104,176...3,109,779 		JBrowse link
G Fancl FA complementation group L involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936491:4,057,312...4,119,966
Ensembl chrNW_004936491:4,029,388...4,119,976 		JBrowse link
G Fancm FA complementation group M involved_in ISO (PMID:20347429) ComplexPortal PMID:20347429 NCBI chrNW_004936583:4,085,802...4,145,621 JBrowse link
G Firrm FIGNL1 interacting regulator of recombination and mitosis involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,828,810...16,863,108
Ensembl chrNW_004936481:16,828,944...16,860,447 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936690:2,293,740...2,353,450
Ensembl chrNW_004936690:2,265,849...2,274,199
Ensembl chrNW_004936690:2,265,849...2,274,199 		JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011 		JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:619,120...633,590
Ensembl chrNW_004936541:620,754...633,499 		JBrowse link
G LOC101959362 peroxisomal membrane protein PEX14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:4,313,186...4,462,462
Ensembl chrNW_004936623:4,313,147...4,462,528
Ensembl chrNW_004936623:4,313,147...4,462,528 		JBrowse link
G LOC101967543 DNA excision repair protein ERCC-6-like 2 involved_in ISO (PMID:24507776) UniProt PMID:24507776 NCBI chrNW_004936487:33,082...60,819 JBrowse link
G Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:6,713,065...6,728,011
Ensembl chrNW_004936557:6,713,095...6,722,808 		JBrowse link
G Poln DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:26253028) UniProt PMID:26253028 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:26323318) ParkinsonsUK-UCL PMID:26323318 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rad51d RAD51 paralog D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15781618) Ensembl
MGI		 PMID:15781618 GO_REF:0000107 NCBI chrNW_004936538:119,409...132,830
Ensembl chrNW_004936538:119,326...134,758 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in ISO (PMID:36608669) UniProt PMID:36608669 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936621:1,462,441...1,474,937
Ensembl chrNW_004936621:1,462,428...1,473,868 		JBrowse link
intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Atm ATM serine/threonine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11040211), (PMID:16777961)
(PMID:17476307)		 Ensembl
MGI		 PMID:11040211 PMID:16777961 PMID:17476307 GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Bad BCL2 associated agonist of cell death involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12431371)
(PMID:15231831)		 Ensembl
MGI		 PMID:12431371 PMID:15231831 GO_REF:0000107 NCBI chrNW_004936599:4,924,349...4,933,683
Ensembl chrNW_004936599:4,924,789...4,933,368 		JBrowse link
G Bak1 BCL2 antagonist/killer 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15901672)
(PMID:15967824)		 Ensembl
MGI
TreeGrafter		 PMID:15901672 PMID:15967824 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:25,347,608...25,354,772
Ensembl chrNW_004936476:25,347,545...25,355,789 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12952892)
(PMID:15967824)
(PMID:15901672)		 Ensembl
MGI
TreeGrafter		 PMID:12952892 PMID:15901672 PMID:15967824 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936664:2,968,103...2,973,652
Ensembl chrNW_004936664:2,967,865...2,973,820 		JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI
TreeGrafter		 PMID:15983387 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921 		JBrowse link
G Bcl2a1 BCL2 related protein A1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:37,981,851...37,993,097
Ensembl chrNW_004936471:37,981,772...37,993,116 		JBrowse link
G Bcl2l1 BCL2 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14517295) TreeGrafter
MGI		 PMID:14517295 GO_REF:0000118 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Bcl2l11 BCL2 like 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11546872)
(PMID:15967824)		 MGI
Ensembl		 PMID:11546872 PMID:15967824 GO_REF:0000107 NCBI chrNW_004936783:15,493...50,959
Ensembl chrNW_004936783:18,194...50,983 		JBrowse link
G Bok BCL2 family apoptosis regulator BOK involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936745:344,837...350,950
Ensembl chrNW_004936745:345,635...351,749 		JBrowse link
G Brca1 BRCA1 DNA repair associated acts_upstream_of_or_within ISO (PMID:14654789) MGI PMID:14654789 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:17476307) MGI PMID:17476307 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Casp9 caspase 9 involved_in ISO (PMID:15657060) UniProt PMID:15657060 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Crip1 cysteine rich protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936621:101,046...102,660
Ensembl chrNW_004936621:101,046...102,664 		JBrowse link
G E2f1 E2F transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,894,827...6,901,058
Ensembl chrNW_004936561:6,896,063...6,900,026 		JBrowse link
G Ei24 EI24 autophagy associated transmembrane protein acts_upstream_of_or_within ISO (PMID:10594026) MGI PMID:10594026 NCBI chrNW_004936743:1,957,948...1,970,885
Ensembl chrNW_004936743:1,958,829...1,969,540 		JBrowse link
G Epha2 EPH receptor A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:3,648,395...3,673,856
Ensembl chrNW_004936474:3,648,550...3,673,861 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11005836) Ensembl
MGI		 PMID:11005836 GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Fnip2 folliculin interacting protein 2 involved_in ISS UniProt GO_REF:0000024 NCBI chrNW_004936576:5,221,619...5,335,133
Ensembl chrNW_004936576:5,221,613...5,335,191 		JBrowse link
G Hic1 HIC ZBTB transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:8,122,557...8,126,157
Ensembl chrNW_004936538:8,122,749...8,125,306 		JBrowse link
G Hmox1 heme oxygenase 1 ISO RGD PMID:11854317 RGD:625692 NCBI chrNW_004936492:5,042,353...5,049,216
Ensembl chrNW_004936492:5,042,330...5,049,311 		JBrowse link
G Htra2 HtrA serine peptidase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936556:741,718...746,016
Ensembl chrNW_004936556:741,718...749,090 		JBrowse link
G Ier3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11753682) Ensembl
MGI		 PMID:11753682 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO (PMID:20188669) UniProt PMID:20188669 NCBI chrNW_004936557:6,066,207...6,090,767 JBrowse link
G LOC101973872 bcl-2-like protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:1,039,970...1,044,942
Ensembl chrNW_004936722:1,053,326...1,059,477
Ensembl chrNW_004936722:1,053,326...1,059,477 		JBrowse link
G Mael maelstrom spermatogenic transposon silencer involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18694567) Ensembl
MGI		 PMID:18694567 GO_REF:0000107 NCBI chrNW_004936481:18,903,153...18,928,195
Ensembl chrNW_004936481:18,903,153...18,928,195 		JBrowse link
G Mcl1 MCL1 apoptosis regulator, BCL2 family member involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15901672) Ensembl
MGI
TreeGrafter		 PMID:15901672 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:803,452...806,966
Ensembl chrNW_004936580:804,903...806,796 		JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14562041) Ensembl
MGI		 PMID:14562041 GO_REF:0000107 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:1,111,256...1,113,651
Ensembl chrNW_004936733:1,111,958...1,113,010 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14744764)
(PMID:10097137)		 Ensembl
MGI		 PMID:10097137 PMID:14744764 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh6 mutS homolog 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15324697) Ensembl
MGI		 PMID:15324697 GO_REF:0000107 NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:14517295) MGI PMID:14517295 NCBI chrNW_004936470:20,480,844...20,485,955
Ensembl chrNW_004936470:20,480,829...20,485,965 		JBrowse link
G Nfatc4 nuclear factor of activated T cells 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242187) Ensembl
MGI		 PMID:17242187 GO_REF:0000107 NCBI chrNW_004936722:178,866...187,847
Ensembl chrNW_004936722:179,200...187,800 		JBrowse link
G Pcbp4 poly(rC) binding protein 4 involved_in ISO (PMID:10891498) UniProt PMID:10891498 NCBI chrNW_004936529:3,304,171...3,308,422
Ensembl chrNW_004936529:3,300,712...3,308,288 		JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242187) Ensembl
MGI		 PMID:17242187 GO_REF:0000107 NCBI chrNW_004936480:1,188,408...1,273,210
Ensembl chrNW_004936480:1,188,183...1,273,537 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (PMID:12952892) MGI PMID:12952892 NCBI chrNW_004936497:4,985,995...4,986,720 JBrowse link
G Pml PML nuclear body scaffold involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15626733)
(PMID:9806545)		 Ensembl
MGI		 PMID:9806545 PMID:15626733 GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Polb DNA polymerase beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10197627) Ensembl
MGI		 PMID:10197627 GO_REF:0000107 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12604618) Ensembl
MGI
TreeGrafter		 PMID:12604618 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Sfn stratifin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:11,274,927...11,279,427
Ensembl chrNW_004936474:11,246,534...11,279,433 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Skil SKI like proto-oncogene involved_in
acts_upstream_of		 IEA
ISO		 (PMID:10811619) Ensembl
MGI		 PMID:10811619 GO_REF:0000107 NCBI chrNW_004936593:2,109,414...2,132,871
Ensembl chrNW_004936593:2,109,223...2,132,882 		JBrowse link
G Sod2 superoxide dismutase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15642323) Ensembl
MGI		 PMID:15642323 GO_REF:0000107 NCBI chrNW_004936489:11,178,338...11,191,601
Ensembl chrNW_004936489:11,178,015...11,191,781 		JBrowse link
G Tnf tumor necrosis factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242187) Ensembl
MGI		 PMID:17242187 GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766 		JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242187) Ensembl
MGI		 PMID:17242187 GO_REF:0000107 NCBI chrNW_004936709:1,407,327...1,421,448
Ensembl chrNW_004936709:1,407,278...1,421,921 		JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242187) Ensembl
MGI
TreeGrafter		 PMID:17242187 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:908,414...935,765
Ensembl chrNW_004936474:908,485...934,177 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:1,219,101...1,229,937
Ensembl chrNW_004936524:1,219,907...1,229,723 		JBrowse link
G Uaca uveal autoantigen with coiled-coil domains and ankyrin repeats acts_upstream_of_or_within ISO (PMID:15271982) MGI PMID:15271982 NCBI chrNW_004936471:30,213,742...30,312,873
Ensembl chrNW_004936471:30,211,588...30,363,992 		JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:19966869) Ensembl
MGI		 PMID:19966869 GO_REF:0000107 NCBI chrNW_004936528:6,483,898...6,596,136
Ensembl chrNW_004936528:6,481,507...6,595,771 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor acts_upstream_of_or_within ISO (PMID:11005836) MGI PMID:11005836 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aen apoptosis enhancing nuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:14,601,671...14,611,613 JBrowse link
G Atad5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Bag6 BAG cochaperone 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,866,235...1,885,266
Ensembl chrNW_004936727:1,873,413...1,885,366 		JBrowse link
G Bbc3 BCL2 binding component 3 acts_upstream_of_or_within ISO (PMID:16151013) MGI PMID:16151013 NCBI chrNW_004936664:962,115...966,797 JBrowse link
G Bcl3 BCL3 transcription coactivator acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16384933) MGI
Ensembl		 PMID:16384933 GO_REF:0000107 NCBI chrNW_004936706:1,410,848...1,427,822
