Crip1 (cysteine rich protein 1) - Rat Genome Database

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Gene: Crip1 (cysteine rich protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Crip1
Name: cysteine rich protein 1
RGD ID: 12707384
Description: ENCODES a protein that exhibits metal ion binding (inferred); peptide binding (inferred); zinc ion binding (inferred); INVOLVED IN cellular response to antibiotic (inferred); cellular response to UV-B (inferred); immune response (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine-rich protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,272,091 - 1,273,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621101,046 - 102,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621101,046 - 102,660 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Crip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,272,091 - 1,273,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621101,046 - 102,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621101,046 - 102,660 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,486,886 - 105,488,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,486,317 - 105,488,947 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,953,223 - 105,955,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614105,024,594 - 105,026,171 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414105,024,593 - 105,026,167NCBI
Celera1486,004,651 - 86,006,568 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1486,151,418 - 86,153,286 (+)NCBIHuRef
CHM1_114105,890,975 - 105,892,843 (+)NCBICHM1_1
T2T-CHM13v2.01499,736,255 - 99,738,315 (+)NCBIT2T-CHM13v2.0
Crip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912113,115,632 - 113,117,499 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12113,109,936 - 113,117,499 (+)EnsemblGRCm39 Ensembl
GRCm3812113,152,012 - 113,153,879 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12113,146,316 - 113,153,879 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,390,223 - 114,392,090 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,599,820 - 113,601,687 (+)NCBIMGSCv36mm8
Celera12114,367,853 - 114,369,721 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.59NCBI
Crip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86138,047,801 - 138,055,672 (+)NCBIGRCr8
mRatBN7.26132,226,746 - 132,234,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6132,226,746 - 132,234,620 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6132,395,928 - 132,403,668 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06132,686,073 - 132,693,813 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06132,061,146 - 132,069,019 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06137,959,171 - 137,967,042 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,959,171 - 137,967,042 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,953,514 - 146,961,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46138,156,366 - 138,161,127 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16138,162,743 - 138,165,342 (+)NCBI
Celera6129,765,196 - 129,773,068 (+)NCBICelera
Cytogenetic Map6q32NCBI
Crip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555383,683,747 - 3,686,468 (+)NCBIChiLan1.0ChiLan1.0
CRIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,669,273 - 106,676,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,891,619 - 105,893,192 (+)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl14105,914,119 - 105,915,365 (+)Ensemblpanpan1.1panPan2
CRIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,784,726 - 72,786,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,784,788 - 72,786,108 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha872,294,909 - 72,296,297 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0873,072,668 - 73,074,056 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl873,072,736 - 73,074,056 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,753,372 - 72,754,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,801,213 - 72,802,601 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0873,192,688 - 73,194,076 (+)NCBIUU_Cfam_GSD_1.0
LOC110258364
(Sus scrofa - pig)		 No map positions available.
CRIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12483,385,005 - 83,386,596 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2483,384,529 - 83,386,903 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605370,843,615 - 70,845,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473453,570 - 57,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473453,570 - 55,181 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000023261   ⟹   ENSSTOP00000018300
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936621101,046 - 102,664 (-)Ensembl
RefSeq Acc Id: XM_005334625   ⟹   XP_005334682
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086401,272,091 - 1,273,738 (-)NCBI
SpeTri2.0NW_004936621101,046 - 102,660 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334682 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018300.1
GenBank Protein KAG3260214 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005334682   ⟸   XM_005334625
- UniProtKB: I3N1Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018300   ⟸   ENSSTOT00000023261
Protein Domains
LIM zinc-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025103 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000023261.2 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
InterPro Znf_LIM UniProtKB/TrEMBL
NCBI Gene Crip1 ENTREZGENE
PANTHER CYSTEINE-RICH PROTEIN 1 UniProtKB/TrEMBL
  CYSTEINE-RICH PROTEIN CRIP FAMILY MEMBER UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt I3N1Q4 ENTREZGENE, UniProtKB/TrEMBL