Zdhhc16 (zinc finger DHHC-type palmitoyltransferase 16) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Zdhhc16 (zinc finger DHHC-type palmitoyltransferase 16) Ictidomys tridecemlineatus
Analyze
Symbol: Zdhhc16
Name: zinc finger DHHC-type palmitoyltransferase 16
RGD ID: 12689542
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); palmitoyltransferase activity (inferred); protein-cysteine S-palmitoyltransferase activity (inferred); INVOLVED IN protein palmitoylation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: palmitoyltransferase ZDHHC16; probable palmitoyltransferase ZDHHC16; zinc finger DHHC-type containing 16; zinc finger DHHC-type containing 16, transcript variant X1; zinc finger DHHC-type containing 16, transcript variant X2; zinc finger DHHC-type containing 16, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,182,135 - 36,191,464 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,221,255 - 2,230,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,221,254 - 2,230,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zdhhc16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,182,135 - 36,191,464 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,221,255 - 2,230,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,221,254 - 2,230,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,446,175 - 97,457,370 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,446,170 - 97,457,370 (+)EnsemblGRCh38hg38GRCh38
GRCh371099,205,932 - 99,217,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,195,920 - 99,207,117 (+)NCBINCBI36Build 36hg18NCBI36
Celera1092,943,986 - 92,955,183 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,831,586 - 92,842,787 (+)NCBIHuRef
CHM1_11099,487,670 - 99,498,870 (+)NCBICHM1_1
T2T-CHM13v2.01098,326,355 - 98,337,553 (+)NCBIT2T-CHM13v2.0
Zdhhc16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391941,921,884 - 41,932,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1941,921,919 - 41,932,543 (+)EnsemblGRCm39 Ensembl
GRCm381941,933,445 - 41,944,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1941,933,480 - 41,944,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv371942,007,962 - 42,018,593 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361941,986,824 - 41,997,411 (+)NCBIMGSCv36mm8
Celera1942,734,721 - 42,745,222 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.48NCBI
Zdhhc16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,694,922 - 250,706,319 (+)NCBIGRCr8
mRatBN7.21240,745,606 - 240,757,009 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,745,641 - 240,757,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,890,948 - 248,902,324 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,588,094 - 255,599,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,241,105 - 248,252,481 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,179,971 - 261,191,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,180,007 - 261,191,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,632,448 - 268,643,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1236,580,659 - 236,592,002 (+)NCBICelera
Cytogenetic Map1q54NCBI
Zdhhc16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,583,307 - 3,593,222 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,583,306 - 3,593,222 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,360,513 - 109,371,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,365,832 - 109,376,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,068,816 - 94,079,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,562,379 - 97,573,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1097,562,379 - 97,573,305 (+)Ensemblpanpan1.1panPan2
ZDHHC16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,739,043 - 10,749,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,743,285 - 10,749,074 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2810,921,731 - 10,931,821 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,061,361 - 11,071,454 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,061,379 - 11,071,450 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,722,422 - 10,732,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,782,952 - 10,793,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02810,923,129 - 10,933,218 (+)NCBIUU_Cfam_GSD_1.0
ZDHHC16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,842,966 - 108,852,789 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,842,950 - 108,852,793 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,346,893 - 118,356,733 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,615,962 - 90,628,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,622,613 - 90,628,080 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,107,491 - 9,117,569 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,107,481 - 9,117,569 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000006620   ⟹   ENSSTOP00000005920
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366362,221,726 - 2,226,927 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000035574   ⟹   ENSSTOP00000028255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366362,221,607 - 2,230,641 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000042658   ⟹   ENSSTOP00000024437
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366362,221,255 - 2,230,583 (-)Ensembl
RefSeq Acc Id: XM_005335266   ⟹   XP_005335323
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721336,182,135 - 36,191,462 (-)NCBI
SpeTri2.0NW_0049366362,221,255 - 2,230,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005335267   ⟹   XP_005335324
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721336,182,135 - 36,191,461 (-)NCBI
SpeTri2.0NW_0049366362,221,254 - 2,230,586 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040272582   ⟹   XP_040128516
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721336,182,135 - 36,189,070 (-)NCBI
RefSeq Acc Id: XM_040272583   ⟹   XP_040128517
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721336,182,135 - 36,191,464 (-)NCBI
RefSeq Acc Id: XM_040272584   ⟹   XP_040128518
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721336,182,135 - 36,191,464 (-)NCBI
RefSeq Acc Id: XP_005335324   ⟸   XM_005335267
- Peptide Label: isoform X2
- UniProtKB: A0A287CT38 (UniProtKB/TrEMBL),   I3M892 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005335323   ⟸   XM_005335266
- Peptide Label: isoform X1
- UniProtKB: A0A287D419 (UniProtKB/TrEMBL),   I3M892 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040128518   ⟸   XM_040272584
- Peptide Label: isoform X4
- UniProtKB: I3M892 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128517   ⟸   XM_040272583
- Peptide Label: isoform X3
- UniProtKB: I3M892 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128516   ⟸   XM_040272582
- Peptide Label: isoform X1
- UniProtKB: A0A287D419 (UniProtKB/TrEMBL),   I3M892 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000024437   ⟸   ENSSTOT00000042658
Ensembl Acc Id: ENSSTOP00000028255   ⟸   ENSSTOT00000035574
Ensembl Acc Id: ENSSTOP00000005920   ⟸   ENSSTOT00000006620
Protein Domains
Palmitoyltransferase DHHC


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006627 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006620.3 UniProtKB/TrEMBL
  ENSSTOT00000035574.1 UniProtKB/TrEMBL
  ENSSTOT00000042658.1 UniProtKB/TrEMBL
InterPro Palmitoyltrfase_DHHC UniProtKB/TrEMBL
NCBI Gene Zdhhc16 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC16 UniProtKB/TrEMBL
  PTHR12246 UniProtKB/TrEMBL
Pfam DHHC UniProtKB/TrEMBL
PROSITE DHHC UniProtKB/TrEMBL
UniProt A0A287CT38 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D419 ENTREZGENE, UniProtKB/TrEMBL
  I3M892 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-22 Zdhhc16  zinc finger DHHC-type palmitoyltransferase 16  Zdhhc16  zinc finger DHHC-type containing 16  Symbol and/or name change 5135510 APPROVED