Ensembl chrNW_004936706:1,416,249...1,427,407 		JBrowse link
G Brca2 BRCA2 DNA repair associated acts_upstream_of_or_within ISO (PMID:15735671)
(PMID:17476307)		 MGI PMID:15735671 PMID:17476307 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Cdip1 cell death inducing p53 target 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17599062) MGI
TreeGrafter
Ensembl		 PMID:17599062 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936530:4,559,062...4,578,896
Ensembl chrNW_004936530:4,556,566...4,562,503 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12952892) Ensembl
MGI		 PMID:12952892 GO_REF:0000107 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10710310) Ensembl
MGI		 PMID:10710310 GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Ddit4 DNA damage inducible transcript 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:6,646,864...6,648,982
Ensembl chrNW_004936521:6,646,797...6,648,983 		JBrowse link
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:5,542,873...5,555,469
Ensembl chrNW_004936545:5,542,803...5,554,136 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:22768269) Ensembl
MGI		 PMID:22768269 GO_REF:0000107 NCBI chrNW_004936471:6,835,410...6,838,582
Ensembl chrNW_004936471:6,835,930...6,838,544 		JBrowse link
G Ep300 E1A binding protein p300 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537918) Ensembl
MGI
TreeGrafter		 PMID:16537918 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936690:2,293,740...2,353,450
Ensembl chrNW_004936690:2,265,849...2,274,199
Ensembl chrNW_004936690:2,265,849...2,274,199 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537918) Ensembl
MGI
TreeGrafter		 PMID:16537918 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936592:3,800,619...3,934,347
Ensembl chrNW_004936592:3,809,452...3,934,327 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10097137) Ensembl
MGI		 PMID:10097137 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11896600) Ensembl
MGI		 PMID:11896600 GO_REF:0000107 NCBI chrNW_004936501:11,998,064...11,999,431
Ensembl chrNW_004936501:11,997,834...11,999,709 		JBrowse link
G Phlda3 pleckstrin homology like domain family A member 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936567:2,981,632...2,984,906
Ensembl chrNW_004936567:2,981,602...2,984,903 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 acts_upstream_of_or_within ISO (PMID:10807576) MGI PMID:10807576 NCBI chrNW_004936497:4,985,995...4,986,720 JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma involved_in ISO (PMID:17245430) UniProt PMID:17245430 NCBI chrNW_004936835:54,478...192,486
Ensembl chrNW_004936835:96,930...192,756 		JBrowse link
G Pycard PYD and CARD domain containing involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,550,702...13,552,774
Ensembl chrNW_004936501:13,550,679...13,552,805 		JBrowse link
G Rps27l ribosomal protein S27 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:23,738,896...23,742,355
Ensembl chrNW_004936471:23,738,823...23,745,382 		JBrowse link
G Shisa5 shisa family member 5 acts_upstream_of_or_within ISO (PMID:12135983) MGI PMID:12135983 NCBI chrNW_004936529:266,671...292,103
Ensembl chrNW_004936529:266,456...269,732 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Snw1 SNW domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:6,494,556...6,531,297
Ensembl chrNW_004936488:6,494,562...6,531,600 		JBrowse link
G Tmem109 transmembrane protein 109 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20060811) Ensembl
MGI
TreeGrafter		 PMID:20060811 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936581:2,009,357...2,019,381
Ensembl chrNW_004936581:2,009,162...2,019,426 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15735665) Ensembl
MGI		 PMID:15735665 GO_REF:0000107 NCBI chrNW_004936524:1,219,101...1,229,937
Ensembl chrNW_004936524:1,219,907...1,229,723 		JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14654789), (PMID:14744935)
(PMID:12952892)
(PMID:12135983)
(PMID:15983387)
(PMID:17476307)
(PMID:16286009)
(PMID:16777961)		 MGI
Ensembl		 PMID:12135983 PMID:12952892 PMID:14654789 PMID:14744935 PMID:15983387 More... GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Tp63 tumor protein p63 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17122775) Ensembl
MGI		 PMID:17122775 GO_REF:0000107 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729 		JBrowse link
G Tp73 tumor protein p73 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464 		JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in ISO (PMID:16901786) UniProt PMID:16901786 NCBI chrNW_004936612:742,777...804,919
Ensembl chrNW_004936612:742,725...804,921 		JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004936496:7,149,501...7,182,771 JBrowse link
meiotic DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spo11 SPO11 initiator of meiotic double strand breaks involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936530:183,271...197,549
Ensembl chrNW_004936530:183,271...197,335 		JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26490168) Ensembl
MGI		 PMID:26490168 GO_REF:0000107 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G CUNH14orf39 chromosome unknown C14orf39 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936495:4,660,616...4,695,338
Ensembl chrNW_004936495:4,660,641...4,694,402 		JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:4,440,638...4,473,301
Ensembl chrNW_004936490:4,439,097...4,473,357 		JBrowse link
meiotic DNA recombinase assembly involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Swi5 SWI5 homologous recombination repair protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936487:15,814,463...15,822,783
Ensembl chrNW_004936487:15,814,102...15,823,311 		JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22011390) InterPro
MGI
Ensembl		 PMID:22011390 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936677:167,324...197,860
Ensembl chrNW_004936677:167,324...196,188 		JBrowse link
G Sycp1 synaptonemal complex protein 1 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chrNW_004936492:12,316,868...12,326,778
Ensembl chrNW_004936492:12,316,869...12,330,251 		JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO (PMID:22164254) MGI PMID:22164254 NCBI chrNW_004936612:2,297,754...2,303,130 JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO (PMID:27760146) MGI PMID:27760146 NCBI chrNW_004936496:7,149,501...7,182,771 JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 involved_in ISO (PMID:14636568)
(PMID:9788596)
(PMID:11809771)		 UniProt PMID:9788596 PMID:11809771 PMID:14636568 NCBI chrNW_004936526:8,570,488...8,627,004 JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10096563), (PMID:8674118)
(PMID:10747038)
(PMID:10359802), (PMID:10429667), (PMID:10851078), (PMID:11313994), (PMID:16204034), (PMID:16728433), (PMID:9500552)
(PMID:10657972), (PMID:9560238)
(PMID:23603115)		 InterPro
MGI
TreeGrafter
Ensembl		 PMID:8674118 PMID:9500552 PMID:9560238 PMID:10096563 PMID:10359802 More... GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936473:26,556,636...26,600,830
Ensembl chrNW_004936473:26,556,611...26,603,736 		JBrowse link
G Mlh3 mutL homolog 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16204034) Ensembl
MGI
TreeGrafter
InterPro		 PMID:16204034 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:4,164,322...4,195,408
Ensembl chrNW_004936488:4,164,918...4,195,517 		JBrowse link
G Msh2 mutS homolog 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11555625)
(PMID:10581038), (PMID:17331550), (PMID:23071719), (PMID:7628020), (PMID:9697842)
(PMID:10874005), (PMID:11046134), (PMID:11890935), (PMID:16728433), (PMID:8706033), (PMID:9288110)
(PMID:14744764)
(PMID:16728433)
(PMID:12531017)
(PMID:10992298)
(PMID:9157971), (PMID:9244348)
(PMID:23603115)		 MGI
TreeGrafter
InterPro
UniProt
Ensembl		 PMID:7628020 PMID:8706033 PMID:9157971 PMID:9244348 PMID:9288110 More... GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Msh3 mutS homolog 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11691815)
(PMID:10706084)
(PMID:10706084), (PMID:16728433)
(PMID:16728433)		 InterPro
MGI
TreeGrafter
Ensembl		 PMID:10706084 PMID:11691815 PMID:16728433 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936469:82,967...275,772
Ensembl chrNW_004936469:83,285...273,561 		JBrowse link
G Msh4 mutS homolog 4 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004936571:2,827,283...2,898,562
Ensembl chrNW_004936571:2,822,058...2,898,562 		JBrowse link
G Msh5 mutS homolog 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936727:1,776,038...1,794,152
Ensembl chrNW_004936727:1,777,570...1,793,711 		JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16728433)
(PMID:11691815)
(PMID:12370835), (PMID:16728433), (PMID:9390556)
(PMID:15324697)
(PMID:23071719)
(PMID:23603115)		 RGD
MGI
TreeGrafter
Ensembl
InterPro		 PMID:9390556 PMID:11691815 PMID:12370835 PMID:15324697 PMID:16728433 More... GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2292505 NCBI chrNW_004936508:4,708,661...4,728,671
Ensembl chrNW_004936508:4,708,661...4,728,787 		JBrowse link
G Mutyh mutY DNA glycosylase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:26,484,316...26,492,652
Ensembl chrNW_004936474:26,481,211...26,493,019 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9500552) Ensembl
MGI
TreeGrafter
InterPro		 PMID:9500552 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936506:8,118,816...8,197,040
Ensembl chrNW_004936506:8,119,494...8,197,768 		JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10359802), (PMID:10429667), (PMID:16204034), (PMID:16728433), (PMID:23071719), (PMID:9500552)
(PMID:16204034)
(PMID:11313994)		 InterPro
MGI
TreeGrafter		 PMID:9500552 PMID:10359802 PMID:10429667 PMID:11313994 PMID:16204034 More... GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936750:439,396...468,747 JBrowse link
G Rnaseh2a ribonuclease H2 subunit A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23603115) MGI
TreeGrafter
Ensembl		 PMID:23603115 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936659:1,897,777...1,905,526
Ensembl chrNW_004936659:1,897,769...1,905,457 		JBrowse link
G Rpa1 replication protein A1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262)
(MGI:5705200|PMID:26300262)		 UniProt PMID:26300262 MGI:5705200 NCBI chrNW_004936658:1,657,226...1,734,150 JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd4 coiled-coil-helix-coiled-coil-helix domain containing 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24101517) Ensembl
MGI		 PMID:24101517 GO_REF:0000107 NCBI chrNW_004936602:93,126...99,695
Ensembl chrNW_004936602:93,123...95,810 		JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:9,843,867...9,884,248
Ensembl chrNW_004936521:9,843,900...9,883,932 		JBrowse link
G Lig3 DNA ligase 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:21390132)
(PMID:21390131), (PMID:21390132)		 BHF-UCL
MGI		 PMID:21390131 PMID:21390132 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
G Mgme1 mitochondrial genome maintenance exonuclease 1 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936485:2,154,446...2,167,633
Ensembl chrNW_004936485:2,153,295...2,166,908 		JBrowse link
G Neurl4 neuralized E3 ubiquitin protein ligase 4 acts_upstream_of_or_within ISO (PMID:35157000) MGI PMID:35157000 NCBI chrNW_004936595:612,068...624,494
Ensembl chrNW_004936595:612,070...624,693 		JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25378300) MGI
Ensembl		 PMID:25378300 GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24101517) Ensembl
MGI		 PMID:24101517 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
