Polk (DNA polymerase kappa) - Rat Genome Database

Name: Polk
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Polk (DNA polymerase kappa) Ictidomys tridecemlineatus

Analyze

Symbol:

Polk

Name:

DNA polymerase kappa

RGD ID:

12619109

Description:

ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA repair (ortholog); nucleotide-excision repair, DNA gap filling (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 34 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); site of DNA damage (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DNA polymerase kappa, transcript variant X1; DNA polymerase kappa, transcript variant X2; DNA polymerase kappa, transcript variant X3; DNA polymerase kappa, transcript variant X4; DNA polymerase kappa, transcript variant X5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POLK (DNA polymerase kappa)	NCBI	Ortholog
Mus musculus (house mouse):	Polk (polymerase (DNA directed), kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Polk (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Polk (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POLK (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POLK (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POLK (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POLK (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Polk (DNA polymerase kappa)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,596,918 - 189,658,957 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 34 (ISO)

epilepsy (ISO)

genetic disease (ISO)

glioblastoma (ISO)

intellectual disability (ISO)

microcephaly (ISO)

Micronuclei, Chromosome-Defective (ISO)

Neurodevelopmental Disorders (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

Sandhoff disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to UV (ISO)

DNA biosynthetic process (IEA)

DNA damage response (IEA)

DNA metabolic process (IEA)

DNA repair (IEA,ISO)

error-prone translesion synthesis (IEA)

nucleotide-excision repair, DNA gap filling (ISO)

Cellular Component

cytosol (IEA)

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IEA)

site of DNA damage (ISO)

Molecular Function

damaged DNA binding (IEA)

DNA-directed DNA polymerase activity (IEA)

molecular adaptor activity (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

nucleotide excision repair pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Polk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	189,596,918 - 189,658,957 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POLK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	75,510,774 - 75,609,991 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	75,511,845 - 75,609,991 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	74,807,716 - 74,905,816 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	74,843,337 - 74,930,889 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	74,843,336 - 74,930,889	NCBI
Celera	5	70,701,054 - 70,789,056 (+)	NCBI		Celera
Cytogenetic Map	5	q13.3	NCBI
HuRef	5	70,012,832 - 70,100,786 (+)	NCBI		HuRef
CHM1_1	5	74,240,383 - 74,328,367 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	75,992,960 - 76,091,061 (+)	NCBI		T2T-CHM13v2.0

Polk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	96,617,195 - 96,679,087 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	96,617,198 - 96,679,087 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	96,480,687 - 96,542,579 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	96,480,690 - 96,542,579 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	97,250,644 - 97,312,440 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	97,581,388 - 97,643,184 (-)	NCBI		MGSCv36	mm8
Celera	13	100,116,241 - 100,179,060 (-)	NCBI		Celera
Cytogenetic Map	13	D1	NCBI
cM Map	13	50.56	NCBI

Polk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	29,556,831 - 29,616,960 (-)	NCBI		GRCr8
mRatBN7.2	2	27,822,228 - 27,882,331 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	27,822,679 - 27,882,313 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	34,870,198 - 34,930,018 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	32,970,284 - 33,030,097 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	27,783,088 - 27,844,202 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	27,305,718 - 27,364,906 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	27,305,728 - 27,364,906 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	46,417,808 - 46,477,594 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	26,952,022 - 27,012,088 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	26,875,113 - 26,875,624 (-)	NCBI
Celera	2	23,868,651 - 23,928,707 (-)	NCBI		Celera
Cytogenetic Map	2	q12	NCBI

Polk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	25,161,222 - 25,228,524 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955425	25,164,749 - 25,228,064 (-)	NCBI	ChiLan1.0	ChiLan1.0

POLK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	39,701,845 - 39,789,856 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	37,855,476 - 37,944,159 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	39,700,659 - 39,788,727 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	40,313,114 - 40,365,841 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	40,311,526 - 40,401,003 (-)	Ensembl	panpan1.1		panPan2

POLK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	30,793,893 - 30,860,240 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	30,712,571 - 30,859,106 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	32,036,886 - 32,103,334 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	30,716,706 - 30,790,391 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	30,717,013 - 30,789,573 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	30,654,748 - 30,720,406 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	30,624,393 - 30,691,008 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	31,002,435 - 31,068,944 (-)	NCBI		UU_Cfam_GSD_1.0

POLK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	84,538,056 - 84,619,485 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	84,555,648 - 84,619,490 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	86,174,657 - 86,250,880 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POLK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	69,842,887 - 69,948,285 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	69,872,752 - 69,948,249 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	18,628,236 - 18,719,870 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Polk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624905	2,800,693 - 2,844,516 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624905	2,801,160 - 2,844,549 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040272335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005328944 ⟹ XP_005329001

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,328 - 189,658,957 (+)	NCBI
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI

Sequence:

