ZDHHC16 (zinc finger DHHC-type palmitoyltransferase 16) - Rat Genome Database

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Gene: ZDHHC16 (zinc finger DHHC-type palmitoyltransferase 16) Chlorocebus sabaeus
Analyze
Symbol: ZDHHC16
Name: zinc finger DHHC-type palmitoyltransferase 16
RGD ID: 18577755
Description: ENCODES a protein that exhibits acyltransferase activity (inferred); palmitoyltransferase activity (inferred); protein-cysteine S-palmitoyltransferase activity (inferred); INVOLVED IN DNA damage response (inferred); eye development (inferred); heart development (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: palmitoyltransferase ZDHHC16; probable palmitoyltransferase ZDHHC16; zinc finger DHHC-type containing 16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,615,962 - 90,628,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,622,613 - 90,628,080 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZDHHC16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,615,962 - 90,628,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,622,613 - 90,628,080 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZDHHC16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,446,175 - 97,457,370 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,446,170 - 97,457,370 (+)EnsemblGRCh38hg38GRCh38
GRCh371099,205,932 - 99,217,127 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,195,920 - 99,207,117 (+)NCBINCBI36Build 36hg18NCBI36
Celera1092,943,986 - 92,955,183 (+)NCBICelera
Cytogenetic Map10q24.1NCBI
HuRef1092,831,586 - 92,842,787 (+)NCBIHuRef
CHM1_11099,487,670 - 99,498,870 (+)NCBICHM1_1
T2T-CHM13v2.01098,326,355 - 98,337,553 (+)NCBIT2T-CHM13v2.0
Zdhhc16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391941,921,884 - 41,932,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1941,921,919 - 41,932,543 (+)EnsemblGRCm39 Ensembl
GRCm381941,933,445 - 41,944,104 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1941,933,480 - 41,944,104 (+)EnsemblGRCm38mm10GRCm38
MGSCv371942,007,962 - 42,018,593 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361941,986,824 - 41,997,411 (+)NCBIMGSCv36mm8
Celera1942,734,721 - 42,745,222 (+)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.48NCBI
Zdhhc16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,694,922 - 250,706,319 (+)NCBIGRCr8
mRatBN7.21240,745,606 - 240,757,009 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,745,641 - 240,757,009 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1248,890,948 - 248,902,324 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,588,094 - 255,599,470 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,241,105 - 248,252,481 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,179,971 - 261,191,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,180,007 - 261,191,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,632,448 - 268,643,849 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1236,580,659 - 236,592,002 (+)NCBICelera
Cytogenetic Map1q54NCBI
Zdhhc16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,583,307 - 3,593,222 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,583,306 - 3,593,222 (+)NCBIChiLan1.0ChiLan1.0
ZDHHC16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,360,513 - 109,371,351 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,365,832 - 109,376,670 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,068,816 - 94,079,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,562,379 - 97,573,305 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1097,562,379 - 97,573,305 (+)Ensemblpanpan1.1panPan2
ZDHHC16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,739,043 - 10,749,121 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,743,285 - 10,749,074 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2810,921,731 - 10,931,821 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,061,361 - 11,071,454 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,061,379 - 11,071,450 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,722,422 - 10,732,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,782,952 - 10,793,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02810,923,129 - 10,933,218 (+)NCBIUU_Cfam_GSD_1.0
Zdhhc16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,182,135 - 36,191,464 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,221,255 - 2,230,641 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,221,254 - 2,230,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,842,966 - 108,852,789 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,842,950 - 108,852,793 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,346,893 - 118,356,733 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Zdhhc16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,107,491 - 9,117,569 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,107,481 - 9,117,569 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 5 46
Low 15 14
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000003901   ⟹   ENSCSAP00000002172
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl990,622,613 - 90,628,080 (+)Ensembl
RefSeq Acc Id: XM_007963739   ⟹   XP_007961930
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,615,988 - 90,628,559 (+)NCBI
Vero_WHO_p1.0NW_02366604851,513,534 - 51,525,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963740   ⟹   XP_007961931
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,615,962 - 90,628,559 (+)NCBI
Vero_WHO_p1.0NW_02366604851,513,534 - 51,525,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963741   ⟹   XP_007961932
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,615,988 - 90,628,559 (+)NCBI
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963742   ⟹   XP_007961933
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,615,962 - 90,628,559 (+)NCBI
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007963743   ⟹   XP_007961934
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1990,615,988 - 90,628,559 (+)NCBI
Vero_WHO_p1.0NW_02366604851,513,534 - 51,525,290 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038009394   ⟹   XP_037865322
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604851,513,524 - 51,525,290 (+)NCBI
RefSeq Acc Id: XP_007961931   ⟸   XM_007963740
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R0N3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007961933   ⟸   XM_007963742
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007961930   ⟸   XM_007963739
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007961934   ⟸   XM_007963743
- Peptide Label: isoform X5
RefSeq Acc Id: XP_007961932   ⟸   XM_007963741
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000002172   ⟸   ENSCSAT00000003901
RefSeq Acc Id: XP_037865322   ⟸   XM_038009394
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005867 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003901.1 UniProtKB/TrEMBL
InterPro Palmitoyltrfase_DHHC UniProtKB/TrEMBL
NCBI Gene ZDHHC16 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC16 UniProtKB/TrEMBL
  PTHR12246 UniProtKB/TrEMBL
Pfam DHHC UniProtKB/TrEMBL
PROSITE DHHC UniProtKB/TrEMBL
UniProt A0A0D9R0N3 ENTREZGENE, UniProtKB/TrEMBL