mitotic DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc7 cell division cycle 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936537:7,445,882...7,515,196
Ensembl chrNW_004936537:7,488,776...7,514,322 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Znf830 zinc finger protein 830 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23213458) Ensembl
MGI
TreeGrafter		 PMID:23213458 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:243,557...245,353
Ensembl chrNW_004936538:244,188...245,300 		JBrowse link
mitotic G1 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnd1 cyclin D1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936599:973,838...983,316 JBrowse link
G Dgkz diacylglycerol kinase zeta involved_in ISO (PMID:16286473) UniProt PMID:16286473 NCBI chrNW_004936562:2,690,907...2,733,455
Ensembl chrNW_004936562:2,690,858...2,733,620 		JBrowse link
G Fbxo31 F-box protein 31 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:1,801,539...1,831,988
Ensembl chrNW_004936641:1,801,548...1,830,440 		JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19744960) Ensembl
MGI		 PMID:19744960 GO_REF:0000107 NCBI chrNW_004936525:4,301,003...4,432,125
Ensembl chrNW_004936525:4,304,629...4,403,089 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rps27l ribosomal protein S27 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:23,738,896...23,742,355
Ensembl chrNW_004936471:23,738,823...23,745,382 		JBrowse link
G Sde2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:2,763,243...2,779,506
Ensembl chrNW_004936526:2,760,639...2,779,657 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107883) Ensembl
MGI		 PMID:16107883 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Trex1 three prime repair exonuclease 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23993650)
(PMID:18045533)		 Ensembl
MGI		 PMID:18045533 PMID:23993650 GO_REF:0000107 NCBI chrNW_004936529:264,535...266,451
Ensembl chrNW_004936529:264,468...266,422 		JBrowse link
G Wac WW domain containing adaptor with coiled-coil involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936613:2,793,706...2,862,984
Ensembl chrNW_004936613:2,794,732...2,865,913 		JBrowse link
mitotic G2 DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,202,668...1,217,825
Ensembl chrNW_004936738:1,202,608...1,221,321 		JBrowse link
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936596:3,574,507...3,582,370
Ensembl chrNW_004936596:3,574,476...3,582,421 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Blm BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProt PMID:17525340 PMID:17643121 PMID:19261748 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Brsk1 BR serine/threonine kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:541,831...567,197
Ensembl chrNW_004936886:546,222...570,521 		JBrowse link
G Ccng1 cyclin G1 ISO RGD PMID:9464250 RGD:2316029 NCBI chrNW_004936515:614,287...621,213
Ensembl chrNW_004936515:614,290...619,963 		JBrowse link
G Cdc14b cell division cycle 14B involved_in ISO (PMID:18662541) UniProt PMID:18662541 NCBI chrNW_004936487:430,449...482,517
Ensembl chrNW_004936487:554,611...564,782 		JBrowse link
G Cdk1 cyclin dependent kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12937170) Ensembl
MGI
TreeGrafter		 PMID:12937170 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936614:2,300,682...2,313,611
Ensembl chrNW_004936614:2,300,513...2,313,624 		JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:13,345,443...13,355,841
Ensembl chrNW_004936490:13,345,443...13,355,841 		JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182 		JBrowse link
G Chek1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Clspn claspin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:18,267,740...18,304,658
Ensembl chrNW_004936474:18,268,984...18,300,211 		JBrowse link
G Creb3l1 cAMP responsive element binding protein 3 like 1 involved_in ISO (PMID:37178686) UniProt PMID:37178686 NCBI chrNW_004936562:2,739,908...2,772,484
Ensembl chrNW_004936562:2,739,905...2,772,484 		JBrowse link
G CUNH10orf90 chromosome unknown C10orf90 homolog involved_in ISO (MGI:4455105|PMID:20154723) UniProt PMID:20154723 MGI:4455105 NCBI chrNW_004936486:14,311,976...14,499,733
Ensembl chrNW_004936486:14,311,431...14,499,902 		JBrowse link
G Donson DNA replication fork stabilization factor DONSON involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:8,712,168...8,720,728
Ensembl chrNW_004936500:8,712,205...8,739,953 		JBrowse link
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936557:1,347,991...1,389,836
Ensembl chrNW_004936557:1,347,991...1,389,836 		JBrowse link
G Foxn3 forkhead box N3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:16,560,732...16,828,972
Ensembl chrNW_004936488:16,554,925...16,934,125 		JBrowse link
G Foxo4 forkhead box O4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12048180) Ensembl
MGI		 PMID:12048180 GO_REF:0000107 NCBI chrNW_004936762:495,271...501,278
Ensembl chrNW_004936762:493,910...501,531 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,000,872...2,007,569
Ensembl chrNW_004936588:1,993,721...2,009,240 		JBrowse link
G Ier3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G LOC101960348 E3 ubiquitin-protein ligase TRIM39 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:88,387...104,420
Ensembl chrNW_004936837:105,575...107,719
Ensembl chrNW_004936837:105,575...107,719 		JBrowse link
G Mbtps1 membrane bound transcription factor peptidase, site 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:3,696,506...3,751,558
Ensembl chrNW_004936641:3,696,536...3,751,598 		JBrowse link
G Mbtps2 membrane bound transcription factor peptidase, site 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936624:2,464,152...2,510,984
Ensembl chrNW_004936624:2,463,909...2,511,158 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14690604) Ensembl
MGI
TreeGrafter		 PMID:14690604 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Mrnip MRN complex interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936739:926,678...955,024 JBrowse link
G Nbn nibrin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18614044) Ensembl
MGI
TreeGrafter
InterPro		 PMID:18614044 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:1,334,487...1,343,867
Ensembl chrNW_004936664:1,334,510...1,342,321 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Rint1 RAD50 interactor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:18,311,698...18,334,946
Ensembl chrNW_004936479:18,311,699...18,340,816 		JBrowse link
G Syf2 SYF2 pre-mRNA splicing factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22448250) Ensembl
MGI		 PMID:22448250 GO_REF:0000107 NCBI chrNW_004936474:9,970,047...9,975,260
Ensembl chrNW_004936474:9,968,469...9,972,799 		JBrowse link
G Taok1 TAO kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:5,531,639...5,668,119
Ensembl chrNW_004936538:5,531,633...5,659,239 		JBrowse link
G Taok2 TAO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,477,032...12,495,298
Ensembl chrNW_004936501:12,477,032...12,495,501 		JBrowse link
G Taok3 TAO kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:2,116,804...2,305,331
Ensembl chrNW_004936668:2,222,866...2,304,151 		JBrowse link
G Topbp1 DNA topoisomerase II binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936529:6,788,713...6,841,824
Ensembl chrNW_004936529:6,788,187...6,841,888 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProt PMID:17525340 PMID:17525341 PMID:17525342 PMID:17643121 PMID:19261748 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
mitotic intra-S DNA damage checkpoint signaling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:4,729,984...4,826,367
Ensembl chrNW_004936509:4,732,930...4,826,443 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:11,307,739...11,316,203
Ensembl chrNW_004936490:11,308,393...11,314,785 		JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:2,217,352...2,220,556
Ensembl chrNW_004936694:2,217,811...2,220,432 		JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936602:3,162,177...3,220,468
Ensembl chrNW_004936602:3,161,960...3,209,868 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14690604), (PMID:18614044) Ensembl
MGI
TreeGrafter		 PMID:14690604 PMID:18614044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15533840) Ensembl
MGI		 PMID:15533840 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936599:3,670,759...3,677,375
Ensembl chrNW_004936599:3,670,862...3,677,239 		JBrowse link
G Nek11 NIMA related kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:4,484,397...4,785,902
Ensembl chrNW_004936529:4,487,656...4,785,912 		JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:216,216...252,178
Ensembl chrNW_004936480:216,208...252,070 		JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9766521) Ensembl
MGI
TreeGrafter		 PMID:9766521 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:3,462,187...3,489,741
Ensembl chrNW_004936558:3,459,223...3,489,413 		JBrowse link
G Tipin TIMELESS interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:26,516,511...26,531,403
Ensembl chrNW_004936471:26,517,042...26,531,410 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15533840) Ensembl
MGI		 PMID:15533840 GO_REF:0000107 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
negative regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 involved_in ISO (PMID:23728299) UniProt PMID:23728299 NCBI chrNW_004936596:5,176,682...5,246,102
Ensembl chrNW_004936596:5,177,147...5,246,518 		JBrowse link
G Chek2 checkpoint kinase 2 ISO RGD PMID:20637979 RGD:10401658 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
negative regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule (IN blood group) involved_in ISO (PMID:17045821)
(MGI:3690285|PMID:17045821)		 BHF-UCL PMID:17045821 MGI:3690285 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Cd74 CD74 molecule involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750 		JBrowse link
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:5,317,109...5,423,593
Ensembl chrNW_004936500:5,316,164...5,404,353 		JBrowse link
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:5,947,157...5,956,874
Ensembl chrNW_004936557:5,947,157...5,956,958 		JBrowse link
G Kdm1a lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089
Ensembl chrNW_004936474:8,262,885...8,319,092 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:18,966,239...19,016,829
Ensembl chrNW_004936469:18,962,655...19,017,100 		JBrowse link
G Mdm2 MDM2 proto-oncogene involved_in ISO (PMID:10360174), (PMID:9529249) BHF-UCL PMID:9529249 PMID:10360174 NCBI chrNW_004936545:6,709,903...6,732,334 JBrowse link
G Mif macrophage migration inhibitory factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442 		JBrowse link
G Psmd10 proteasome 26S subunit, non-ATPase 10 involved_in ISO (PMID:16023600) UniProt PMID:16023600 NCBI chrNW_004936499:6,691,758...6,698,515
Ensembl chrNW_004936499:6,691,476...6,702,986 		JBrowse link
G Pttg1ip PTTG1 interacting protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24506068) MGI
Ensembl		 PMID:24506068 GO_REF:0000107 NCBI chrNW_004936778:1,350,647...1,379,497
Ensembl chrNW_004936778:1,344,481...1,363,811 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:3,813,916...3,817,642
Ensembl chrNW_004936590:3,813,888...3,817,642 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:20817677) MGI PMID:20817677 NCBI chrNW_004936529:3,304,171...3,308,422
Ensembl chrNW_004936529:3,300,712...3,308,288 		JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cgas cyclic GMP-AMP synthase involved_in ISO (PMID:35210392) UniProt PMID:35210392 NCBI chrNW_004936859:797,469...807,036 JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:5,154,988...5,163,919