show sequence

TCTCCCCCTATTACCCGCCCCGTACCCCTCCCGACGTCTGACGCCACACGCCAAGGGCTTGAGA
TTCCCCTCACCGAAGCGTCCTACCTCCGGCCTTCGCGGGTGACTATGGGTAGAAAGGTAGGAGG
GGCAGAGAGTGGAGAGGGCGGAATAGGGTCACCGCCGAGCTGCATTCTGGGAAGGGTGCTGCTT
GTACTGTCGCGCAGCCTCCTGGGAGTTGTAGTCACGATCCTAGTCAAGTGGTGAGTGTCTTGCG
CCAGGAAGGCTTGTCGCCTTGGGAACCGTCAAAAGGTAGATGCGCTTCGTTTGACAGTAGCGTG
GCTGACCCCCTGACCTCGCTTCTCTGTCCCTACCTAACGTGTTTATGACGAACCCTGCGGTCTT
GCGGGTCAGGAGGTGAGATAACTCTCCGTGGATGGGAAGATAAGGGTAAATTTTGAGTTTAAGG
GAAAAGACCCAGTGGCTGAAAATGCCTCTTTTTTAGTGGAGACAAGACAACTTCACTGGGATTT
TCAGGAAAAAATGGAATGATGGGAAATGTCTGTGAGAAGTACCTGTGATATCTTTTCATATCTC
CAGATTGACTCTTCTAGATGCTAAATTTTCAATAGTAAAAAAAGAAGACATTTTACATTTACAC
CATGTATAGCACAAAGGAAAAGAATGACAATGACAAAGATGATCTTCTGCTTAGGATGGGACTT
AATGATAATAAAGCAGGAATGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATGGACG
CCACAAAGGGATCCAAATATTATGGAAATGAACTCAAGAAGGAAAAACAAGTCAACCAACGAAT
TAAAAATATGATGCAACAAAAAGCTCAAATTAACAGCCAGCAACTAAGGAAAGCACAATTACAG
GTTGACAAATTTGCAATGGAATTAGAACAGGGCCGGGATTTGAACAATACCATAGTGCATGTTG
ACATGGATGCCTTCTATGCAGCTGTAGAAATGAGGGACAATCCAGAATTAAAGGATAAACCCAT
TGCTGTAGGATCAATGAGTATGTTGTCTACTTCAAATTACATTGCAAGGAGGTTTGGTGTTCGT
GCAGCCATGCCAGGATTTATTGCTAAGAGACTCTGCCCACAACTTATCATAGTGCCCCCAAACT
TTGACAAATACAGAGCTGTGAGTAAAGAGGTTAAGGAAATACTTGCTGATTATGATCCCAATTT
TATGGCTGTGAGTCTTGATGAAGCTTACTTGAATATAACCAAGCACTTACAGGAAAGACAAAAT
TGGCCTGAGGACAAAAGAAAGTATTTTGTCAAAACTGAAAATGCCATAGAAAATGATAAACCAG
AAAAGGAAGTGGATAAATTGAGTGAGCATGAACGGACCATCTCTCCACTACTTTTCGAAGATAG
TCCTCCTGATTTGCAAACCCCATGGAACTTTGAAGAACAAAACAAACCTCTACAGAATTCAGTT
GTTTTTGGAACATCAGCTGAGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAAAAAACAA
CACTGACGGCCAGTGCAGGAATTGCTCCCAATACAATGTTGGCAAAAGTTTGCAGTGACAAGAA
TAAGCCAAATGGACAATATCAAATTCTCCCCAACAGACAAGCTGTGATGGGCTTCATCAAAGAC
TTACCAATTAGGAAGGTTTCTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTTGGAA
TTATTACTTGTACAGAACTCTACCAACAGAGGGCATTACTTTCTCTCCTTTTCTCTGAAACATC
TTGGCATTATTTCCTTCACATCTCTCTGGGTCTAGGTTCAACACATCTAGCAAGGGATGGAGAA
AGGAAAAGCATGAGCGTTGAGAGGACCTTCAGTGAAATAAGTAAAGCAGAAGAACAGTACAGCT
TGTGCCAAGAACTTTGCAGTGAACTCGCGCAAGATCTCCAGAAAGAAAAGCTTAAGGGTAGAAC
TGTTACCATTAAACTGAAGAATGTGAATTTTGAAGTAAAAACTCGTGCATCTACAGTTTCATCT
GTTGTTTCTACTGCGGAAGAAATATTTGCCATCGCTAAGGAGTTGCTAAGGACAGAAATTGATG
CGGATTTTCCACGTCCCTTGAGATTAAGACTTATGGGTGTTCGGATATCTGGTTTTCCCAATGA
AGAAGACAAGAAACACCAACAAAGGAGCATCATTGGCTTCTTACAGGGTGGAAACCAAGCCCTG
TCAGTCACTGAGTGTATGCTAGAGAAAACAGACAAAGATCAGTTTGTAAAACCTCTAGAAACAT
CTCATAAGAAGAGTTTCTTTGATAAAAAACGATCAGAAAGGAAATGGAGCCACCAGGACACATC
TAAATGTGAAACTATAGTTAAAGAAAGTTTACAGATATCACAACCATTCCAAGTTTTAAAGAAG
AAGACAAGTGAGAATTTAAAAACATCAGATAATTCAGATAACTTTCAGATATTTACCTGTCCTG
TTTGCTTTAGGGAACAAAGAAGCATCAGTCTGGAAGCCTTTAATAAACATGTAGATGTGTGTCT
TGATGGACCTTCAATTAGGGAGAACTCGAAAATGAATTTTTCAAATGCTTCCTCTACTGAAGTT
AACCTGAAAGAAATCACAAAACATTCTTTTTTACTTTGTGAAAAGCAATATTATGAAACTCATC
AGAAAAATGTAGAAATCACTTCAGTAGATTGTGTAAATTTGGTAGAAACTAGAAATAATTCATC
TAAAGCAGGAAGTGTAGACACTGAGCACAGCAAGGAGGAATGTTCTAGTCTTCCAAGCAAGTCT
TGTCTTGTTTCATTGGAAAATCAAGATGCTGAGTTACTAAGTAGACAAGAACCACTCCAACCTT
GTGTGTATCAAGTGACAGCAGGCCAAGCGCTAGTTTTTCCAGTTTGTAATCTAGAACAAAAAAC
TTCAGATCTTACGCTGTTCAATGTGCACGTGGATGTTTGCTTAAATAAAGGTATTATCCAAGAA
CTGAAGAATGATAAAGTTTATCCTCTTAACCAACCCAAAGATAGCTCCAGAAGTACTGGTAGCT
CAAGCAGAGTACAGAAGACCAGAACAAAAAGGGTAGGACTAACCGCAAAGTACTCAGCATCAAA
GAAAATAAAACCGAACAATCCCAGATACACTCTTGATATATTTTTTAAATGAACATTGAATATT
TTATCATCAATTTTAATTGAAACTTCTTATTTTGTAATAAATGAAATTATTCTTTCTCATTTTA
ACTTTATAGATTCATGTAGTGAAGGCAAGTACAATAATTCCTCCCAAATGATGTTTCCTTTTCT
AAGAATTTAGAATATAGGTTAATTTATTTTTGTATTTATTTTAATTTTTTGGTACCAGGAATTG
AAC

hide sequence

RefSeq Acc Id:

XM_021728851 ⟹ XP_021584526

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,328 - 189,658,957 (+)	NCBI
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI

Sequence:

show sequence

TCTCCCCCTATTACCCGCCCCGTACCCCTCCCGACGTCTGACGCCACACGCCAAGGGCTTGAGA
TTCCCCTCACCGAAGCGTCCTACCTCCGGCCTTCGCGGGTGACTATGGGTAGAAAGGTAGGAGG
GGCAGAGAGTGGAGAGGGCGGAATAGGGTCACCGCCGAGCTGCATTCTGGGAAGGGTGCTGCTT
GTACTGTCGCGCAGCCTCCTGGGAGTTGTAGTCACGATCCTAGTCAAGTGGTGAGTGTCTTGCG
CCAGGAAGGCTTGTCGCCTTGGGAACCGTCAAAAGGTAGATGCGCTTCGTTTGACAGTAGCGTG
GCTGACCCCCTGACCTCGCTTCTCTGTCCCTACCTAACGTGTTTATGACGAACCCTGCGGTCTT
GCGGGTCAGGAGGTGAGATAACTCTCCGATAGTAAAAAAAGAAGACATTTTACATTTACACCAT
GTATAGCACAAAGGAAAAGAATGACAATGACAAAGATGATCTTCTGCTTAGGATGGGACTTAAT
GATAATAAAGCAGGAATGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATGGACGCCA
CAAAGGGATCCAAATATTATGGAAATGAACTCAAGAAGGAAAAACAAGTCAACCAACGAATTAA
AAATATGATGCAACAAAAAGCTCAAATTAACAGCCAGCAACTAAGGAAAGCACAATTACAGGTT
GACAAATTTGCAATGGAATTAGAACAGGGCCGGGATTTGAACAATACCATAGTGCATGTTGACA
TGGATGCCTTCTATGCAGCTGTAGAAATGAGGGACAATCCAGAATTAAAGGATAAACCCATTGC
TGTAGGATCAATGAGTATGTTGTCTACTTCAAATTACATTGCAAGGAGGTTTGGTGTTCGTGCA
GCCATGCCAGGATTTATTGCTAAGAGACTCTGCCCACAACTTATCATAGTGCCCCCAAACTTTG
ACAAATACAGAGCTGTGAGTAAAGAGGTTAAGGAAATACTTGCTGATTATGATCCCAATTTTAT
GGCTGTGAGTCTTGATGAAGCTTACTTGAATATAACCAAGCACTTACAGGAAAGACAAAATTGG
CCTGAGGACAAAAGAAAGTATTTTGTCAAAACTGAAAATGCCATAGAAAATGATAAACCAGAAA
AGGAAGTGGATAAATTGAGTGAGCATGAACGGACCATCTCTCCACTACTTTTCGAAGATAGTCC
TCCTGATTTGCAAACCCCATGGAACTTTGAAGAACAAAACAAACCTCTACAGAATTCAGTTGTT
TTTGGAACATCAGCTGAGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAAAAAACAACAC
TGACGGCCAGTGCAGGAATTGCTCCCAATACAATGTTGGCAAAAGTTTGCAGTGACAAGAATAA
GCCAAATGGACAATATCAAATTCTCCCCAACAGACAAGCTGTGATGGGCTTCATCAAAGACTTA
CCAATTAGGAAGGTTTCTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTTGGAATTA
TTACTTGTACAGAACTCTACCAACAGAGGGCATTACTTTCTCTCCTTTTCTCTGAAACATCTTG
GCATTATTTCCTTCACATCTCTCTGGGTCTAGGTTCAACACATCTAGCAAGGGATGGAGAAAGG
AAAAGCATGAGCGTTGAGAGGACCTTCAGTGAAATAAGTAAAGCAGAAGAACAGTACAGCTTGT
GCCAAGAACTTTGCAGTGAACTCGCGCAAGATCTCCAGAAAGAAAAGCTTAAGGGTAGAACTGT
TACCATTAAACTGAAGAATGTGAATTTTGAAGTAAAAACTCGTGCATCTACAGTTTCATCTGTT
GTTTCTACTGCGGAAGAAATATTTGCCATCGCTAAGGAGTTGCTAAGGACAGAAATTGATGCGG
ATTTTCCACGTCCCTTGAGATTAAGACTTATGGGTGTTCGGATATCTGGTTTTCCCAATGAAGA
AGACAAGAAACACCAACAAAGGAGCATCATTGGCTTCTTACAGGGTGGAAACCAAGCCCTGTCA
GTCACTGAGTGTATGCTAGAGAAAACAGACAAAGATCAGTTTGTAAAACCTCTAGAAACATCTC
ATAAGAAGAGTTTCTTTGATAAAAAACGATCAGAAAGGAAATGGAGCCACCAGGACACATCTAA
ATGTGAAACTATAGTTAAAGAAAGTTTACAGATATCACAACCATTCCAAGTTTTAAAGAAGAAG
ACAAGTGAGAATTTAAAAACATCAGATAATTCAGATAACTTTCAGATATTTACCTGTCCTGTTT
GCTTTAGGGAACAAAGAAGCATCAGTCTGGAAGCCTTTAATAAACATGTAGATGTGTGTCTTGA
TGGACCTTCAATTAGGGAGAACTCGAAAATGAATTTTTCAAATGCTTCCTCTACTGAAGTTAAC
CTGAAAGAAATCACAAAACATTCTTTTTTACTTTGTGAAAAGCAATATTATGAAACTCATCAGA
AAAATGTAGAAATCACTTCAGTAGATTGTGTAAATTTGGTAGAAACTAGAAATAATTCATCTAA
AGCAGGAAGTGTAGACACTGAGCACAGCAAGGAGGAATGTTCTAGTCTTCCAAGCAAGTCTTGT
CTTGTTTCATTGGAAAATCAAGATGCTGAGTTACTAAGTAGACAAGAACCACTCCAACCTTGTG
TGTATCAAGTGACAGCAGGCCAAGCGCTAGTTTTTCCAGTTTGTAATCTAGAACAAAAAACTTC
AGATCTTACGCTGTTCAATGTGCACGTGGATGTTTGCTTAAATAAAGGTATTATCCAAGAACTG
AAGAATGATAAAGTTTATCCTCTTAACCAACCCAAAGATAGCTCCAGAAGTACTGGTAGCTCAA
GCAGAGTACAGAAGACCAGAACAAAAAGGGTAGGACTAACCGCAAAGTACTCAGCATCAAAGAA
AATAAAACCGAACAATCCCAGATACACTCTTGATATATTTTTTAAATGAACATTGAATATTTTA
TCATCAATTTTAATTGAAACTTCTTATTTTGTAATAAATGAAATTATTCTTTCTCATTTTAACT
TTATAGATTCATGTAGTGAAGGCAAGTACAATAATTCCTCCCAAATGATGTTTCCTTTTCTAAG
AATTTAGAATATAGGTTAATTTATTTTTGTATTTATTTTAATTTTTTGGTACCAGGAATTGAAC

hide sequence

RefSeq Acc Id:

XM_021728852 ⟹ XP_021584527

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,328 - 189,658,957 (+)	NCBI
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI

Sequence:

show sequence

TCTCCCCCTATTACCCGCCCCGTACCCCTCCCGACGTCTGACGCCACACGCCAAGGGCTTGAGA
TTCCCCTCACCGAAGCGTCCTACCTCCGGCCTTCGCGGGTGACTATGGGTAGAAAGGTAGGAGG
GGCAGAGAGTGGAGAGGGCGGAATAGGGTCACCGCCGAGCTGCATTCTGGGAAGGGTGCTGCTT
GTACTGTCGCGCAGCCTCCTGGGAGTTGTAGTCACGATCCTAGTCAAGTGGTGAGTGTCTTGCG
CCAGGAAGGCTTGTCGCCTTGGGAACCGTCAAAAGGTAGATGCGCTTCGTTTGACAGTAGCGTG
GCTGACCCCCTGACCTCGCTTCTCTGTCCCTACCTAACGTGTTTATGACGAACCCTGCGGTCTT
GCGGGTCAGGAGTGGATGGGAAGATAAGGGTAAATTTTGAGTTTAAGGGAAAAGACCCAGTGGC
TGAAAATGCCTCTTTTTTAGTGGAGACAAGACAACTTCACTGGGATTTTCAGGAAAAAATGGAA
TGATGGGAAATGTCTGTGAGAAGTACCTGTGATATCTTTTCATATCTCCAGATTGACTCTTCTA
GATGCTAAATTTTCAATAGTAAAAAAAGAAGACATTTTACATTTACACCATGTATAGCACAAAG
GAAAAGAATGACAATGACAAAGATGATCTTCTGCTTAGGATGGGACTTAATGATAATAAAGCAG
GAATGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATGGACGCCACAAAGGGATCCAA
ATATTATGGAAATGAACTCAAGAAGGAAAAACAAGTCAACCAACGAATTAAAAATATGATGCAA
CAAAAAGCTCAAATTAACAGCCAGCAACTAAGGAAAGCACAATTACAGGTTGACAAATTTGCAA
TGGAATTAGAACAGGGCCGGGATTTGAACAATACCATAGTGCATGTTGACATGGATGCCTTCTA
TGCAGCTGTAGAAATGAGGGACAATCCAGAATTAAAGGATAAACCCATTGCTGTAGGATCAATG
AGTATGTTGTCTACTTCAAATTACATTGCAAGGAGGTTTGGTGTTCGTGCAGCCATGCCAGGAT
TTATTGCTAAGAGACTCTGCCCACAACTTATCATAGTGCCCCCAAACTTTGACAAATACAGAGC
TGTGAGTAAAGAGGTTAAGGAAATACTTGCTGATTATGATCCCAATTTTATGGCTGTGAGTCTT
GATGAAGCTTACTTGAATATAACCAAGCACTTACAGGAAAGACAAAATTGGCCTGAGGACAAAA
GAAAGTATTTTGTCAAAACTGAAAATGCCATAGAAAATGATAAACCAGAAAAGGAAGTGGATAA
ATTGAGTGAGCATGAACGGACCATCTCTCCACTACTTTTCGAAGATAGTCCTCCTGATTTGCAA
ACCCCATGGAACTTTGAAGAACAAAACAAACCTCTACAGAATTCAGTTGTTTTTGGAACATCAG
CTGAGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAAAAAACAACACTGACGGCCAGTGC
AGGAATTGCTCCCAATACAATGTTGGCAAAAGTTTGCAGTGACAAGAATAAGCCAAATGGACAA
TATCAAATTCTCCCCAACAGACAAGCTGTGATGGGCTTCATCAAAGACTTACCAATTAGGAAGG
TTTCTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTTGGAATTATTACTTGTACAGA
ACTCTACCAACAGAGGGCATTACTTTCTCTCCTTTTCTCTGAAACATCTTGGCATTATTTCCTT
CACATCTCTCTGGGTCTAGGTTCAACACATCTAGCAAGGGATGGAGAAAGGAAAAGCATGAGCG
TTGAGAGGACCTTCAGTGAAATAAGTAAAGCAGAAGAACAGTACAGCTTGTGCCAAGAACTTTG
CAGTGAACTCGCGCAAGATCTCCAGAAAGAAAAGCTTAAGGGTAGAACTGTTACCATTAAACTG
AAGAATGTGAATTTTGAAGTAAAAACTCGTGCATCTACAGTTTCATCTGTTGTTTCTACTGCGG
AAGAAATATTTGCCATCGCTAAGGAGTTGCTAAGGACAGAAATTGATGCGGATTTTCCACGTCC
CTTGAGATTAAGACTTATGGGTGTTCGGATATCTGGTTTTCCCAATGAAGAAGACAAGAAACAC
CAACAAAGGAGCATCATTGGCTTCTTACAGGGTGGAAACCAAGCCCTGTCAGTCACTGAGTGTA
TGCTAGAGAAAACAGACAAAGATCAGTTTGTAAAACCTCTAGAAACATCTCATAAGAAGAGTTT
CTTTGATAAAAAACGATCAGAAAGGAAATGGAGCCACCAGGACACATCTAAATGTGAAACTATA
GTTAAAGAAAGTTTACAGATATCACAACCATTCCAAGTTTTAAAGAAGAAGACAAGTGAGAATT
TAAAAACATCAGATAATTCAGATAACTTTCAGATATTTACCTGTCCTGTTTGCTTTAGGGAACA
AAGAAGCATCAGTCTGGAAGCCTTTAATAAACATGTAGATGTGTGTCTTGATGGACCTTCAATT
AGGGAGAACTCGAAAATGAATTTTTCAAATGCTTCCTCTACTGAAGTTAACCTGAAAGAAATCA
CAAAACATTCTTTTTTACTTTGTGAAAAGCAATATTATGAAACTCATCAGAAAAATGTAGAAAT
CACTTCAGTAGATTGTGTAAATTTGGTAGAAACTAGAAATAATTCATCTAAAGCAGGAAGTGTA
GACACTGAGCACAGCAAGGAGGAATGTTCTAGTCTTCCAAGCAAGTCTTGTCTTGTTTCATTGG
AAAATCAAGATGCTGAGTTACTAAGTAGACAAGAACCACTCCAACCTTGTGTGTATCAAGTGAC
AGCAGGCCAAGCGCTAGTTTTTCCAGTTTGTAATCTAGAACAAAAAACTTCAGATCTTACGCTG
TTCAATGTGCACGTGGATGTTTGCTTAAATAAAGGTATTATCCAAGAACTGAAGAATGATAAAG
TTTATCCTCTTAACCAACCCAAAGATAGCTCCAGAAGTACTGGTAGCTCAAGCAGAGTACAGAA
GACCAGAACAAAAAGGGTAGGACTAACCGCAAAGTACTCAGCATCAAAGAAAATAAAACCGAAC
AATCCCAGATACACTCTTGATATATTTTTTAAATGAACATTGAATATTTTATCATCAATTTTAA
TTGAAACTTCTTATTTTGTAATAAATGAAATTATTCTTTCTCATTTTAACTTTATAGATTCATG
TAGTGAAGGCAAGTACAATAATTCCTCCCAAATGATGTTTCCTTTTCTAAGAATTTAGAATATA
GGTTAATTTATTTTTGTATTTATTTTAATTTTTTGGTACCAGGAATTGAAC

hide sequence

RefSeq Acc Id:

XM_021728853 ⟹ XP_021584528

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,328 - 189,658,957 (+)	NCBI
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI

Sequence:

show sequence

TCTCCCCCTATTACCCGCCCCGTACCCCTCCCGACGTCTGACGCCACACGCCAAGGGCTTGAGA
TTCCCCTCACCGAAGCGTCCTACCTCCGGCCTTCGCGGGTGACTATGGGTAGAAAGGTAGGAGG
GGCAGAGAGTGGAGAGGGCGGAATAGGGTCACCGCCGAGCTGCATTCTGGGAAGGGTGCTGCTT
GTACTGTCGCGCAGCCTCCTGGGAGTTGTAGTCACGATCCTAGTCAAGTGGTGAGTGTCTTGCG
CCAGGAAGGCTTGTCGCCTTGGGAACCGTCAAAAGGTAGATGCGCTTCGTTTGACAGTAGCGTG
GCTGACCCCCTGACCTCGCTTCTCTGTCCCTACCTAACGTGTTTATGACGAACCCTGCGGTCTT
GCGGGTCAGGAGATAGTAAAAAAAGAAGACATTTTACATTTACACCATGTATAGCACAAAGGAA
AAGAATGACAATGACAAAGATGATCTTCTGCTTAGGATGGGACTTAATGATAATAAAGCAGGAA
TGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATGGACGCCACAAAGGGATCCAAATA
TTATGGAAATGAACTCAAGAAGGAAAAACAAGTCAACCAACGAATTAAAAATATGATGCAACAA
AAAGCTCAAATTAACAGCCAGCAACTAAGGAAAGCACAATTACAGGTTGACAAATTTGCAATGG
AATTAGAACAGGGCCGGGATTTGAACAATACCATAGTGCATGTTGACATGGATGCCTTCTATGC
AGCTGTAGAAATGAGGGACAATCCAGAATTAAAGGATAAACCCATTGCTGTAGGATCAATGAGT
ATGTTGTCTACTTCAAATTACATTGCAAGGAGGTTTGGTGTTCGTGCAGCCATGCCAGGATTTA
TTGCTAAGAGACTCTGCCCACAACTTATCATAGTGCCCCCAAACTTTGACAAATACAGAGCTGT
GAGTAAAGAGGTTAAGGAAATACTTGCTGATTATGATCCCAATTTTATGGCTGTGAGTCTTGAT
GAAGCTTACTTGAATATAACCAAGCACTTACAGGAAAGACAAAATTGGCCTGAGGACAAAAGAA
AGTATTTTGTCAAAACTGAAAATGCCATAGAAAATGATAAACCAGAAAAGGAAGTGGATAAATT
GAGTGAGCATGAACGGACCATCTCTCCACTACTTTTCGAAGATAGTCCTCCTGATTTGCAAACC
CCATGGAACTTTGAAGAACAAAACAAACCTCTACAGAATTCAGTTGTTTTTGGAACATCAGCTG
AGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAAAAAACAACACTGACGGCCAGTGCAGG
AATTGCTCCCAATACAATGTTGGCAAAAGTTTGCAGTGACAAGAATAAGCCAAATGGACAATAT
CAAATTCTCCCCAACAGACAAGCTGTGATGGGCTTCATCAAAGACTTACCAATTAGGAAGGTTT
CTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTTGGAATTATTACTTGTACAGAACT
CTACCAACAGAGGGCATTACTTTCTCTCCTTTTCTCTGAAACATCTTGGCATTATTTCCTTCAC
ATCTCTCTGGGTCTAGGTTCAACACATCTAGCAAGGGATGGAGAAAGGAAAAGCATGAGCGTTG
AGAGGACCTTCAGTGAAATAAGTAAAGCAGAAGAACAGTACAGCTTGTGCCAAGAACTTTGCAG
TGAACTCGCGCAAGATCTCCAGAAAGAAAAGCTTAAGGGTAGAACTGTTACCATTAAACTGAAG
AATGTGAATTTTGAAGTAAAAACTCGTGCATCTACAGTTTCATCTGTTGTTTCTACTGCGGAAG
AAATATTTGCCATCGCTAAGGAGTTGCTAAGGACAGAAATTGATGCGGATTTTCCACGTCCCTT
GAGATTAAGACTTATGGGTGTTCGGATATCTGGTTTTCCCAATGAAGAAGACAAGAAACACCAA
CAAAGGAGCATCATTGGCTTCTTACAGGGTGGAAACCAAGCCCTGTCAGTCACTGAGTGTATGC
TAGAGAAAACAGACAAAGATCAGTTTGTAAAACCTCTAGAAACATCTCATAAGAAGAGTTTCTT
TGATAAAAAACGATCAGAAAGGAAATGGAGCCACCAGGACACATCTAAATGTGAAACTATAGTT
AAAGAAAGTTTACAGATATCACAACCATTCCAAGTTTTAAAGAAGAAGACAAGTGAGAATTTAA
AAACATCAGATAATTCAGATAACTTTCAGATATTTACCTGTCCTGTTTGCTTTAGGGAACAAAG
AAGCATCAGTCTGGAAGCCTTTAATAAACATGTAGATGTGTGTCTTGATGGACCTTCAATTAGG
GAGAACTCGAAAATGAATTTTTCAAATGCTTCCTCTACTGAAGTTAACCTGAAAGAAATCACAA
AACATTCTTTTTTACTTTGTGAAAAGCAATATTATGAAACTCATCAGAAAAATGTAGAAATCAC
TTCAGTAGATTGTGTAAATTTGGTAGAAACTAGAAATAATTCATCTAAAGCAGGAAGTGTAGAC
ACTGAGCACAGCAAGGAGGAATGTTCTAGTCTTCCAAGCAAGTCTTGTCTTGTTTCATTGGAAA
ATCAAGATGCTGAGTTACTAAGTAGACAAGAACCACTCCAACCTTGTGTGTATCAAGTGACAGC
AGGCCAAGCGCTAGTTTTTCCAGTTTGTAATCTAGAACAAAAAACTTCAGATCTTACGCTGTTC
AATGTGCACGTGGATGTTTGCTTAAATAAAGGTATTATCCAAGAACTGAAGAATGATAAAGTTT
ATCCTCTTAACCAACCCAAAGATAGCTCCAGAAGTACTGGTAGCTCAAGCAGAGTACAGAAGAC
CAGAACAAAAAGGGTAGGACTAACCGCAAAGTACTCAGCATCAAAGAAAATAAAACCGAACAAT
CCCAGATACACTCTTGATATATTTTTTAAATGAACATTGAATATTTTATCATCAATTTTAATTG
AAACTTCTTATTTTGTAATAAATGAAATTATTCTTTCTCATTTTAACTTTATAGATTCATGTAG
TGAAGGCAAGTACAATAATTCCTCCCAAATGATGTTTCCTTTTCTAAGAATTTAGAATATAGGT
TAATTTATTTTTGTATTTATTTTAATTTTTTGGTACCAGGAATTGAAC

hide sequence

RefSeq Acc Id:

XM_021728854 ⟹ XP_021584529

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,308 - 189,658,957 (+)	NCBI
SpeTri2.0	NW_004936549	1,199,810 - 1,261,889 (-)	NCBI

Sequence:

show sequence

TCTCCCCCTATTACCCGCCCCGTACCCCTCCCGACGTCTGACGCCACACGCCAAGGGCTTGAGA
TTCCCCTCACCGAAGCGTCCTACCTCCGGCCTTCGCGGGTGACTATGGGTAGAAAGGTAGGAGG
GGCAGAGAGTGGAGAGGGCGGAATAGGGTCACCGCCGAGCTGCATTCTGGGAAGGGTGCTGCTT
GTACTGTCGCGCAGCCTCCTGGGAGTTGTAGTCACGATCCTAGTCAAGTGGTGAGTGTCTTGCG
CCAGGAAGGCTTGTCGCCTTGGGAACCGTCAAAAGATAGTAAAAAAAGAAGACATTTTACATTT
ACACCATGTATAGCACAAAGGAAAAGAATGACAATGACAAAGATGATCTTCTGCTTAGGATGGG
ACTTAATGATAATAAAGCAGGAATGGAAGGATTAGATAAAGAGAAAATTAACAAAATTATAATG
GACGCCACAAAGGGATCCAAATATTATGGAAATGAACTCAAGAAGGAAAAACAAGTCAACCAAC
GAATTAAAAATATGATGCAACAAAAAGCTCAAATTAACAGCCAGCAACTAAGGAAAGCACAATT
ACAGGTTGACAAATTTGCAATGGAATTAGAACAGGGCCGGGATTTGAACAATACCATAGTGCAT
GTTGACATGGATGCCTTCTATGCAGCTGTAGAAATGAGGGACAATCCAGAATTAAAGGATAAAC
CCATTGCTGTAGGATCAATGAGTATGTTGTCTACTTCAAATTACATTGCAAGGAGGTTTGGTGT
TCGTGCAGCCATGCCAGGATTTATTGCTAAGAGACTCTGCCCACAACTTATCATAGTGCCCCCA
AACTTTGACAAATACAGAGCTGTGAGTAAAGAGGTTAAGGAAATACTTGCTGATTATGATCCCA
ATTTTATGGCTGTGAGTCTTGATGAAGCTTACTTGAATATAACCAAGCACTTACAGGAAAGACA
AAATTGGCCTGAGGACAAAAGAAAGTATTTTGTCAAAACTGAAAATGCCATAGAAAATGATAAA
CCAGAAAAGGAAGTGGATAAATTGAGTGAGCATGAACGGACCATCTCTCCACTACTTTTCGAAG
ATAGTCCTCCTGATTTGCAAACCCCATGGAACTTTGAAGAACAAAACAAACCTCTACAGAATTC
AGTTGTTTTTGGAACATCAGCTGAGGAAGTGGTAAAGGAAATTCGTTTCAGAATTGAGCAAAAA
ACAACACTGACGGCCAGTGCAGGAATTGCTCCCAATACAATGTTGGCAAAAGTTTGCAGTGACA
AGAATAAGCCAAATGGACAATATCAAATTCTCCCCAACAGACAAGCTGTGATGGGCTTCATCAA
AGACTTACCAATTAGGAAGGTTTCTGGAATAGGAAAAGTTACAGAGAAAATGTTAAAGGCCCTT
GGAATTATTACTTGTACAGAACTCTACCAACAGAGGGCATTACTTTCTCTCCTTTTCTCTGAAA
CATCTTGGCATTATTTCCTTCACATCTCTCTGGGTCTAGGTTCAACACATCTAGCAAGGGATGG
AGAAAGGAAAAGCATGAGCGTTGAGAGGACCTTCAGTGAAATAAGTAAAGCAGAAGAACAGTAC
AGCTTGTGCCAAGAACTTTGCAGTGAACTCGCGCAAGATCTCCAGAAAGAAAAGCTTAAGGGTA
GAACTGTTACCATTAAACTGAAGAATGTGAATTTTGAAGTAAAAACTCGTGCATCTACAGTTTC
ATCTGTTGTTTCTACTGCGGAAGAAATATTTGCCATCGCTAAGGAGTTGCTAAGGACAGAAATT
GATGCGGATTTTCCACGTCCCTTGAGATTAAGACTTATGGGTGTTCGGATATCTGGTTTTCCCA
ATGAAGAAGACAAGAAACACCAACAAAGGAGCATCATTGGCTTCTTACAGGGTGGAAACCAAGC
CCTGTCAGTCACTGAGTGTATGCTAGAGAAAACAGACAAAGATCAGTTTGTAAAACCTCTAGAA
ACATCTCATAAGAAGAGTTTCTTTGATAAAAAACGATCAGAAAGGAAATGGAGCCACCAGGACA
CATCTAAATGTGAAACTATAGTTAAAGAAAGTTTACAGATATCACAACCATTCCAAGTTTTAAA
GAAGAAGACAAGTGAGAATTTAAAAACATCAGATAATTCAGATAACTTTCAGATATTTACCTGT
CCTGTTTGCTTTAGGGAACAAAGAAGCATCAGTCTGGAAGCCTTTAATAAACATGTAGATGTGT
GTCTTGATGGACCTTCAATTAGGGAGAACTCGAAAATGAATTTTTCAAATGCTTCCTCTACTGA
AGTTAACCTGAAAGAAATCACAAAACATTCTTTTTTACTTTGTGAAAAGCAATATTATGAAACT
CATCAGAAAAATGTAGAAATCACTTCAGTAGATTGTGTAAATTTGGTAGAAACTAGAAATAATT
CATCTAAAGCAGGAAGTGTAGACACTGAGCACAGCAAGGAGGAATGTTCTAGTCTTCCAAGCAA
GTCTTGTCTTGTTTCATTGGAAAATCAAGATGCTGAGTTACTAAGTAGACAAGAACCACTCCAA
CCTTGTGTGTATCAAGTGACAGCAGGCCAAGCGCTAGTTTTTCCAGTTTGTAATCTAGAACAAA
AAACTTCAGATCTTACGCTGTTCAATGTGCACGTGGATGTTTGCTTAAATAAAGGTATTATCCA
AGAACTGAAGAATGATAAAGTTTATCCTCTTAACCAACCCAAAGATAGCTCCAGAAGTACTGGT
AGCTCAAGCAGAGTACAGAAGACCAGAACAAAAAGGGTAGGACTAACCGCAAAGTACTCAGCAT
CAAAGAAAATAAAACCGAACAATCCCAGATACACTCTTGATATATTTTTTAAATGAACATTGAA
TATTTTATCATCAATTTTAATTGAAACTTCTTATTTTGTAATAAATGAAATTATTCTTTCTCAT
TTTAACTTTATAGATTCATGTAGTGAAGGCAAGTACAATAATTCCTCCCAAATGATGTTTCCTT
TTCTAAGAATTTAGAATATAGGTTAATTTATTTTTGTATTTATTTTAATTTTTTGGTACCAGGA
ATTGAAC

