Faap100 (FA core complex associated protein 100) - Rat Genome Database

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Gene: Faap100 (FA core complex associated protein 100) Ictidomys tridecemlineatus
Analyze
Symbol: Faap100
Name: FA core complex associated protein 100
RGD ID: 12553820
Description: INVOLVED IN interstrand cross-link repair (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fanconi anemia core complex associated protein 100; Fanconi anemia core complex-associated protein 100; Fanconi anemia-associated protein of 100 kDa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,208,635 - 1,218,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,193,355 - 5,203,324 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,194,502 - 5,203,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Faap100
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,208,635 - 1,218,276 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,193,355 - 5,203,324 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,194,502 - 5,203,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAAP100
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,539,891 - 81,553,133 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,539,885 - 81,553,961 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,506,917 - 79,519,379 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,117,387 - 77,130,023 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,151,328 - 76,163,810 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,954,601 - 74,967,082 (-)NCBIHuRef
CHM1_11779,593,115 - 79,605,638 (-)NCBICHM1_1
T2T-CHM13v2.01782,457,203 - 82,471,696 (-)NCBIT2T-CHM13v2.0
Faap100
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,260,388 - 120,269,572 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,259,881 - 120,269,590 (-)EnsemblGRCm39 Ensembl
GRCm3811120,369,562 - 120,378,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,369,055 - 120,378,764 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,230,876 - 120,240,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,185,657 - 120,194,707 (-)NCBIMGSCv36mm8
Celera11132,104,313 - 132,113,499 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.08NCBI
Faap100
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,140,820 - 106,152,500 (-)NCBIGRCr8
mRatBN7.210105,641,677 - 105,653,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,639,414 - 105,653,494 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010109,539,381 - 109,552,434 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,539,548 - 109,551,362 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,135,731 - 109,146,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410109,797,992 - 109,806,963 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110109,810,309 - 109,821,467 (-)NCBI
Celera10104,186,024 - 104,199,095 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Faap100
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,515,998 - 1,527,668 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,515,908 - 1,525,660 (+)NCBIChiLan1.0ChiLan1.0
FAAP100
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,126,715 - 98,142,244 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,027,000 - 103,041,978 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,995,994 - 76,008,255 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,697,543 - 81,710,842 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,697,543 - 81,709,438 (-)Ensemblpanpan1.1panPan2
FAAP100
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19607,198 - 615,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9607,135 - 616,159 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha91,210,038 - 1,218,768 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.091,201,468 - 1,210,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,201,471 - 1,210,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,225,206 - 1,234,899 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,352,016 - 1,360,739 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,431,902 - 1,440,632 (+)NCBIUU_Cfam_GSD_1.0
FAAP100
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,288,378 - 1,297,147 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,288,371 - 1,297,147 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,131,198 - 1,140,201 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAAP100
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,482,904 - 73,498,205 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607744,864,927 - 44,879,271 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Faap100
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,518,821 - 10,528,594 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,518,916 - 10,528,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000000077   ⟹   ENSSTOP00000000065
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365945,193,355 - 5,203,324 (-)Ensembl
RefSeq Acc Id: XM_021731281   ⟹   XP_021586956
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056021,208,635 - 1,218,276 (+)NCBI
SpeTri2.0NW_0049365945,194,502 - 5,203,318 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040268347   ⟹   XP_040124281
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056021,208,689 - 1,218,276 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021586956 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124281 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000065.2
GenBank Protein KAG3268301 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021586956   ⟸   XM_021731281
- UniProtKB: I3LVX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040124281   ⟸   XM_040268347
- UniProtKB: I3LVX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000000065   ⟸   ENSSTOT00000000077


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000077.3 UniProtKB/TrEMBL
InterPro Faap100 UniProtKB/TrEMBL
NCBI Gene Faap100 ENTREZGENE
PANTHER FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 UniProtKB/TrEMBL
  PTHR14890 UniProtKB/TrEMBL
Pfam FANCAA UniProtKB/TrEMBL
UniProt I3LVX6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-15 Faap100  FA core complex associated protein 100    Fanconi anemia core complex associated protein 100  Symbol and/or name change 5135510 APPROVED