Ensembl chrNW_004936599:5,153,993...5,173,046 		JBrowse link
G Rnf169 ring finger protein 169 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:3,675,075...3,783,514
Ensembl chrNW_004936498:3,685,572...3,776,466 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G C1qbp complement C1q binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936677:2,371,400...2,376,608
Ensembl chrNW_004936677:2,371,418...2,376,608 		JBrowse link
G Cgas cyclic GMP-AMP synthase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936859:797,469...807,036 JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 involved_in ISO (PMID:28512243) UniProt PMID:28512243 NCBI chrNW_004936485:17,966,993...18,021,191 JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) TreeGrafter
MGI		 PMID:25520194 GO_REF:0000118 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Helb DNA helicase B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G Klhl15 kelch like family member 15 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936624:552,220...593,546
Ensembl chrNW_004936624:552,177...591,578 		JBrowse link
G Kmt5a lysine methyltransferase 5A involved_in ISO (PMID:27338793) UniProt PMID:27338793 NCBI chrNW_004936558:1,346,040...1,366,601 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Magef1 MAGE family member F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,178,399...5,180,058
Ensembl chrNW_004936578:5,178,609...5,179,547 		JBrowse link
G Parpbp PARP1 binding protein involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936492:11,948,765...11,994,838
Ensembl chrNW_004936492:11,948,765...11,994,838 		JBrowse link
G Plk1 polo like kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:8,321,415...8,332,414
Ensembl chrNW_004936501:8,321,305...8,332,424 		JBrowse link
G Polq DNA polymerase theta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:7,904,166...8,004,305
Ensembl chrNW_004936536:7,904,981...8,004,199 		JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936499:8,058,973...8,122,332
Ensembl chrNW_004936499:8,058,972...8,122,287 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) Ensembl
MGI		 PMID:25520194 GO_REF:0000107 NCBI chrNW_004936594:829,296...862,615
Ensembl chrNW_004936594:828,475...862,912 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997 		JBrowse link
G Senp3 SUMO specific peptidase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:844,073...850,951
Ensembl chrNW_004936595:844,023...850,949 		JBrowse link
G Shld1 shieldin complex subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:13,179,218...13,267,980
Ensembl chrNW_004936485:13,176,426...13,267,953 		JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:5,315,297...5,400,752
Ensembl chrNW_004936601:5,315,261...5,396,301 		JBrowse link
G Shld3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:6,589,395...6,668,242
Ensembl chrNW_004936471:6,589,564...6,668,305 		JBrowse link
G Ubqln4 ubiquilin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:5,299,864...5,316,583
Ensembl chrNW_004936580:5,301,389...5,315,756 		JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aunip aurora kinase A and ninein interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:10,409,463...10,430,158
Ensembl chrNW_004936474:10,409,022...10,430,187 		JBrowse link
G Cyren cell cycle regulator of NHEJ involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936579:768,153...776,053
Ensembl chrNW_004936579:768,252...770,440 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:3,944,419...3,958,289
Ensembl chrNW_004936545:3,944,419...4,064,193 		JBrowse link
G Hsf1 heat shock transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936674:466,495...528,072
Ensembl chrNW_004936674:466,456...530,317 		JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19506022) MGI
Ensembl		 PMID:19506022 GO_REF:0000107 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ackr3 atypical chemokine receptor 3 involved_in ISO (PMID:20388803) BHF-UCL PMID:20388803 NCBI chrNW_004936525:1,559,575...1,570,679 JBrowse link
G Atad5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Bcl2l1 BCL2 like 1 involved_in ISO (PMID:16608847) BHF-UCL PMID:16608847 NCBI chrNW_004936485:18,654,046...18,707,324 JBrowse link
G Bid BH3 interacting domain death agonist involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26219591) Ensembl
MGI		 PMID:26219591 GO_REF:0000107 NCBI chrNW_004936807:708,340...750,127
Ensembl chrNW_004936807:708,276...750,093 		JBrowse link
G Ccar2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,341,455...6,356,677
Ensembl chrNW_004936555:6,341,390...6,356,668 		JBrowse link
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) BHF-UCL PMID:15750620 NCBI chrNW_004936659:840,602...843,078 JBrowse link
G Clu clusterin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:499,745...513,515
Ensembl chrNW_004936675:499,199...513,836 		JBrowse link
G Cxcl12 C-X-C motif chemokine ligand 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936617:4,224,131...4,239,080
Ensembl chrNW_004936617:4,224,131...4,238,796 		JBrowse link
G Ddias DNA damage induced apoptosis suppressor involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936498:11,115,055...11,127,215
Ensembl chrNW_004936498:11,115,209...11,128,948 		JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in ISO (PMID:14561758) BHF-UCL PMID:14561758 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021 		JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:4,456,498...4,462,436
Ensembl chrNW_004936514:4,456,484...4,462,987 		JBrowse link
G Snai2 snail family transcriptional repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:3,813,916...3,817,642
Ensembl chrNW_004936590:3,813,888...3,817,642 		JBrowse link
G Tmem161a transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,274,989...2,287,288
Ensembl chrNW_004936596:2,274,989...2,287,580 		JBrowse link
G Tpt1 tumor protein, translationally-controlled 1 acts_upstream_of_or_within ISO (PMID:11598139) MGI PMID:11598139 NCBI chrNW_004936791:1,439,997...1,443,959
Ensembl chrNW_004936791:1,440,004...1,443,959 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:5,606,690...5,619,856
Ensembl chrNW_004936487:5,606,693...5,619,856 		JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19966869) Ensembl
MGI		 PMID:19966869 GO_REF:0000107 NCBI chrNW_004936528:6,483,898...6,596,136
Ensembl chrNW_004936528:6,481,507...6,595,771 		JBrowse link
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atad5 ATPase family AAA domain containing 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Bcl2l12 BCL2 like 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20837658) Ensembl
MGI		 PMID:20837658 GO_REF:0000107 NCBI chrNW_004936664:3,482,562...3,488,663
Ensembl chrNW_004936664:3,482,595...3,488,663 		JBrowse link
G Cd44 CD44 molecule (IN blood group) involved_in ISO (PMID:17045821)
(MGI:3690285|PMID:17045821)		 BHF-UCL PMID:17045821 MGI:3690285 NCBI chrNW_004936533:2,949,026...3,033,166 JBrowse link
G Cd74 CD74 molecule involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936504:4,522,576...4,532,289
Ensembl chrNW_004936504:4,522,751...4,531,750 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22768269) Ensembl
MGI		 PMID:22768269 GO_REF:0000107 NCBI chrNW_004936471:6,835,410...6,838,582
Ensembl chrNW_004936471:6,835,930...6,838,544 		JBrowse link
G Kdm1a lysine demethylase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089
Ensembl chrNW_004936474:8,262,885...8,319,092 		JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:18,966,239...19,016,829
Ensembl chrNW_004936469:18,962,655...19,017,100 		JBrowse link
G Mif macrophage migration inhibitory factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:1,207,058...1,208,010
Ensembl chrNW_004936619:1,203,746...1,208,442 		JBrowse link
G Muc1 mucin 1, cell surface associated involved_in ISO (PMID:15710329) BHF-UCL PMID:15710329 NCBI chrNW_004936580:4,691,870...4,694,092 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Triap1 TP53 regulated inhibitor of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:500,815...503,158
Ensembl chrNW_004936668:500,813...503,148 		JBrowse link
G Znf385a zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,562,635...11,585,026
Ensembl chrNW_004936512:11,561,435...11,585,402 		JBrowse link
negative regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp1r10 protein phosphatase 1 regulatory subunit 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936837:276,423...296,600
Ensembl chrNW_004936837:277,618...286,515 		JBrowse link
negative regulation of protection from non-homologous end joining at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in ISO (MGI:3758502|PMID:14690602) BHF-UCL PMID:14690602 MGI:3758502 NCBI chrNW_004936469:2,248,367...2,495,215
Ensembl chrNW_004936469:2,248,039...2,495,226 		JBrowse link
negative regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2 DNA repair associated involved_in ISO (PMID:16845393) UniProt PMID:16845393 NCBI chrNW_004936472:26,945,659...27,017,693 JBrowse link
G Brip1 BRCA1 interacting helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G Cetn2 centrin 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936714:274,098...279,177
Ensembl chrNW_004936714:274,036...279,381 		JBrowse link
G Commd1 copper metabolism domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:7,247,160...7,421,039
Ensembl chrNW_004936491:7,247,140...7,420,921 		JBrowse link
G Dclre1a DNA cross-link repair 1A acts_upstream_of_or_within ISO (PMID:10848582) MGI PMID:10848582 NCBI chrNW_004936486:4,199,527...4,221,984
Ensembl chrNW_004936486:4,199,410...4,221,761 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,960,406...1,974,809
Ensembl chrNW_004936562:1,960,406...1,974,867 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:3290851)
(PMID:8275084)		 MGI
Ensembl		 PMID:3290851 PMID:8275084 GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11950998), (PMID:9651581) InterPro
MGI
Ensembl		 PMID:9651581 PMID:11950998 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10644440) MGI
Ensembl		 PMID:10644440 GO_REF:0000107 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10022922) InterPro
MGI		 PMID:10022922 GO_REF:0000002 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:916,377...949,833
Ensembl chrNW_004936483:912,346...949,833 		JBrowse link
G Fancc FA complementation group C involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8704201) Ensembl
MGI
TreeGrafter		 PMID:8704201 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936626:3,980,311...4,147,042
Ensembl chrNW_004936626:3,982,647...4,159,976 		JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936528:903,429...940,308
Ensembl chrNW_004936528:903,322...940,313 		JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936558:1,176,154...1,196,028
Ensembl chrNW_004936558:1,173,064...1,196,063 		JBrowse link
G Gtf2h4 general transcription factor IIH subunit 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936837:546,561...552,686
Ensembl chrNW_004936837:546,509...552,754 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23637614) MGI
Ensembl
InterPro		 PMID:23637614 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938 		JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:22,393,952...22,414,349
Ensembl chrNW_004936478:22,400,111...22,414,115 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G LOC101957203 general transcription factor IIH subunit 2 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936480:72,730...92,868 JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936495:4,909,427...5,128,113
Ensembl chrNW_004936495:4,909,380...5,128,113 		JBrowse link
G Nthl1 nth like DNA glycosylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,993,443...2,000,323
Ensembl chrNW_004936694:1,993,443...2,000,333 		JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19506022) InterPro
MGI
Ensembl		 PMID:19506022 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936602:3,411,106...3,418,826
Ensembl chrNW_004936602:3,413,282...3,418,831 		JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO (PMID:1508673) UniProt PMID:1508673 NCBI chrNW_004936836:1,151...287,438 JBrowse link
G Poll DNA polymerase lambda involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:4,184,979...4,194,596
Ensembl chrNW_004936600:4,185,046...4,194,618 		JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein involved_in IEA Ensembl
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936659:2,001,356...2,007,520
Ensembl chrNW_004936659:2,001,301...2,010,215 		JBrowse link
G Rad23b RAD23 homolog B, nucleotide excision repair protein involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936559:5,224,679...5,264,853
Ensembl chrNW_004936559:5,226,223...5,264,491 		JBrowse link
G Rpa1 replication protein A1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,941,074...7,997,062
Ensembl chrNW_004936538:7,946,403...7,994,864 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rpa3 replication protein A3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936585:2,267,113...2,270,635
Ensembl chrNW_004936585:2,266,706...2,272,259 		JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:720,585...744,477
Ensembl chrNW_004936694:722,481...744,600 		JBrowse link
G Tp53 tumor protein p53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11950998), (PMID:12509265) InterPro
MGI
Ensembl		 PMID:11950998 PMID:12509265 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9067411)
(PMID:17049932), (PMID:19615386)
(PMID:12815074)		 InterPro
MGI
TreeGrafter
Ensembl		 PMID:9067411 PMID:12815074 PMID:17049932 PMID:19615386 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
nucleotide-excision repair involved in interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:2,301,072...2,329,346
Ensembl chrNW_004936501:2,300,835...2,329,351 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpa XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G Polb DNA polymerase beta NOT|involved_in ISO (PMID:20227374) UniProt PMID:20227374 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936889:231,373...250,985
Ensembl chrNW_004936889:231,373...250,987
Ensembl chrNW_004936889:231,373...250,987 		JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:3,544,001...3,584,456
Ensembl chrNW_004936498:3,543,914...3,585,934 		JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,575,255...2,622,867
Ensembl chrNW_004936660:2,575,360...2,622,852 		JBrowse link
G Polk DNA polymerase kappa involved_in ISO (PMID:20227374) UniProt PMID:20227374 NCBI chrNW_004936549:1,199,810...1,261,889 JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23637614) Ensembl
MGI
TreeGrafter		 PMID:23637614 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936489:9,983,935...9,993,179
Ensembl chrNW_004936489:9,992,156...9,992,938 		JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cry2 cryptochrome circadian regulator 2 NOT|involved_in ISO (PMID:12627958) UniProt PMID:12627958 NCBI chrNW_004936562:3,133,849...3,168,472
Ensembl chrNW_004936562:3,133,633...3,168,480 		JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam168a family with sequence similarity 168 member A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:2,601,341...2,784,446
Ensembl chrNW_004936498:2,605,788...2,670,164 		JBrowse link
G LOC101962552 protein FAM168A-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936855:689,226...690,369 JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
positive regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccar2 cell cycle and apoptosis regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,341,455...6,356,677
Ensembl chrNW_004936555:6,341,390...6,356,668 		JBrowse link
G Tti1 TELO2 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:3,303,258...3,353,487
Ensembl chrNW_004936561:3,303,212...3,354,294 		JBrowse link
positive regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankrd1 ankyrin repeat domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:3,502,844...3,510,919
Ensembl chrNW_004936601:3,502,844...3,511,003 		JBrowse link
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Atr ATR serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936540:4,074,543...4,178,859
Ensembl chrNW_004936540:4,074,570...4,178,898 		JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:5,005,211...5,013,439
Ensembl chrNW_004936541:5,004,692...5,013,350 		JBrowse link
G Eef1e1 eukaryotic translation elongation factor 1 epsilon 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15680327) Ensembl
MGI
InterPro		 PMID:15680327 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936534:4,522,115...4,532,514
Ensembl chrNW_004936534:4,522,180...4,532,548 		JBrowse link
G Hic1 HIC ZBTB transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:8,122,557...8,126,157
Ensembl chrNW_004936538:8,122,749...8,125,306 		JBrowse link
G Pla2r1 phospholipase A2 receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:18,679,840...18,789,655
Ensembl chrNW_004936469:18,679,914...18,789,369 		JBrowse link
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 involved_in ISO (PMID:15102863)
(MGI:2679929|PMID:14500851)		 UniProt PMID:14500851 PMID:15102863 MGI:2679929 NCBI chrNW_004936497:4,985,995...4,986,720 JBrowse link
G Spred1 sprouty related EVH1 domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:1,952,532...2,039,561
Ensembl chrNW_004936471:1,952,532...2,037,501 		JBrowse link
G Spred2 sprouty related EVH1 domain containing 2 involved_in ISO (MGI:5318016|PMID:20736167) BHF-UCL PMID:20736167 MGI:5318016 NCBI chrNW_004936491:10,053,546...10,170,950
Ensembl chrNW_004936491:10,053,545...10,170,976 		JBrowse link
positive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ing4 inhibitor of growth family member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936709:1,140,485...1,147,982
Ensembl chrNW_004936709:1,140,345...1,149,843 		JBrowse link
G Rpl26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,603,913...1,609,125
Ensembl chrNW_004936595:1,603,413...1,609,132 		JBrowse link
G Znf385a zinc finger protein 385A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:11,562,635...11,585,026
Ensembl chrNW_004936512:11,561,435...11,585,402 		JBrowse link
G Znhit1 zinc finger HIT-type containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:1,098,095...1,104,731
Ensembl chrNW_004936543:1,097,588...1,105,162 		JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,202,668...1,217,825
Ensembl chrNW_004936738:1,202,608...1,221,321 		JBrowse link
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in ISO (MGI:3698695|PMID:17121854) UniProt PMID:17121854 MGI:3698695 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936596:3,574,507...3,582,370
Ensembl chrNW_004936596:3,574,476...3,582,421 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:19261748) UniProt PMID:17525340 PMID:19261748 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chrNW_004936594:3,906,714...3,911,604
Ensembl chrNW_004936594:3,906,697...3,911,714 		JBrowse link
G Ccdc117 coiled-coil domain containing 117 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,876,417...2,888,542
Ensembl chrNW_004936657:2,876,408...2,888,566 		JBrowse link
G Cebpg CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:2,435,672...2,439,056
Ensembl chrNW_004936570:2,438,187...2,438,639 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Egfr epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:7664335) UniProt PMID:7664335 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:6,223,745...6,401,985
Ensembl chrNW_004936514:6,223,719...6,341,326 		JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,191,391...12,295,380
Ensembl chrNW_004936474:12,191,389...12,295,458 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:1,325,521...1,466,216
Ensembl chrNW_004936560:1,337,842...1,462,285 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936556:678,073...681,157
Ensembl chrNW_004936556:677,944...681,147 		JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936517:9,632,870...9,649,525
Ensembl chrNW_004936517:9,632,870...9,649,527 		JBrowse link
G Ino80d INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,405,056...2,474,798
Ensembl chrNW_004936631:2,410,300...2,474,811 		JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,463,592...12,472,271
Ensembl chrNW_004936501:12,463,520...12,472,257 		JBrowse link
G Mcrs1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389
Ensembl chrNW_004936512:7,276,584...7,287,427 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:2,435,875...2,468,848
Ensembl chrNW_004936572:2,435,847...2,471,655 		JBrowse link
G Npas2 neuronal PAS domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:96,312...176,395
Ensembl chrNW_004936661:95,752...210,097 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chrNW_004936728:428,028...538,413
Ensembl chrNW_004936728:428,028...541,530 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:24939902) UniProt PMID:24939902 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:23760478)
(PMID:19203578), (PMID:19203579)		 UniProt PMID:19203578 PMID:19203579 PMID:23760478 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:18001824), (PMID:18001825) UniProt PMID:18001824 PMID:18001825 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tmem161a transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,274,989...2,287,288
Ensembl chrNW_004936596:2,274,989...2,287,580 		JBrowse link
G Trim28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:126,832...132,938
Ensembl chrNW_004937062:126,708...134,366 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:19261748) UniProt PMID:17525340 PMID:17525341 PMID:17525342 PMID:19261748 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Fam178b family with sequence similarity 178 member B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936744:808,845...894,128
Ensembl chrNW_004936744:810,446...893,049 		JBrowse link
G Fmn2 formin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:9,832,790...10,169,488
Ensembl chrNW_004936526:9,833,128...10,169,267 		JBrowse link
G Foxm1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:3,185,289...3,198,427
Ensembl chrNW_004936606:3,185,982...3,198,378 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936523:8,563,662...8,634,576
Ensembl chrNW_004936523:8,563,410...8,634,585 		JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,715,504...4,766,273
Ensembl chrNW_004936600:4,721,327...4,765,915 		JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Spire1 spire type actin nucleation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:2,151,990...2,292,307
Ensembl chrNW_004936626:2,151,827...2,227,374 		JBrowse link
G Spire2 spire type actin nucleation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:236,135...246,004
Ensembl chrNW_004936641:236,135...245,916 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:482,795...503,996
Ensembl chrNW_004936543:482,944...498,385 		JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672 		JBrowse link
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr2 actin related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:9,980,228...10,021,417
Ensembl chrNW_004936491:9,979,427...10,022,043 		JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:4,020,303...4,199,390
Ensembl chrNW_004936512:4,020,966...4,196,459 		JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25520194) MGI PMID:25520194 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brd8 bromodomain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:7,333,974...7,361,855
Ensembl chrNW_004936531:7,333,907...7,362,114 		JBrowse link
G Crebbp CREB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:552,447...663,237
Ensembl chrNW_004936694:553,753...663,617 		JBrowse link
G Dmap1 DNA methyltransferase 1 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:25,486,447...25,495,909
Ensembl chrNW_004936474:25,486,462...25,495,992 		JBrowse link
G Ep400 E1A binding protein p400 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,212,063...2,297,730
Ensembl chrNW_004936660:2,212,243...2,295,862 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:966,655...1,050,537
Ensembl chrNW_004936574:964,619...1,050,571 		JBrowse link
G Epc2 enhancer of polycomb homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:28,489,620...28,625,975
Ensembl chrNW_004936469:28,488,377...28,625,975 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) TreeGrafter
MGI		 PMID:25520194 GO_REF:0000118 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Fus FUS RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,529,732...13,541,102
Ensembl chrNW_004936501:13,529,803...13,540,764 		JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,590,557...2,615,241
Ensembl chrNW_004936588:2,590,329...2,618,604 		JBrowse link
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Ing3 inhibitor of growth family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:4,154,276...4,179,627
Ensembl chrNW_004936605:4,151,202...4,179,689 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G LOC101961559 E3 ubiquitin-protein ligase RNF126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:231,723...237,969
Ensembl chrNW_004936588:255,639...260,291
Ensembl chrNW_004936588:255,639...260,291 		JBrowse link
G Mbtd1 mbt domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:10,567,146...10,633,130
Ensembl chrNW_004936490:10,587,010...10,630,049 		JBrowse link
G Meaf6 MYST/Esa1 associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,732,278...19,754,228
Ensembl chrNW_004936474:19,729,465...19,754,261 		JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chrNW_004936471:37,073,920...37,097,216
Ensembl chrNW_004936471:37,073,895...37,097,235 		JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936499:10,636,711...10,647,442
Ensembl chrNW_004936499:10,636,776...10,647,442 		JBrowse link
G Mrgbp MRG domain binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,303,870...10,308,007
Ensembl chrNW_004936514:10,303,597...10,307,185 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chrNW_004936739:926,678...955,024 JBrowse link
G Ooep oocyte expressed protein involved_in ISO (MGI:6272426|PMID:29955025) UniProt PMID:29955025 MGI:6272426 NCBI chrNW_004937318:2,623...3,622 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Peli1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:8,985,074...9,040,863
Ensembl chrNW_004936491:8,985,074...9,041,244 		JBrowse link
G Pias4 protein inhibitor of activated STAT 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,287,941...2,302,875
Ensembl chrNW_004936588:2,287,996...2,302,691 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,492,032...3,502,738
Ensembl chrNW_004936664:3,491,920...3,504,667 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:23115235) UniProt PMID:23115235 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Skp2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:5,635,856...5,664,057
Ensembl chrNW_004936518:5,637,331...5,664,778 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Trrap transformation/transcription domain associated protein involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chrNW_004936750:1,245,926...1,360,226
Ensembl chrNW_004936750:1,248,320...1,359,473 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,381,454...1,395,319
Ensembl chrNW_004936580:1,381,440...1,395,332 		JBrowse link
G Was WASP actin nucleation promoting factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:634,685...641,248
Ensembl chrNW_004936721:634,706...641,082 		JBrowse link
G Wdr48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,307,913...28,351,727
Ensembl chrNW_004936473:28,307,875...28,354,279 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Yeats4 YEATS domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,179,806...7,205,600
Ensembl chrNW_004936545:7,179,723...7,206,691 		JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,928,172...1,983,983
Ensembl chrNW_004936599:1,928,145...1,984,008 		JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:596,949...602,959
Ensembl chrNW_004936886:595,782...604,286 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G LOC101967900 lysine-specific demethylase 4D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
Ensembl		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936674:53,200...73,042 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997 		JBrowse link
G Shld1 shieldin complex subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:13,179,218...13,267,980
Ensembl chrNW_004936485:13,176,426...13,267,953 		JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:5,315,297...5,400,752
Ensembl chrNW_004936601:5,315,261...5,396,301 		JBrowse link
G Shld3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Top2b DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chrNW_004936473:17,146,576...17,189,589
Ensembl chrNW_004936473:17,143,894...17,189,605 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbh1 F-box DNA helicase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23361013) MGI
Ensembl		 PMID:23361013 GO_REF:0000107 NCBI chrNW_004936484:8,635,752...8,689,949
Ensembl chrNW_004936484:8,635,753...8,689,971 		JBrowse link
G Mtch2 mitochondrial carrier 2 acts_upstream_of_or_within ISO (PMID:26219591) MGI PMID:26219591 NCBI chrNW_004936562:1,622,341...1,644,191 JBrowse link
G Nacc2 NACC family member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936669:1,670,798...1,703,757
Ensembl chrNW_004936669:1,670,423...1,703,781 		JBrowse link
G Pias4 protein inhibitor of activated STAT 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16816390) Ensembl
MGI		 PMID:16816390 GO_REF:0000107 NCBI chrNW_004936588:2,287,941...2,302,875
Ensembl chrNW_004936588:2,287,996...2,302,691 		JBrowse link
G Plscr1 phospholipid scramblase 1 acts_upstream_of_or_within ISO (PMID:12509439) MGI PMID:12509439 NCBI chrNW_004936519:8,759,702...8,790,823 JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936599:2,348,869...2,353,907
Ensembl chrNW_004936599:2,345,646...2,354,029 		JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Skil SKI like proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10811619) Ensembl
MGI		 PMID:10811619 GO_REF:0000107 NCBI chrNW_004936593:2,109,414...2,132,871
Ensembl chrNW_004936593:2,109,223...2,132,882 		JBrowse link
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpl26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,603,913...1,609,125
Ensembl chrNW_004936595:1,603,413...1,609,132 		JBrowse link
G Steap3 STEAP3 metalloreductase acts_upstream_of_or_within ISO (PMID:18617898) MGI PMID:18617898 NCBI chrNW_004936469:51,084,250...51,121,738
Ensembl chrNW_004936469:51,054,517...51,126,664 		JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:15983387) MGI PMID:15983387 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464 		JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:562,038...567,709
Ensembl chrNW_004936629:562,022...567,822 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
positive regulation of mitotic DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map3k20 mitogen-activated protein kinase kinase kinase 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:3,029,942...3,203,319
Ensembl chrNW_004936509:3,029,979...3,202,796 		JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
positive regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936556:678,073...681,157
Ensembl chrNW_004936556:677,944...681,147 		JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936517:9,632,870...9,649,525
Ensembl chrNW_004936517:9,632,870...9,649,527 		JBrowse link
G Ino80d INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,405,056...2,474,798
Ensembl chrNW_004936631:2,410,300...2,474,811 		JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,463,592...12,472,271
Ensembl chrNW_004936501:12,463,520...12,472,257 		JBrowse link
G Mcrs1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389
Ensembl chrNW_004936512:7,276,584...7,287,427 		JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:2,435,875...2,468,848
Ensembl chrNW_004936572:2,435,847...2,471,655 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
postreplication repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca1 BRCA1 DNA repair associated involved_in ISO (PMID:17349954) HGNC-UCL PMID:17349954 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G LOC101977921 ubiquitin-conjugating enzyme E2 variant 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:4,382,428...4,405,151 JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628020) Ensembl
MGI		 PMID:7628020 GO_REF:0000107 NCBI chrNW_004936508:4,943,987...5,013,356
Ensembl chrNW_004936508:4,944,007...5,013,356 		JBrowse link
G Polh DNA polymerase eta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10871396) Ensembl
MGI
UniProt		 PMID:10871396 GO_REF:0000107 GO_REF:0000117 NCBI chrNW_004936476:16,400,026...16,434,538
Ensembl chrNW_004936476:16,401,517...16,429,287 		JBrowse link
G Rad18 RAD18 E3 ubiquitin protein ligase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936602:4,030,353...4,134,119
Ensembl chrNW_004936602:4,030,459...4,081,931 		JBrowse link
G Ube2b ubiquitin conjugating enzyme E2 B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936647:891,357...913,963
Ensembl chrNW_004936647:891,996...911,033 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in IEA TreeGrafter GO_REF:0000118
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
protection from non-homologous end joining at telomere term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acd ACD shelterin complex subunit and telomerase recruitment factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,049,134...18,052,123
Ensembl chrNW_004936475:18,045,662...18,052,172 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936690:2,293,740...2,353,450
Ensembl chrNW_004936690:2,265,849...2,274,199
Ensembl chrNW_004936690:2,265,849...2,274,199 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Terf2 telomeric repeat binding factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15968270) InterPro
MGI
TreeGrafter
Ensembl		 PMID:15968270 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936475:19,469,501...19,498,494
Ensembl chrNW_004936475:19,468,702...19,498,793 		JBrowse link
G Terf2ip TERF2 interacting protein NOT|involved_in ISO
IEA		 (MGI:4440768|PMID:20339076), (MGI:4839412|PMID:20622869) UniProt
Ensembl		 PMID:20339076 PMID:20622869 GO_REF:0000107 MGI:4440768 MGI:4839412 NCBI chrNW_004936475:24,312,140...24,319,492
Ensembl chrNW_004936475:24,312,101...24,320,543 		JBrowse link
protein-DNA covalent cross-linking repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:3,001,445...3,139,538
Ensembl chrNW_004936490:3,003,484...3,137,479 		JBrowse link
G Fam111a FAM111 trypsin like peptidase A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:3,482,649...3,488,331
Ensembl chrNW_004936581:3,480,412...3,490,195 		JBrowse link