hide sequence

RefSeq Acc Id:

XM_040272332 ⟹ XP_040128266

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,507 - 189,658,957 (+)	NCBI

RefSeq Acc Id:

XM_040272333 ⟹ XP_040128267

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,507 - 189,658,957 (+)	NCBI

RefSeq Acc Id:

XM_040272334 ⟹ XP_040128268

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,596,918 - 189,658,957 (+)	NCBI

RefSeq Acc Id:

XM_040272335 ⟹ XP_040128269

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	189,597,301 - 189,658,957 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005329001	(Get FASTA)	NCBI Sequence Viewer
	XP_021584526	(Get FASTA)	NCBI Sequence Viewer
	XP_021584527	(Get FASTA)	NCBI Sequence Viewer
	XP_021584528	(Get FASTA)	NCBI Sequence Viewer
	XP_021584529	(Get FASTA)	NCBI Sequence Viewer
	XP_040128266	(Get FASTA)	NCBI Sequence Viewer
	XP_040128267	(Get FASTA)	NCBI Sequence Viewer
	XP_040128268	(Get FASTA)	NCBI Sequence Viewer
	XP_040128269	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000002866.3
	ENSSTOP00000022810.2
	ENSSTOP00000025951.1
	ENSSTOP00000027756.1
	ENSSTOP00000028383.1
	ENSSTOP00000028614.1
	ENSSTOP00000031373.1
	ENSSTOP00000032232.1
GenBank Protein	KAG3266528	(Get FASTA)	NCBI Sequence Viewer
	KAG3266529	(Get FASTA)	NCBI Sequence Viewer
	KAG3266530	(Get FASTA)	NCBI Sequence Viewer
	KAG3266531	(Get FASTA)	NCBI Sequence Viewer
	KAG3266532	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005329001 ⟸ XM_005328944

- Sequence:

show sequence

MYSTKEKNDNDKDDLLLRMGLNDNKAGMEGLDKEKINKIIMDATKGSKYYGNELKKEKQVNQRI
KNMMQQKAQINSQQLRKAQLQVDKFAMELEQGRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPI
AVGSMSMLSTSNYIARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF
MAVSLDEAYLNITKHLQERQNWPEDKRKYFVKTENAIENDKPEKEVDKLSEHERTISPLLFEDS
PPDLQTPWNFEEQNKPLQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN
KPNGQYQILPNRQAVMGFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETS
WHYFLHISLGLGSTHLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEKLKGRT
VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRISGFPNE
EDKKHQQRSIIGFLQGGNQALSVTECMLEKTDKDQFVKPLETSHKKSFFDKKRSERKWSHQDTS
KCETIVKESLQISQPFQVLKKKTSENLKTSDNSDNFQIFTCPVCFREQRSISLEAFNKHVDVCL
DGPSIRENSKMNFSNASSTEVNLKEITKHSFLLCEKQYYETHQKNVEITSVDCVNLVETRNNSS
KAGSVDTEHSKEECSSLPSKSCLVSLENQDAELLSRQEPLQPCVYQVTAGQALVFPVCNLEQKT
SDLTLFNVHVDVCLNKGIIQELKNDKVYPLNQPKDSSRSTGSSSRVQKTRTKRVGLTAKYSASK
KIKPNNPRYTLDIFFK

hide sequence

RefSeq Acc Id:

XP_021584529 ⟸ XM_021728854

- Sequence:

show sequence

MYSTKEKNDNDKDDLLLRMGLNDNKAGMEGLDKEKINKIIMDATKGSKYYGNELKKEKQVNQRI
KNMMQQKAQINSQQLRKAQLQVDKFAMELEQGRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPI
AVGSMSMLSTSNYIARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF
MAVSLDEAYLNITKHLQERQNWPEDKRKYFVKTENAIENDKPEKEVDKLSEHERTISPLLFEDS
PPDLQTPWNFEEQNKPLQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN
KPNGQYQILPNRQAVMGFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETS
WHYFLHISLGLGSTHLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEKLKGRT
VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRISGFPNE
EDKKHQQRSIIGFLQGGNQALSVTECMLEKTDKDQFVKPLETSHKKSFFDKKRSERKWSHQDTS
KCETIVKESLQISQPFQVLKKKTSENLKTSDNSDNFQIFTCPVCFREQRSISLEAFNKHVDVCL
DGPSIRENSKMNFSNASSTEVNLKEITKHSFLLCEKQYYETHQKNVEITSVDCVNLVETRNNSS
KAGSVDTEHSKEECSSLPSKSCLVSLENQDAELLSRQEPLQPCVYQVTAGQALVFPVCNLEQKT
SDLTLFNVHVDVCLNKGIIQELKNDKVYPLNQPKDSSRSTGSSSRVQKTRTKRVGLTAKYSASK
KIKPNNPRYTLDIFFK

hide sequence

RefSeq Acc Id:

XP_021584528 ⟸ XM_021728853

- Sequence:

show sequence

MYSTKEKNDNDKDDLLLRMGLNDNKAGMEGLDKEKINKIIMDATKGSKYYGNELKKEKQVNQRI
KNMMQQKAQINSQQLRKAQLQVDKFAMELEQGRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPI
AVGSMSMLSTSNYIARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF
MAVSLDEAYLNITKHLQERQNWPEDKRKYFVKTENAIENDKPEKEVDKLSEHERTISPLLFEDS
PPDLQTPWNFEEQNKPLQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN
KPNGQYQILPNRQAVMGFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETS
WHYFLHISLGLGSTHLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEKLKGRT
VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRISGFPNE
EDKKHQQRSIIGFLQGGNQALSVTECMLEKTDKDQFVKPLETSHKKSFFDKKRSERKWSHQDTS
KCETIVKESLQISQPFQVLKKKTSENLKTSDNSDNFQIFTCPVCFREQRSISLEAFNKHVDVCL
DGPSIRENSKMNFSNASSTEVNLKEITKHSFLLCEKQYYETHQKNVEITSVDCVNLVETRNNSS
KAGSVDTEHSKEECSSLPSKSCLVSLENQDAELLSRQEPLQPCVYQVTAGQALVFPVCNLEQKT
SDLTLFNVHVDVCLNKGIIQELKNDKVYPLNQPKDSSRSTGSSSRVQKTRTKRVGLTAKYSASK
KIKPNNPRYTLDIFFK

hide sequence

RefSeq Acc Id:

XP_021584527 ⟸ XM_021728852

- Sequence:

show sequence

MYSTKEKNDNDKDDLLLRMGLNDNKAGMEGLDKEKINKIIMDATKGSKYYGNELKKEKQVNQRI
KNMMQQKAQINSQQLRKAQLQVDKFAMELEQGRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPI
AVGSMSMLSTSNYIARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF
MAVSLDEAYLNITKHLQERQNWPEDKRKYFVKTENAIENDKPEKEVDKLSEHERTISPLLFEDS
PPDLQTPWNFEEQNKPLQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN
KPNGQYQILPNRQAVMGFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETS
WHYFLHISLGLGSTHLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEKLKGRT
VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRISGFPNE
EDKKHQQRSIIGFLQGGNQALSVTECMLEKTDKDQFVKPLETSHKKSFFDKKRSERKWSHQDTS
KCETIVKESLQISQPFQVLKKKTSENLKTSDNSDNFQIFTCPVCFREQRSISLEAFNKHVDVCL
DGPSIRENSKMNFSNASSTEVNLKEITKHSFLLCEKQYYETHQKNVEITSVDCVNLVETRNNSS
KAGSVDTEHSKEECSSLPSKSCLVSLENQDAELLSRQEPLQPCVYQVTAGQALVFPVCNLEQKT
SDLTLFNVHVDVCLNKGIIQELKNDKVYPLNQPKDSSRSTGSSSRVQKTRTKRVGLTAKYSASK
KIKPNNPRYTLDIFFK

hide sequence

RefSeq Acc Id:

XP_021584526 ⟸ XM_021728851

- Sequence:

show sequence

MYSTKEKNDNDKDDLLLRMGLNDNKAGMEGLDKEKINKIIMDATKGSKYYGNELKKEKQVNQRI
KNMMQQKAQINSQQLRKAQLQVDKFAMELEQGRDLNNTIVHVDMDAFYAAVEMRDNPELKDKPI
AVGSMSMLSTSNYIARRFGVRAAMPGFIAKRLCPQLIIVPPNFDKYRAVSKEVKEILADYDPNF
MAVSLDEAYLNITKHLQERQNWPEDKRKYFVKTENAIENDKPEKEVDKLSEHERTISPLLFEDS
PPDLQTPWNFEEQNKPLQNSVVFGTSAEEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKN
KPNGQYQILPNRQAVMGFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSETS
WHYFLHISLGLGSTHLARDGERKSMSVERTFSEISKAEEQYSLCQELCSELAQDLQKEKLKGRT
VTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLRTEIDADFPRPLRLRLMGVRISGFPNE
EDKKHQQRSIIGFLQGGNQALSVTECMLEKTDKDQFVKPLETSHKKSFFDKKRSERKWSHQDTS
KCETIVKESLQISQPFQVLKKKTSENLKTSDNSDNFQIFTCPVCFREQRSISLEAFNKHVDVCL
DGPSIRENSKMNFSNASSTEVNLKEITKHSFLLCEKQYYETHQKNVEITSVDCVNLVETRNNSS
KAGSVDTEHSKEECSSLPSKSCLVSLENQDAELLSRQEPLQPCVYQVTAGQALVFPVCNLEQKT
SDLTLFNVHVDVCLNKGIIQELKNDKVYPLNQPKDSSRSTGSSSRVQKTRTKRVGLTAKYSASK
KIKPNNPRYTLDIFFK

hide sequence

RefSeq Acc Id:

XP_040128268 ⟸ XM_040272334

RefSeq Acc Id:

XP_040128269 ⟸ XM_040272335

RefSeq Acc Id:

XP_040128266 ⟸ XM_040272332

RefSeq Acc Id:

XP_040128267 ⟸ XM_040272333

Protein Domains

UmuC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003205	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003212.3	UniProtKB/TrEMBL
	ENSSTOT00000029024.2	UniProtKB/TrEMBL
	ENSSTOT00000031383.1	UniProtKB/TrEMBL
	ENSSTOT00000036301.1	UniProtKB/TrEMBL
	ENSSTOT00000039838.1	UniProtKB/TrEMBL
	ENSSTOT00000040585.1	UniProtKB/TrEMBL
	ENSSTOT00000041757.1	UniProtKB/TrEMBL
	ENSSTOT00000042331.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.150.810	UniProtKB/TrEMBL
	3.30.1490.100	UniProtKB/TrEMBL
	3.30.70.270	UniProtKB/TrEMBL
	3.40.1170.60	UniProtKB/TrEMBL
InterPro	DNA/RNA_pol_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_lit_finger_sf	UniProtKB/TrEMBL
	DNA_pol_Y-fam_little_finger	UniProtKB/TrEMBL
	DNApol_IV	UniProtKB/TrEMBL
	PolY_HhH_motif	UniProtKB/TrEMBL
	Rev_trsase/Diguanyl_cyclase	UniProtKB/TrEMBL
	UmuC	UniProtKB/TrEMBL
NCBI Gene	Polk	ENTREZGENE
PANTHER	DNA POLYMERASE KAPPA	UniProtKB/TrEMBL
	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	IMS	UniProtKB/TrEMBL
	IMS_C	UniProtKB/TrEMBL
	IMS_HHH	UniProtKB/TrEMBL
PROSITE	UMUC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF100879	UniProtKB/TrEMBL
	SSF56672	UniProtKB/TrEMBL
UniProt	A0A287CXE3_ICTTR	UniProtKB/TrEMBL
	A0A287D2F1_ICTTR	UniProtKB/TrEMBL
	A0A287D4A2_ICTTR	UniProtKB/TrEMBL
	A0A287D510_ICTTR	UniProtKB/TrEMBL
	A0A287DCV2_ICTTR	UniProtKB/TrEMBL
	A0A287DFD8_ICTTR	UniProtKB/TrEMBL
	I3M1V1_ICTTR	UniProtKB/TrEMBL
	I3NEL3_ICTTR	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations