Alkbh7 (alkB homolog 7) - Rat Genome Database

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Gene: Alkbh7 (alkB homolog 7) Ictidomys tridecemlineatus
Analyze
Symbol: Alkbh7
Name: alkB homolog 7
RGD ID: 12692975
Description: ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); INVOLVED IN DNA damage response (inferred); fatty acid metabolic process (inferred); regulation of lipid storage (inferred); ASSOCIATED WITH mucolipidosis type IV (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alkB, alkylation repair homolog 7; alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,100,011 - 214,101,677 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,732,526 - 3,737,219 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,733,103 - 3,734,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Alkbh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,100,011 - 214,101,677 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,732,526 - 3,737,219 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,733,103 - 3,734,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38196,372,794 - 6,375,250 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl196,372,794 - 6,375,250 (+)EnsemblGRCh38hg38GRCh38
GRCh37196,372,805 - 6,375,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36196,323,444 - 6,326,040 (+)NCBINCBI36Build 36hg18NCBI36
Build 34196,323,443 - 6,326,040NCBI
Celera196,311,231 - 6,314,048 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef196,132,589 - 6,135,406 (+)NCBIHuRef
CHM1_1196,372,069 - 6,374,886 (+)NCBICHM1_1
T2T-CHM13v2.0196,361,696 - 6,364,152 (+)NCBIT2T-CHM13v2.0
Alkbh7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,304,339 - 57,306,340 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,304,339 - 57,306,322 (+)EnsemblGRCm39 Ensembl
GRCm381756,997,339 - 56,999,340 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,997,339 - 56,999,322 (+)EnsemblGRCm38mm10GRCm38
MGSCv371757,136,776 - 57,138,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,682,477 - 56,684,446 (+)NCBIMGSCv36mm8
Celera1761,345,279 - 61,347,248 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.61NCBI
Alkbh7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,925,896 - 1,928,048 (+)NCBIGRCr8
mRatBN7.291,838,886 - 1,841,044 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,838,811 - 1,841,044 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,272,791 - 2,274,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,622,150 - 7,624,284 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,578,011 - 6,580,146 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,045,375 - 10,047,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,045,375 - 10,047,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,046,025 - 9,048,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,676,245 - 6,678,377 (-)NCBICelera
Cytogenetic Map9q11NCBI
Alkbh7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,220,994 - 3,223,551 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,220,994 - 3,222,675 (-)NCBIChiLan1.0ChiLan1.0
ALKBH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,770,082 - 10,775,706 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,999,342 - 10,001,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,393,317 - 5,395,886 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1196,315,604 - 6,318,174 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl196,315,604 - 6,318,170 (+)Ensemblpanpan1.1panPan2
ALKBH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12053,783,948 - 53,785,563 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2053,783,993 - 53,785,524 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,530,856 - 53,532,460 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,438,215 - 54,439,821 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,438,223 - 54,439,826 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,504,678 - 53,506,283 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02053,953,017 - 53,954,622 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,182,768 - 54,184,373 (-)NCBIUU_Cfam_GSD_1.0
ALKBH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl272,698,529 - 72,703,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1272,702,077 - 72,703,924 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,215,582 - 73,218,234 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALKBH7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,988,610 - 5,991,194 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,988,371 - 5,991,136 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,032,188 - 2,034,764 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alkbh7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,507,657 - 3,509,314 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,507,657 - 3,509,314 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000002358   ⟹   ENSSTOP00000002109
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,733,146 - 3,734,709 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032488   ⟹   ENSSTOP00000026870
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,732,526 - 3,737,219 (+)Ensembl
RefSeq Acc Id: XM_005332082   ⟹   XP_005332139
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,100,011 - 214,101,677 (-)NCBI
SpeTri2.0NW_0049365883,733,103 - 3,734,770 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005332139 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002109.3
  ENSSTOP00000026870.1
GenBank Protein KAG3280603 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005332139   ⟸   XM_005332082
- UniProtKB: A0A287CZV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000002109   ⟸   ENSSTOT00000002358
Ensembl Acc Id: ENSSTOP00000026870   ⟸   ENSSTOT00000032488
Protein Domains
Alpha-ketoglutarate-dependent dioxygenase AlkB-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002368 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002358.3 UniProtKB/TrEMBL
  ENSSTOT00000032488.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.590 UniProtKB/TrEMBL
InterPro AlkB-like UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/TrEMBL
  ALKBH7 UniProtKB/TrEMBL
NCBI Gene Alkbh7 ENTREZGENE
PANTHER ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 7, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR21052 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/TrEMBL
Superfamily-SCOP Clavaminate synthase-like UniProtKB/TrEMBL
UniProt A0A287CZV1 ENTREZGENE, UniProtKB/TrEMBL
  I3M093_ICTTR UniProtKB/TrEMBL