Fam168a (family with sequence similarity 168 member A) - Rat Genome Database

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Gene: Fam168a (family with sequence similarity 168 member A) Ictidomys tridecemlineatus
Analyze
Symbol: Fam168a
Name: family with sequence similarity 168 member A
RGD ID: 12527005
Description: INVOLVED IN positive regulation of base-excision repair (inferred); ASSOCIATED WITH 3-methylglutaconic aciduria type 7b (ortholog); Disease Progression (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,003,368 - 61,184,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,605,788 - 2,670,164 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,601,341 - 2,784,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fam168a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494761,003,368 - 61,184,851 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364982,605,788 - 2,670,164 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364982,601,341 - 2,784,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM168A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381173,400,487 - 73,598,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1173,400,487 - 73,598,189 (-)EnsemblGRCh38hg38GRCh38
GRCh371173,111,532 - 73,309,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,794,676 - 72,986,876 (-)NCBINCBI36Build 36hg18NCBI36
Celera1170,422,420 - 70,614,641 (-)NCBICelera
Cytogenetic Map11q13.4NCBI
HuRef1169,412,304 - 69,604,569 (-)NCBIHuRef
CHM1_11173,000,621 - 73,192,991 (-)NCBICHM1_1
T2T-CHM13v2.01173,329,624 - 73,527,246 (-)NCBIT2T-CHM13v2.0
Fam168a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,355,594 - 100,490,853 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7100,355,842 - 100,490,863 (+)EnsemblGRCm39 Ensembl
GRCm387100,706,628 - 100,841,646 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7100,706,635 - 100,841,656 (+)EnsemblGRCm38mm10GRCm38
MGSCv377107,855,216 - 107,990,160 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367100,580,789 - 100,715,733 (+)NCBIMGSCv36mm8
Celera7101,047,855 - 101,192,073 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.39NCBI
Fam168a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81164,469,447 - 164,615,542 (+)NCBIGRCr8
mRatBN7.21155,057,352 - 155,203,439 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1155,057,352 - 155,201,220 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1163,049,242 - 163,186,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01170,229,346 - 170,366,652 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01163,107,150 - 163,250,781 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01165,723,278 - 165,880,612 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1165,724,451 - 165,878,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01171,925,433 - 172,078,008 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,140,473 - 158,287,606 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11158,307,862 - 158,363,937 (+)NCBI
Celera1153,139,826 - 153,283,021 (+)NCBICelera
Cytogenetic Map1q32NCBI
Fam168a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541417,876,904 - 18,071,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541417,877,179 - 18,071,977 (+)NCBIChiLan1.0ChiLan1.0
FAM168A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2974,346,160 - 74,543,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11175,390,230 - 75,587,214 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01168,477,579 - 68,674,428 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11171,698,894 - 71,895,781 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1171,698,901 - 71,766,921 (-)Ensemblpanpan1.1panPan2
FAM168A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12124,644,700 - 24,832,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2124,768,108 - 24,827,784 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2124,410,814 - 24,596,800 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02124,851,936 - 25,038,906 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2124,852,007 - 25,038,892 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12124,645,783 - 24,832,605 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02124,846,571 - 25,033,614 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02124,761,999 - 24,948,829 (+)NCBIUU_Cfam_GSD_1.0
FAM168A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl97,852,357 - 8,071,812 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.197,852,347 - 8,072,011 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.298,516,936 - 8,534,947 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM168A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,650,781 - 64,844,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl164,647,177 - 64,844,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604361,042,747 - 61,240,522 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam168a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248173,474,230 - 3,550,714 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248173,367,402 - 3,553,275 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014503   ⟹   ENSSTOP00000012994
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,605,788 - 2,670,164 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000034567   ⟹   ENSSTOP00000025032
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,607,142 - 2,670,145 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037294   ⟹   ENSSTOP00000025848
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,607,142 - 2,670,145 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041759   ⟹   ENSSTOP00000028743
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364982,607,142 - 2,670,145 (-)Ensembl
RefSeq Acc Id: XM_005323174   ⟹   XP_005323231
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,840 (-)NCBI
SpeTri2.0NW_0049364982,601,341 - 2,784,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725078   ⟹   XP_021580753
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,842 (-)NCBI
SpeTri2.0NW_0049364982,601,341 - 2,784,444 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021725079   ⟹   XP_021580754
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,845 (-)NCBI
SpeTri2.0NW_0049364982,601,341 - 2,784,446 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040284926   ⟹   XP_040140860
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,845 (-)NCBI
RefSeq Acc Id: XM_040284927   ⟹   XP_040140861
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,847 (-)NCBI
RefSeq Acc Id: XM_040284928   ⟹   XP_040140862
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494761,003,368 - 61,184,851 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005323231   ⟸   XM_005323174
- Peptide Label: isoform X3
- UniProtKB: I3MN21 (UniProtKB/TrEMBL),   A0A287CUQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021580754   ⟸   XM_021725079
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021580753   ⟸   XM_021725078
- Peptide Label: isoform X4
- UniProtKB: A0A287CX44 (UniProtKB/TrEMBL),   A0A287CUQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140862   ⟸   XM_040284928
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040140861   ⟸   XM_040284927
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040140860   ⟸   XM_040284926
- Peptide Label: isoform X1
- UniProtKB: A0A287CUQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000025032   ⟸   ENSSTOT00000034567
RefSeq Acc Id: ENSSTOP00000012994   ⟸   ENSSTOT00000014503
RefSeq Acc Id: ENSSTOP00000025848   ⟸   ENSSTOT00000037294
RefSeq Acc Id: ENSSTOP00000028743   ⟸   ENSSTOT00000041759


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014507 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014503.3 UniProtKB/TrEMBL
  ENSSTOT00000034567.1 UniProtKB/TrEMBL
  ENSSTOT00000037294.1 UniProtKB/TrEMBL
  ENSSTOT00000041759.1 UniProtKB/TrEMBL
InterPro FAM168A/MANI UniProtKB/TrEMBL
NCBI Gene Fam168a ENTREZGENE
PANTHER PROTEIN FAM168A UniProtKB/TrEMBL
  PTHR31844 UniProtKB/TrEMBL
Pfam TCRP1 UniProtKB/TrEMBL
UniProt A0A287CUQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287CX44 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5C3_ICTTR UniProtKB/TrEMBL
  I3MN21 ENTREZGENE, UniProtKB/TrEMBL