Dek (DEK proto-oncogene) - Rat Genome Database

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Gene: Dek (DEK proto-oncogene) Ictidomys tridecemlineatus
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Symbol: Dek
Name: DEK proto-oncogene
RGD ID: 12651360
Description: ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN regulation of double-strand break repair (ortholog); regulation of double-strand break repair via nonhomologous end joining (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Breast Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN contractile fiber (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: DEK oncogene
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049467,737,766 - 7,766,430 (+)NCBI
SpeTri2.0NW_0049365523,964,515 - 3,997,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Dek
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049467,737,766 - 7,766,430 (+)NCBI
SpeTri2.0NW_0049365523,964,515 - 3,997,318 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DEK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl618,223,860 - 18,264,548 (-)EnsemblGRCh38hg38GRCh38
GRCh38618,223,860 - 18,264,541 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37618,224,091 - 18,264,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36618,332,379 - 18,372,778 (-)NCBINCBI36hg18NCBI36
Build 34618,332,391 - 18,372,750NCBI
Celera619,462,368 - 19,502,747 (-)NCBI
Cytogenetic Map6p22.3NCBI
HuRef618,168,737 - 18,209,264 (-)NCBIHuRef
CHM1_1618,226,996 - 18,267,392 (-)NCBICHM1_1
Dek
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391347,238,243 - 47,261,134 (-)NCBIGRCm39mm39
GRCm39 Ensembl1347,238,251 - 47,259,677 (-)Ensembl
GRCm381347,084,767 - 47,107,530 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1347,084,775 - 47,106,201 (-)EnsemblGRCm38mm10GRCm38
MGSCv371347,180,136 - 47,201,589 (-)NCBIGRCm37mm9NCBIm37
MGSCv361347,095,757 - 47,117,082 (-)NCBImm8
Celera1348,169,343 - 48,190,333 (-)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1324.5NCBI
Dek
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21717,580,804 - 17,602,825 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1717,580,843 - 17,602,808 (+)Ensembl
Rnor_6.01717,965,872 - 17,987,836 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1717,965,881 - 17,987,834 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01719,948,512 - 19,970,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41723,633,551 - 23,655,507 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11723,633,599 - 23,655,553 (+)NCBI
Celera1717,292,456 - 17,314,107 (+)NCBICelera
Cytogenetic Map17p14NCBI
Dek
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540828,470,207 - 28,472,083 (-)NCBIChiLan1.0ChiLan1.0
DEK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1618,425,882 - 18,465,828 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl618,427,844 - 18,465,606 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0618,071,928 - 18,112,245 (-)NCBIMhudiblu_PPA_v0panPan3
LOC100688177
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1310,279,204 - 10,280,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha311,622,628 - 11,624,150 (-)NCBI
ROS_Cfam_1.0310,169,743 - 10,171,465 (-)NCBI
UMICH_Zoey_3.1310,110,427 - 10,111,962 (-)NCBI
DEK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl713,872,775 - 13,935,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1713,901,562 - 13,935,477 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2714,643,279 - 14,676,979 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DEK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11753,879,902 - 53,919,533 (+)NCBI
Vero_WHO_p1.0NW_02366604418,447,488 - 18,487,777 (-)NCBI
Dek
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247568,421,492 - 8,447,452 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013360265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013360265   ⟹   XP_013215719
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049467,737,766 - 7,766,430 (+)NCBI
SpeTri2.0NW_0049365523,964,515 - 3,997,318 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013215719 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3288632 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215719   ⟸   XM_013360265
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021110 ENTREZGENE
NCBI Gene Dek ENTREZGENE