G Gcna germ cell nuclear acidic peptidase involved_in ISO (PMID:30914427) UniProt PMID:30914427 NCBI chrNW_004936762:71,719...96,816 JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936798:261,566...284,480
Ensembl chrNW_004936798:261,661...273,011 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Tex264 testis expressed 264, ER-phagy receptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936529:3,008,355...3,039,537
Ensembl chrNW_004936529:3,008,056...3,039,562 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Vcpip1 valosin containing protein interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:7,352,043...7,376,023
Ensembl chrNW_004936496:7,352,018...7,376,964 		JBrowse link
pyrimidine dimer repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddb2 damage specific DNA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15558025) Ensembl
MGI		 PMID:15558025 GO_REF:0000107 NCBI chrNW_004936562:1,960,406...1,974,809
Ensembl chrNW_004936562:1,960,406...1,974,867 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9150142) Ensembl
MGI		 PMID:9150142 GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Polb DNA polymerase beta ISO RGD PMID:12388548 RGD:633643 NCBI chrNW_004936785:324,655...350,496
Ensembl chrNW_004936785:323,941...350,539 		JBrowse link
G Polh DNA polymerase eta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10871396) Ensembl
MGI		 PMID:10871396 GO_REF:0000107 NCBI chrNW_004936476:16,400,026...16,434,538
Ensembl chrNW_004936476:16,401,517...16,429,287 		JBrowse link
pyrimidine dimer repair by nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10454634) Ensembl
MGI		 PMID:10454634 GO_REF:0000107 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12660172) Ensembl
MGI		 PMID:12660172 GO_REF:0000107 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17049932) Ensembl
MGI		 PMID:17049932 GO_REF:0000107 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
recombinational interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936485:13,072,791...13,108,392
Ensembl chrNW_004936485:13,072,600...13,108,411 		JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:23401855)
(MGI:5525985|PMID:23401855)		 UniProt PMID:23401855 MGI:5525985 NCBI chrNW_004936658:1,657,226...1,734,150 JBrowse link
recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hrob homologous recombination factor with OB-fold involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936541:619,120...633,590
Ensembl chrNW_004936541:620,754...633,499 		JBrowse link
G Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936606:3,201,540...3,208,019
Ensembl chrNW_004936606:3,201,504...3,208,342 		JBrowse link
G Zgrf1 zinc finger GRF-type containing 1 involved_in ISO (PMID:32640219) UniProt PMID:32640219 NCBI chrNW_004936563:3,372,603...3,455,123 JBrowse link
regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
regulation of DNA damage checkpoint term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Cul4a cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19481525) Ensembl
MGI		 PMID:19481525 GO_REF:0000107 NCBI chrNW_004936472:409,083...432,442
Ensembl chrNW_004936472:408,659...432,379 		JBrowse link
G Etaa1 ETAA1 activator of ATR kinase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:11,962,161...11,975,164
Ensembl chrNW_004936491:11,962,087...11,979,349 		JBrowse link
G Fbxo4 F-box protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21911473) Ensembl
MGI		 PMID:21911473 GO_REF:0000107 NCBI chrNW_004936518:855,304...873,927
Ensembl chrNW_004936518:854,721...874,018 		JBrowse link
G Fem1b fem-1 homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:28,115,873...28,135,834
Ensembl chrNW_004936471:28,115,684...28,135,825 		JBrowse link
G Nek1 NIMA related kinase 1 involved_in ISO (MGI:5619475|PMID:18843199) CACAO PMID:18843199 MGI:5619475 NCBI chrNW_004936516:1,508,800...1,666,841
Ensembl chrNW_004936516:1,508,811...1,666,869 		JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:23,544,974...23,586,716
Ensembl chrNW_004936475:23,544,953...23,586,740 		JBrowse link
G Rnaseh2b ribonuclease H2 subunit B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22802351) Ensembl
MGI		 PMID:22802351 GO_REF:0000107 NCBI chrNW_004936565:3,791,305...3,839,991
Ensembl chrNW_004936565:3,791,329...3,840,016 		JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Wdr76 WD repeat domain 76 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:6,878,350...6,923,951
Ensembl chrNW_004936471:6,878,584...6,923,921 		JBrowse link
regulation of DNA damage response, signal transduction by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kmt5a lysine methyltransferase 5A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:1,346,040...1,366,601 JBrowse link
G Npm1 nucleophosmin 1 acts_upstream_of_or_within ISO (PMID:16199867) MGI PMID:16199867 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Smyd2 SET and MYND domain containing 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:3,917,898...3,965,382
Ensembl chrNW_004936628:3,918,230...3,965,387 		JBrowse link
G Tp53 tumor protein p53 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133) Ensembl
MGI		 PMID:21522133 GO_REF:0000107 NCBI chrNW_004936595:919,807...935,367
Ensembl chrNW_004936595:919,428...925,425 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21522133)
(PMID:16079796)		 Ensembl
MGI		 PMID:16079796 PMID:21522133 GO_REF:0000107 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cops3 COP9 signalosome subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936741:905,593...931,148
Ensembl chrNW_004936741:905,252...931,408 		JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:4,318,256...4,346,438
Ensembl chrNW_004936545:4,318,227...4,346,525 		JBrowse link
regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Cdk9 cyclin dependent kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:15,446,864...15,450,750
Ensembl chrNW_004936487:15,446,858...15,452,796 		JBrowse link
G Ier3 immediate early response 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20467439) Ensembl
MGI		 PMID:20467439 GO_REF:0000107 NCBI chrNW_004936837:401,475...402,769
Ensembl chrNW_004936837:401,524...402,741 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936556:678,073...681,157
Ensembl chrNW_004936556:677,944...681,147 		JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936517:9,632,870...9,649,525
Ensembl chrNW_004936517:9,632,870...9,649,527 		JBrowse link
G Ino80d INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,405,056...2,474,798
Ensembl chrNW_004936631:2,410,300...2,474,811 		JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,463,592...12,472,271
Ensembl chrNW_004936501:12,463,520...12,472,257 		JBrowse link
G Mcrs1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389
Ensembl chrNW_004936512:7,276,584...7,287,427 		JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:2,435,875...2,468,848
Ensembl chrNW_004936572:2,435,847...2,471,655 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936728:428,028...538,413
Ensembl chrNW_004936728:428,028...541,530 		JBrowse link
G Phf13 PHD finger protein 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936623:1,364,422...1,372,226
Ensembl chrNW_004936623:1,366,401...1,372,222 		JBrowse link
G Radx RPA1 related single stranded DNA binding protein, X-linked involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936499:8,058,973...8,122,332
Ensembl chrNW_004936499:8,058,972...8,122,287 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Sgf29 SAGA complex associated factor 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,008,601...12,024,113
Ensembl chrNW_004936501:12,008,425...12,028,239 		JBrowse link
G Sirt7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:5,418,331...5,425,050
Ensembl chrNW_004936594:5,418,796...5,424,988 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:23695662) MGI PMID:23695662 NCBI chrNW_004936721:646,778...661,144
Ensembl chrNW_004936721:646,772...661,091 		JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Usp1 ubiquitin specific peptidase 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936692:147,699...159,921
Ensembl chrNW_004936692:148,116...159,170 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dek DEK proto-oncogene acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21653549) MGI
TreeGrafter
Ensembl		 PMID:21653549 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936552:3,964,515...3,997,318
Ensembl chrNW_004936552:3,966,198...3,993,113 		JBrowse link
G Pml PML nuclear body scaffold involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,135,186...33,173,218
Ensembl chrNW_004936471:33,135,164...33,177,666 		JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,407,968...12,416,057
Ensembl chrNW_004936501:12,407,920...12,416,108 		JBrowse link
G Ppp4r2 protein phosphatase 4 regulatory subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:3,994,594...4,041,972
Ensembl chrNW_004936603:3,987,275...4,041,991 		JBrowse link
G Ppp4r3b protein phosphatase 4 regulatory subunit 3B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:1,917,559...1,981,954
Ensembl chrNW_004936491:1,918,637...1,981,954 		JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Fignl1 fidgetin like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936686:1,412,544...1,415,939
Ensembl chrNW_004936686:1,413,218...1,415,248 		JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24217620) MGI
Ensembl		 PMID:24217620 GO_REF:0000107 NCBI chrNW_004936474:8,262,913...8,319,089
Ensembl chrNW_004936474:8,262,885...8,319,092 		JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,407,968...12,416,057
Ensembl chrNW_004936501:12,407,920...12,416,108 		JBrowse link
G Ppp4r2 protein phosphatase 4 regulatory subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:3,994,594...4,041,972
Ensembl chrNW_004936603:3,987,275...4,041,991 		JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:23754376) UniProt PMID:23754376 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rpa2 replication protein A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,127,026...12,147,120
Ensembl chrNW_004936474:12,126,245...12,147,130 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936601:5,315,297...5,400,752
Ensembl chrNW_004936601:5,315,261...5,396,301 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Terf2ip TERF2 interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:24,312,140...24,319,492
Ensembl chrNW_004936475:24,312,101...24,320,543 		JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18283110) InterPro
MGI
TreeGrafter		 PMID:18283110 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004936792:668,290...727,197
Ensembl chrNW_004936792:668,290...686,241 		JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:1,115,524...1,119,083
Ensembl chrNW_004936819:1,116,447...1,118,558 		JBrowse link
G Znf365 zinc finger protein 365 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936614:833,665...853,547
Ensembl chrNW_004936614:835,866...853,547 		JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004936491:9,980,228...10,021,417
Ensembl chrNW_004936491:9,979,427...10,022,043 		JBrowse link
G Dek DEK proto-oncogene involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21653549) Ensembl
MGI		 PMID:21653549 GO_REF:0000107 NCBI chrNW_004936552:3,964,515...3,997,318
Ensembl chrNW_004936552:3,966,198...3,993,113 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chrNW_004936739:926,678...955,024 JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23241889) Ensembl
MGI		 PMID:23241889 GO_REF:0000107 NCBI chrNW_004936477:21,460,442...21,531,563
Ensembl chrNW_004936477:21,460,478...21,534,909 		JBrowse link
G Pot1 protection of telomeres 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:836,824...919,099
Ensembl chrNW_004936605:836,769...920,201 		JBrowse link
G Shld1 shieldin complex subunit 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936485:13,179,218...13,267,980
Ensembl chrNW_004936485:13,176,426...13,267,953 		JBrowse link
G Usp51 ubiquitin specific peptidase 51 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936819:1,115,524...1,119,083
Ensembl chrNW_004936819:1,116,447...1,118,558 		JBrowse link
G Was WASP actin nucleation promoting factor NOT|involved_in ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004936721:634,685...641,248
Ensembl chrNW_004936721:634,706...641,082 		JBrowse link
regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnrnpk heterogeneous nuclear ribonucleoprotein K involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20673990) Ensembl
MGI		 PMID:20673990 GO_REF:0000107 NCBI chrNW_004936828:827,660...839,088
Ensembl chrNW_004936828:828,837...838,720 		JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:7,155,963...7,242,466
Ensembl chrNW_004936541:7,211,985...7,242,470 		JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul4a cullin 4A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19481525) Ensembl
MGI		 PMID:19481525 GO_REF:0000107 NCBI chrNW_004936472:409,083...432,442
Ensembl chrNW_004936472:408,659...432,379 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:3807115 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,775,224...11,805,489
Ensembl chrNW_004936490:11,772,046...11,805,759 		JBrowse link
G Rad52 RAD52 homolog, DNA repair protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19506022) MGI
Ensembl		 PMID:19506022 GO_REF:0000107 NCBI chrNW_004936606:1,070,336...1,099,684
Ensembl chrNW_004936606:1,066,905...1,099,703 		JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:25378300) MGI PMID:25378300 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
replication-born double-strand break repair via sister chromatid exchange term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25597246) MGI PMID:25597246 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) TreeGrafter
MGI		 PMID:25520194 GO_REF:0000118 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450 		JBrowse link
G Rad21 RAD21 cohesin complex component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936470:29,377,793...29,403,422
Ensembl chrNW_004936470:29,377,734...29,407,312 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:17,413,006...17,435,951
Ensembl chrNW_004936485:17,413,006...17,435,951 		JBrowse link
G Rad51 RAD51 recombinase acts_upstream_of_or_within ISO (PMID:22778135) MGI PMID:22778135 NCBI chrNW_004936471:4,119,020...4,136,811
Ensembl chrNW_004936471:4,114,530...4,136,248 		JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936722:369,366...375,243
Ensembl chrNW_004936722:369,423...375,243 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) Ensembl
MGI		 PMID:25520194 GO_REF:0000107 NCBI chrNW_004936594:829,296...862,615
Ensembl chrNW_004936594:828,475...862,912 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
signal transduction in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:17,690,206...17,819,619
Ensembl chrNW_004936487:17,690,968...17,819,669 		JBrowse link
G Atad5 ATPase family AAA domain containing 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15983387) Ensembl
MGI		 PMID:15983387 GO_REF:0000107 NCBI chrNW_004936538:2,815,370...2,877,084
Ensembl chrNW_004936538:2,811,174...2,874,113 		JBrowse link
G Atm ATM serine/threonine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:359,134...534,672
Ensembl chrNW_004936551:359,362...532,211 		JBrowse link
G Casp9 caspase 9 involved_in ISO (PMID:15657060) UniProt PMID:15657060 NCBI chrNW_004936474:3,178,097...3,196,130 JBrowse link
G Chek1 checkpoint kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:11278490 GO_REF:0000107 RGD:2316109 NCBI chrNW_004936743:2,004,535...2,027,287
Ensembl chrNW_004936743:2,005,851...2,026,587 		JBrowse link
G Chek2 checkpoint kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:14744935) MGI
Ensembl		 PMID:14744935 GO_REF:0000107 NCBI chrNW_004936657:2,805,947...2,848,180
Ensembl chrNW_004936657:2,805,959...2,848,180 		JBrowse link
G Cry1 cryptochrome circadian regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:7,929,138...7,994,797
Ensembl chrNW_004936492:7,929,138...7,995,579 		JBrowse link
G Gadd45a growth arrest and DNA damage inducible alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936591:3,998,359...4,001,491
Ensembl chrNW_004936591:3,998,340...4,001,830 		JBrowse link
G Grb2 growth factor receptor bound protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:592,760...661,369
Ensembl chrNW_004936594:592,740...661,369 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:23,237,762...23,310,211
Ensembl chrNW_004936476:23,237,277...23,310,232 		JBrowse link
G Mapk3 mitogen-activated protein kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,342,670...12,390,650
Ensembl chrNW_004936501:12,384,804...12,392,180 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (MGI:3835231|PMID:19015238) UniProt PMID:19015238 MGI:3835231 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Wnt1 Wnt family member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,781,001...6,785,358
Ensembl chrNW_004936512:6,780,882...6,785,358 		JBrowse link
single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:12,857,928...12,961,709
Ensembl chrNW_004936491:12,857,785...12,962,376 		JBrowse link
G Aptx aprataxin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:1,569,610...1,582,103
Ensembl chrNW_004936524:1,570,627...1,576,329 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Lig4 DNA ligase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:3,861,833...3,867,943
Ensembl chrNW_004936472:3,861,866...3,867,933 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17914460), (PMID:17948061) Ensembl
MGI		 PMID:17914460 PMID:17948061 GO_REF:0000107 NCBI chrNW_004936488:17,237,002...17,311,325
Ensembl chrNW_004936488:17,236,703...17,311,310 		JBrowse link
G Tnp1 transition protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936586:504,864...505,447
Ensembl chrNW_004936586:504,864...505,447 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
telomere maintenance in response to DNA damage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 involved_in ISO (PMID:28216226) UniProt PMID:28216226 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Nbn nibrin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936544:3,773,828...3,812,673
Ensembl chrNW_004936544:3,775,220...3,808,837 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha involved_in ISO (PMID:28216226) UniProt PMID:28216226 NCBI chrNW_004936599:2,345,982...2,348,494
Ensembl chrNW_004936599:2,344,552...2,348,494 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997 		JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,920,979...10,954,483
Ensembl chrNW_004936514:10,922,322...10,954,402 		JBrowse link
telomere maintenance via base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936877:666,545...669,351
Ensembl chrNW_004936877:666,523...669,338 		JBrowse link
transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
TreeGrafter
Ensembl		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
Ensembl
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12660172) Ensembl
MGI		 PMID:12660172 GO_REF:0000107 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039 		JBrowse link
G Polr2i RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936922:130,248...131,843
Ensembl chrNW_004936922:130,257...131,828 		JBrowse link
G Rad54b RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:7,375,566...7,475,319
Ensembl chrNW_004936544:7,373,508...7,475,353 		JBrowse link
G Rad54l RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G Uvssa UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936477:21,918,091...21,950,895
Ensembl chrNW_004936477:21,918,062...21,950,904 		JBrowse link
G Xab2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:4,670,866...4,679,888
Ensembl chrNW_004936588:4,670,841...4,679,965 		JBrowse link
translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtl denticleless E3 ubiquitin protein ligase homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,347,991...1,389,836
Ensembl chrNW_004936557:1,347,991...1,389,836 		JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO (PMID:22266823) UniProt PMID:22266823 NCBI chrNW_004936737:1,296,152...1,300,038 JBrowse link
G Pclaf PCNA clamp associated factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:24,797,291...24,812,196
Ensembl chrNW_004936471:24,797,393...24,808,227 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Poli DNA polymerase iota involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17114294) TreeGrafter
MGI		 PMID:17114294 GO_REF:0000118 NCBI chrNW_004936497:9,490,048...9,512,475
Ensembl chrNW_004936497:9,487,917...9,512,436 		JBrowse link
G Poln DNA polymerase nu involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:21,268,236...21,396,526
Ensembl chrNW_004936477:21,268,244...21,396,256 		JBrowse link
G Primpol primase and DNA directed polymerase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936554:4,536,246...4,571,000
Ensembl chrNW_004936554:4,534,970...4,569,549 		JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936679:65,852...183,820
Ensembl chrNW_004936679:65,769...222,984 		JBrowse link
G Sprtn SprT-like N-terminal domain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:19,391,685...19,402,938
Ensembl chrNW_004936484:19,391,420...19,402,944 		JBrowse link
G Vcp valosin containing protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,085,959...3,102,461
Ensembl chrNW_004936524:3,085,500...3,102,466 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) UniProt PMID:24657165 NCBI chrNW_004936495:8,212,136...8,238,876 JBrowse link
UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Cul4b cullin 4B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:9,490,717...9,535,998
Ensembl chrNW_004936479:9,479,133...9,534,262 		JBrowse link
G Ddb1 damage specific DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:1,710,382...1,742,598
Ensembl chrNW_004936581:1,710,382...1,742,598 		JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936562:1,960,406...1,974,809
Ensembl chrNW_004936562:1,960,406...1,974,867 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936706:1,854,938...1,867,521
Ensembl chrNW_004936706:1,852,359...1,867,745 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G LOC101961805 histone H2A type 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937135:43,069...44,926
Ensembl chrNW_004937135:44,456...44,848 		JBrowse link
G Mc1r melanocortin 1 receptor involved_in ISO (PMID:18292087) BHF-UCL PMID:18292087 NCBI chrNW_004936641:193,885...198,730 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936524:6,467,365...6,493,556
Ensembl chrNW_004936524:6,465,104...6,493,610 		JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:118,173...139,884
Ensembl chrNW_004936602:118,188...139,675 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15975
    response to stimulus 8558
      response to stress 3659
        cellular response to stress 1844
          DNA damage response 794
            DNA repair + 493
            DNA repair-dependent chromatin remodeling 23
            SOS response 0
            broken chromosome clustering 2
            intrinsic apoptotic signaling pathway in response to DNA damage + 107
            signal transduction in response to DNA damage + 175
            telomere maintenance in response to DNA damage + 29
paths to the root