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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair
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Accession:GO:0006281 term browser browse the term
Definition:The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:xref: Wikipedia:DNA_repair



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DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC108595.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 Ensembl chr 7:122,951,378...122,953,062 JBrowse link
G Adprs ADP-ribosylserine hydrolase involved_in ISO (PMID:30045870) RGD PMID:30045870 NCBI chr 5:138,614,022...138,619,296
Ensembl chr 5:138,614,022...138,619,296
JBrowse link
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530), (PMID:19959401) RGD PMID:18603530 PMID:19959401 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISS
ISO
GO_REF:0000024
(PMID:16858410)
UniProt
RGD
PMID:16858410 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Ankle1 ankyrin repeat and LEM domain containing 1 NOT|involved_in ISO (MGI:5800654|PMID:27010503) RGD PMID:27010503 MGI:5800654 NCBI chr16:18,076,413...18,082,356
Ensembl chr16:18,076,492...18,083,729
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:1627644), (PMID:9560228)
UniProt
RGD
PMID:1627644 PMID:9560228 GO_REF:0000024 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:32,893,962...32,908,808
Ensembl chr20:32,893,573...32,908,808
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1857132|MGI:2155399 (MGI:2156121|PMID:11679583), (MGI:3053255|PMID:15364958), (MGI:3511081|PMID:15542845) RGD PMID:11679583 PMID:15364958 PMID:15542845 MGI:2156121 MGI:3053255 MGI:3511081 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Atr ATR serine/threonine kinase acts_upstream_of_or_within ISO (MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:3053255 NCBI chr 8:96,426,704...96,524,152
Ensembl chr 8:96,426,724...96,524,136
JBrowse link
G Atrip ATR interacting protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:109,708,440...109,722,511
Ensembl chr 8:109,708,440...109,722,477
JBrowse link
G Atrx ATRX, chromatin remodeler involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:70,850,981...70,997,330
Ensembl chr  X:70,850,981...70,997,330
JBrowse link
G Bach1 BTB domain and CNC homolog 1 involved_in ISO (PMID:11301010) RGD PMID:11301010 NCBI chr11:26,939,429...26,974,876
Ensembl chr11:26,939,480...26,972,447
JBrowse link
G Bard1 BRCA1 associated RING domain 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:72,616,070...72,694,553
Ensembl chr 9:72,623,155...72,694,265
JBrowse link
G Blm BLM RecQ like helicase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3053255|PMID:15364958)
RGD PMID:15364958 PMID:21873635 MGI:3053255, RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Cdc5l cell division cycle 5-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:15,564,949...15,603,453
Ensembl chr 9:15,564,767...15,603,450
JBrowse link
G Cdk2 cyclin dependent kinase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Cdk7 cyclin-dependent kinase 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:31,840,545...31,865,447
Ensembl chr 2:31,840,558...31,865,383
JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410
JBrowse link
G Cenps centromere protein S involved_in ISO (PMID:20347429) RGD PMID:20347429 NCBI chr 5:159,563,917...159,573,534 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:873,953...900,701
Ensembl chr 9:874,051...900,654
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595
JBrowse link
G Chek1 checkpoint kinase 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19716789)
(MGI:3053255|PMID:15364958)
RGD PMID:15364958 PMID:19716789 MGI:3053255 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009
JBrowse link
G Chrna4 cholinergic receptor nicotinic alpha 4 subunit involved_in IEA
ISO
GO_REF:0000107
(PMID:16332175)
Ensembl
RGD
PMID:16332175 GO_REF:0000107 NCBI chr 3:168,136,246...168,157,839
Ensembl chr 3:168,136,266...168,156,957
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 involved_in TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12145536 PMID:21873635 RGD:632554, RGD:13792537 NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
JBrowse link
G Ddb2 damage specific DNA binding protein 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:131,143,726...131,151,760
Ensembl chr 5:131,143,729...131,151,742
JBrowse link
G Dot1l DOT1 like histone lysine methyltransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:8,917,786...8,959,474
Ensembl chr 7:8,917,786...8,956,475
JBrowse link
G Eepd1 endonuclease/exonuclease/phosphatase family domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:23,957,258...24,064,343
Ensembl chr 8:23,957,255...24,064,340
JBrowse link
G Eid3 EP300 interacting inhibitor of differentiation 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:20,860,073...20,861,395 JBrowse link
G Endov endonuclease V involved_in ISO (MGI:5009179|PMID:12853604) RGD PMID:12853604 MGI:5009179 NCBI chr10:104,760,059...104,777,732
Ensembl chr10:104,760,137...104,775,969
JBrowse link
G Ep400 E1A binding protein p400 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,891,886...46,002,523
Ensembl chr12:45,891,916...45,998,861
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO MGI:2158940 (MGI:2446381|PMID:12466203)
(PMID:25538220)
RGD PMID:12466203 PMID:25538220 MGI:2446381 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (MGI:2179786|PMID:11950998) RGD PMID:11950998 MGI:2179786 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:2167179) RGD PMID:2167179 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in
acts_upstream_of_or_within
ISO UniProtKB:Q15554 (PMID:17055345), (PMID:19596235)
MGI:3028660 (MGI:3027419|PMID:14729965)
RGD PMID:14729965 PMID:17055345 PMID:19596235 MGI:3027419 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease acts_upstream_of_or_within ISO MGI:3043589 (MGI:3041918|PMID:15082767) RGD PMID:15082767 MGI:3041918 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in
acts_upstream_of_or_within
ISO (PMID:26218421)
MGI:1097693|MGI:1932102 (MGI:1861042|PMID:10806208), (MGI:3715683|PMID:17213818), (MGI:3759387|PMID:12447686)
RGD PMID:10806208 PMID:12447686 PMID:17213818 PMID:26218421 MGI:1861042 MGI:3715683 MGI:3759387 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:154,335,558...154,519,006
Ensembl chr 3:154,335,400...154,518,793
JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:22,172,275...22,415,978
Ensembl chr 1:22,172,275...22,415,976
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603073) RGD PMID:20603073 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fancd2 FA complementation group D2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Fanci FA complementation group I involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:133,327,264...133,383,661
Ensembl chr 1:133,327,297...133,383,640
JBrowse link
G Fancl FA complementation group L involved_in IBA
ISO
PMID:21873635
(PMID:16916645)
RGD PMID:16916645 PMID:21873635 RGD:13792537 NCBI chr14:100,249,733...100,317,958
Ensembl chr14:100,248,875...100,314,255
JBrowse link
G Fbxo6 F-box protein 6 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:158,576,729...158,582,520
Ensembl chr 5:158,576,759...158,582,525
JBrowse link
G Fbxw7 F-box and WD repeat domain containing 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:170,150,552...170,310,698
Ensembl chr 2:170,149,694...170,309,941
JBrowse link
G Fen1 flap structure-specific endonuclease 1 acts_upstream_of_or_within ISO MGI:2670036 (MGI:2668283|PMID:12861020) RGD PMID:12861020 MGI:2668283 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Fh fumarate hydratase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5602914|PMID:24813610)
(PMID:24813610)
UniProt
RGD
PMID:24813610 GO_REF:0000024 MGI:5602914 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050
JBrowse link
G Foxm1 forkhead box M1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:161,639,561...161,652,012
Ensembl chr 4:161,638,816...161,650,684
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:97,321,401...97,349,455
Ensembl chr 1:97,321,394...97,349,455
JBrowse link
G H2ax H2A.X variant histone acts_upstream_of_or_within ISO MGI:2156048 (MGI:2179182|PMID:11934988), (MGI:3053255|PMID:15364958) RGD PMID:11934988 PMID:15364958 MGI:2179182 MGI:3053255 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Hdac10 histone deacetylase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:120,199,126...120,205,850
Ensembl chr 7:120,199,129...120,204,228
JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within ISO MGI:1890508 (MGI:5139938|PMID:21746928) RGD PMID:21746928 MGI:5139938 NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:909,581...929,195
Ensembl chr 9:909,614...929,186
JBrowse link
G Hinfp histone H4 transcription factor involved_in ISO (PMID:17974976) RGD PMID:17974976 NCBI chr 8:44,634,333...44,644,288
Ensembl chr 8:44,634,333...44,641,000
JBrowse link
G Hltf helicase-like transcription factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:102,549,724...102,609,492
Ensembl chr 2:102,549,724...102,609,327
JBrowse link
G Hmgb1 high mobility group box 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb1l1 high mobility group box 1-like 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:55,045,885...55,047,145
Ensembl chr19:55,045,869...55,047,145
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A acts_upstream_of_or_within ISO MGI:3028843 (MGI:3027215|PMID:14701760) RGD PMID:14701760 MGI:3027215
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:20,871,278...21,001,378
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Inip INTS3 and NABP interacting protein involved_in IBA
ISO
PMID:21873635
(PMID:19605351)
RGD PMID:19605351 PMID:21873635 RGD:13792537 NCBI chr 5:74,648,392...74,662,628
Ensembl chr 5:74,648,392...74,662,628
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ino80c INO80 complex subunit C involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:15,378,764...15,398,574
Ensembl chr18:15,378,770...15,393,403
JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,461,406...181,472,059
Ensembl chr 1:181,461,408...181,472,469
JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO (PMID:19605351), (PMID:19683501) RGD PMID:19605351 PMID:19683501 NCBI chr 2:175,859,421...175,911,683
Ensembl chr 2:175,859,440...175,911,709
JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
JBrowse link
G Kif1b kinesin family member 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,607,697...159,742,778
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
G Kif22 kinesin family member 22 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:181,635,347...181,650,351
Ensembl chr 1:181,635,183...181,650,401
JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:201,000,444...201,049,819
Ensembl chr 1:201,000,444...201,049,819
JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in ISO
ISS
(PMID:28114273)
GO_REF:0000024
RGD
UniProt
PMID:28114273 GO_REF:0000024 NCBI chr 1:69,099,531...69,107,145
Ensembl chr 1:69,099,539...69,107,145
JBrowse link
G Lig1 DNA ligase 1 involved_in
NOT|acts_upstream_of_or_within
IDA
IEA
ISO
GO_REF:0000117
MGI:2179196 (MGI:2178155|PMID:11896201)
(MGI:4943978|PMID:21390131)
UniProt
RGD
PMID:11896201 PMID:21390131 PMID:1730240 GO_REF:0000117 MGI:2178155 MGI:4943978, RGD:724410 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig4 DNA ligase 4 acts_upstream_of_or_within ISO MGI:1857732 (MGI:3037169|PMID:11779495), (MGI:4943978|PMID:21390131) RGD PMID:11779495 PMID:21390131 MGI:3037169 MGI:4943978 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G LOC108350839 high mobility group protein B1-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:91,306,902...91,309,095 JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:34,028,487...34,030,715
Ensembl chr16:34,028,446...34,030,648
JBrowse link
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:148,893,049...148,904,833
Ensembl chr 4:148,894,280...148,904,982
JBrowse link
G Mdc1 mediator of DNA damage checkpoint 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:2,893,693...2,912,394
Ensembl chr20:2,895,505...2,910,240
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2677087|PMID:13679151)
RGD PMID:13679151 PMID:21873635 MGI:2677087, RGD:13792537 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO MGI:1858054|MGI:1930998 (MGI:2677087|PMID:13679151), (MGI:3513725|PMID:15480418) RGD PMID:13679151 PMID:15480418 MGI:2677087 MGI:3513725 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component involved_in ISO (PMID:22678362) RGD PMID:22678362 NCBI chr 1:240,757,279...240,794,291
Ensembl chr 1:240,757,282...240,794,288
JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:100,082,562...100,093,658
Ensembl chr  X:100,082,404...100,093,728
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
ISO (PMID:8942985)
(MGI:2667543|PMID:12687013)
RGD PMID:8942985 PMID:12687013 MGI:2667543 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 involved_in ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh6 mutS homolog 6 involved_in ISO (PMID:8942985) RGD PMID:8942985 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in ISO (PMID:19596235) RGD PMID:19596235 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19683501)
UniProt
RGD
PMID:19683501 GO_REF:0000024 NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107
JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in ISO
ISS
(PMID:18449195), (PMID:19683501)
GO_REF:0000024
(MGI:5629774|PMID:25589350)
RGD
UniProt
PMID:18449195 PMID:19683501 PMID:25589350 GO_REF:0000024 MGI:5629774 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027
JBrowse link
G Neil1 nei-like DNA glycosylase 1 acts_upstream_of_or_within ISO (MGI:2389521|PMID:12200441) RGD PMID:12200441 MGI:2389521 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258
JBrowse link
G Nono non-POU domain containing, octamer-binding involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952
JBrowse link
G Nop53 NOP53 ribosome biogenesis factor involved_in ISO (PMID:21741933) RGD PMID:21741933 NCBI chr 1:76,629,084...76,636,902
Ensembl chr 1:76,629,069...76,636,902
JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO
ISS
(PMID:19188445)
GO_REF:0000024
RGD
UniProt
PMID:19188445 GO_REF:0000024 NCBI chr10:17,741,512...17,751,626
Ensembl chr10:17,739,941...17,751,645
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce3 NSE3 homolog, SMC5-SMC6 complex component involved_in ISO (PMID:27427983) RGD PMID:27427983 NCBI chr 1:118,401,302...118,402,629 JBrowse link
G Nsmce4a NSE4 homolog A, SMC5-SMC6 complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:185,102,075...185,109,166
Ensembl chr 1:185,094,360...185,109,166
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within ISO MGI:1100494|MGI:2386212|MGI:2386943 (MGI:2150199|PMID:11532868), (MGI:2668786|PMID:12874039), (MGI:3715683|PMID:17213818), (MGI:3759387|PMID:12447686) RGD PMID:11532868 PMID:12447686 PMID:12874039 PMID:17213818 MGI:2150199 MGI:2668786 MGI:3715683 MGI:3759387 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:204,387,215...204,395,495
Ensembl chr 1:204,387,215...204,395,483
JBrowse link
G Pagr1 Paxip1-associated glutamate-rich protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:181,622,708...181,624,996 JBrowse link
G Park7 Parkinsonism associated deglycase involved_in ISO
ISS
(PMID:28596309)
GO_REF:0000024
RGD
UniProt
PMID:28596309 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970
JBrowse link
G Parpbp PARP1 binding protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:22,511,427...22,580,834
Ensembl chr 7:22,511,427...22,573,695
JBrowse link
G Pds5a PDS5 cohesin associated factor A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669
JBrowse link
G Pds5b PDS5 cohesin associated factor B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596
JBrowse link
G Pgd phosphogluconate dehydrogenase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:159,582,746...159,598,945
Ensembl chr 5:159,561,271...159,742,778
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:66,110,641...66,120,202
Ensembl chr 8:66,111,072...66,120,200
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component acts_upstream_of_or_within ISO MGI:1857947 (MGI:3513725|PMID:15480418) RGD PMID:15480418 MGI:3513725 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IBA
ISO
PMID:21873635
UniProtKB:J7Q8E6|UniProtKB:J7QRV0 (PMID:10446192)
RGD PMID:10446192 PMID:21873635 RGD:13792537 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in
NOT|involved_in
ISO
ISS
(PMID:11470886)
GO_REF:0000024
(PMID:3335506)
RGD
UniProt
PMID:3335506 PMID:11470886 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008
JBrowse link
G Polk DNA polymerase kappa involved_in
acts_upstream_of_or_within
ISO (PMID:28297716)
MGI:2445458 (MGI:2445277|PMID:12555660)
RGD PMID:12555660 PMID:28297716 MGI:2445277 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Polq DNA polymerase theta acts_upstream_of_or_within ISO MGI:107202|MGI:2656007 (MGI:2654407|PMID:12663541), (MGI:3511081|PMID:15542845) RGD PMID:12663541 PMID:15542845 MGI:2654407 MGI:3511081 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Psme4 proteasome activator subunit 4 involved_in ISO (MGI:5494329|PMID:23706739) RGD PMID:23706739 MGI:5494329 NCBI chr14:104,505,716...104,609,410
Ensembl chr14:104,505,716...104,609,408
JBrowse link
G Pttg1 PTTG1 regulator of sister chromatid separation, securin involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:27,893,466...27,904,965
Ensembl chr10:27,893,689...27,904,837
JBrowse link
G Pwwp3a PWWP domain containing 3A, DNA repair factor involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20347427)
UniProt
RGD
PMID:20347427 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:9,465,180...9,482,053
Ensembl chr 7:9,465,195...9,481,966
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689
JBrowse link
G Rad17 RAD17 checkpoint clamp loader component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:31,764,260...31,794,542
Ensembl chr 2:31,764,261...31,794,072
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in ISS
ISO
GO_REF:0000024
(PMID:9705271)
UniProt
RGD
PMID:9705271 GO_REF:0000024 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:19451272) RGD PMID:19451272 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad9a RAD9 checkpoint clamp component A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,488,511...201,553,582
Ensembl chr 1:201,487,136...201,553,608
JBrowse link
G Rad9b RAD9 checkpoint clamp component B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:34,217,868...34,248,380
Ensembl chr12:34,218,024...34,248,372
JBrowse link
G Recql RecQ like helicase involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:22973052)
UniProt
RGD
PMID:22973052 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in ISO (PMID:21926160) RGD PMID:21926160 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit acts_upstream_of_or_within ISO MGI:2183197 (MGI:2176643|PMID:11884603) RGD PMID:11884603 MGI:2176643 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) RGD PMID:21602889 NCBI chr 3:10,280,654...10,291,003
Ensembl chr 3:10,280,654...10,290,996
JBrowse link
G Rfc1 replication factor C subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:42,966,279...43,041,372
Ensembl chr14:42,966,324...43,041,370
JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,120,449...22,133,576
Ensembl chr12:22,120,010...22,133,557
JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:1,000,987...1,011,778
Ensembl chr12:1,000,994...1,011,778
JBrowse link
G Rfc4 replication factor C subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:77,749,642...77,764,123
Ensembl chr11:77,749,638...77,764,122
JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,207,484...39,217,041
Ensembl chr12:39,207,484...39,217,312
JBrowse link
G RGD1560831 similar to 40S ribosomal protein S3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:51,559,683...51,560,522
Ensembl chr 3:51,559,683...51,560,524
JBrowse link
G RGD1563668 similar to High mobility group protein 1 (HMG-1) involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:39,768,658...39,769,408
Ensembl chr10:39,768,658...39,769,293
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:1,640,138...1,641,886
Ensembl chr  X:1,640,300...1,641,811
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:18469000), (PMID:20545304) RGD PMID:18469000 PMID:20545304 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa3 replication protein A3 involved_in ISO (PMID:20545304) RGD PMID:20545304 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Rpain RPA interacting protein acts_upstream_of_or_within ISO UniProtKB:P27694 (PMID:16135809) RGD PMID:16135809 NCBI chr10:55,692,410...55,699,910
Ensembl chr10:55,692,417...55,699,933
JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA
ISO
GO_REF:0000043
(PMID:19059439)
UniProt
RGD
PMID:19059439 GO_REF:0000043 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in ISO (PMID:11719458) RGD PMID:11719458 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B acts_upstream_of_or_within
involved_in
ISO MGI:2672883 (MGI:2670318|PMID:12858174)
(PMID:11719458)
RGD PMID:11719458 PMID:12858174 MGI:2670318 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:168,427,247...168,465,349
Ensembl chr 3:168,419,579...168,465,348
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:95,902,014...95,915,364
Ensembl chr 1:95,901,701...95,915,342
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6694658|PMID:32584788) RGD PMID:32584788 MGI:6694658 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Sirt7 sirtuin 7 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in ISO (PMID:19595721), (PMID:19595722), (PMID:19596235), (PMID:19596236) RGD PMID:19595721 PMID:19595722 PMID:19596235 PMID:19596236 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595722) RGD PMID:19595722 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:23911928) RGD PMID:23911928 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Smc1a structural maintenance of chromosomes 1A involved_in IEA GO_REF:0000002
GO_REF:0000043
InterPro
UniProt
GO_REF:0000002 GO_REF:0000043 NCBI chr  X:21,103,323...21,148,053
Ensembl chr  X:21,103,282...21,148,056
JBrowse link
G Smc3 structural maintenance of chromosomes 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IDA RGD PMID:12718542 RGD:2317001 NCBI chr 7:134,288,565...134,302,179
Ensembl chr 7:134,287,675...134,297,226
JBrowse link
G Ssrp1 structure specific recognition protein 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:70,124,371...70,134,481
Ensembl chr 3:70,118,655...70,134,482
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846
JBrowse link
G Taok1 TAO kinase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:62,373,076...62,465,295
Ensembl chr10:62,381,404...62,465,766
JBrowse link
G Taok3 TAO kinase 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:39,314,027...39,394,243
Ensembl chr12:39,314,027...39,461,244
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in
acts_upstream_of_or_within
ISO
IEA
(PMID:17948061)
GO_REF:0000043
(MGI:4943978|PMID:21390131)
RGD
UniProt
PMID:17948061 PMID:21390131 GO_REF:0000043 MGI:4943978 NCBI chr 6:119,163,192...119,231,029
Ensembl chr 6:119,163,166...119,231,021
JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:65,587,855...65,597,407
Ensembl chr 1:65,582,359...65,611,689
JBrowse link
G Timeless timeless circadian regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 acts_upstream_of_or_within ISO (MGI:3053255|PMID:15364958) RGD PMID:15364958 MGI:3053255 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Trex2 three prime repair exonuclease 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:151,151,862...151,153,470
Ensembl chr  X:151,151,864...151,153,479
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in ISO (PMID:17178852) RGD PMID:17178852 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:85,916,691...86,043,312
Ensembl chr 9:85,916,691...86,051,403
JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:23,993,046...24,010,710
Ensembl chr15:23,993,048...24,010,668
JBrowse link
G Ttf2 transcription termination factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:188,366,321...188,397,750
Ensembl chr 2:188,366,331...188,397,689
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A involved_in ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990 PMID:21873635 RGD:13792537 NCBI chr  X:116,114,339...116,125,076
Ensembl chr  X:116,113,875...116,125,070
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B involved_in ISO
IBA
UniProtKB:P06104 (PMID:1717990)
PMID:21873635
RGD PMID:1717990 PMID:21873635 RGD:13792537 NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665
JBrowse link
G Ube2d3 ubiquitin-conjugating enzyme E2D 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:223,868,397...223,899,606
Ensembl chr 2:223,868,730...223,898,081
JBrowse link
G Ube2t ubiquitin-conjugating enzyme E2T involved_in ISO (PMID:16916645) RGD PMID:16916645 NCBI chr13:46,403,352...46,413,854
Ensembl chr13:46,403,375...46,414,835
JBrowse link
G Ube2u ubiquitin conjugating enzyme E2 U involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:115,118,234...115,187,296
Ensembl chr 5:115,118,495...115,186,874
JBrowse link
G Ube2w ubiquitin-conjugating enzyme E2W involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:2,690,742...2,754,491
Ensembl chr 5:2,690,763...2,814,965
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:69,116,758...69,224,490
Ensembl chr 7:69,116,761...69,224,903
JBrowse link
G Ufl1 Ufm1-specific ligase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
JBrowse link
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 9:1,133,117...1,154,639
Ensembl chr 9:1,134,909...1,154,631
JBrowse link
G Ung uracil-DNA glycosylase TAS RGD PMID:12167490 RGD:634481 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16488880) RGD PMID:16488880 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568
JBrowse link
G Usp1 ubiquitin specific peptidase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:113,587,564...113,598,934
Ensembl chr 5:113,587,564...113,598,932
JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:47,972,858...48,014,900
Ensembl chr19:47,972,611...48,014,897
JBrowse link
G Usp28 ubiquitin specific peptidase 28 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:49,325,766...49,386,229
Ensembl chr 8:49,325,867...49,386,229
JBrowse link
G Usp3 ubiquitin specific peptidase 3 involved_in ISO (PMID:17980597) RGD PMID:17980597 NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111
JBrowse link
G Usp45 ubiquitin specific peptidase 45 acts_upstream_of_or_within ISO (PMID:25538220) RGD PMID:25538220 NCBI chr 5:35,318,621...35,392,090
Ensembl chr 5:35,318,635...35,389,420
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:22542840)
(MGI:5644018|PMID:22542840)
RGD PMID:22542840 MGI:5644018 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Vcp valosin-containing protein involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:20,478,310...20,523,106
Ensembl chr15:20,489,291...20,523,096
JBrowse link
G Wrap53 WD repeat containing, antisense to TP53 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in
acts_upstream_of_or_within
ISO (PMID:1601884)
MGI:1857939 (MGI:1270007|PMID:9661901), (MGI:2179786|PMID:11950998)
RGD PMID:1601884 PMID:9661901 PMID:11950998 MGI:1270007 MGI:2179786 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor acts_upstream_of_or_within ISO MGI:1859840 (MGI:2445277|PMID:12555660) RGD PMID:12555660 MGI:2445277 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 acts_upstream_of_or_within ISO MGI:3836442 (MGI:4359093|PMID:19633665) RGD PMID:19633665 MGI:4359093 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in ISO (PMID:10422536) RGD PMID:10422536 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (PMID:24657165) RGD PMID:24657165 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:1931221|MGI:2180033 (MGI:3583382|PMID:15980864), (MGI:5139938|PMID:21746928) RGD PMID:15980864 PMID:21746928 MGI:3583382 MGI:5139938 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 involved_in ISO
IBA
(PMID:22759634)
PMID:21873635
RGD PMID:22759634 PMID:21873635 RGD:13792537 NCBI chr13:39,440,653...39,595,782
Ensembl chr13:39,440,889...39,595,670
JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO
IBA
(PMID:8932386)
PMID:21873635
RGD PMID:8932386 PMID:21873635 RGD:13792537 NCBI chr15:24,144,595...24,146,785
Ensembl chr15:24,144,362...24,146,785
JBrowse link
G Apex2 apurinic/apyrimidinic endodeoxyribonuclease 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:19,425,684...19,508,459
Ensembl chr  X:19,487,419...19,508,439
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
IEA
(PMID:18995831)
GO_REF:0000107
RGD
Ensembl
PMID:18995831 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9973627) RGD PMID:9973627 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:206,845,126...206,849,821
Ensembl chr 1:206,844,884...206,850,003
JBrowse link
G Hmga1 high mobility group AT-hook 1 involved_in ISO (PMID:19465398) RGD PMID:19465398 NCBI chr20:5,611,088...5,618,755
Ensembl chr20:5,611,694...5,618,752
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:19465398)
GO_REF:0000024
RGD
UniProt
PMID:19465398 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (MGI:3722031|PMID:17803946) RGD PMID:17803946 MGI:3722031 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:19713937)
UniProt
RGD
PMID:19713937 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:20,871,278...21,001,378
Ensembl chr  X:20,873,795...21,001,262
JBrowse link
G Lig1 DNA ligase 1 involved_in ISO (PMID:19589734) RGD PMID:19589734 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Mpg N-methylpurine-DNA glycosylase involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000002
GO_REF:0000107
MGI:2148592|MGI:2675730 (MGI:2181327|PMID:9371767), (MGI:3028824|PMID:15177041)
PMID:21873635
InterPro
Ensembl
RGD
PMID:9371767 PMID:15177041 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:2181327 MGI:3028824, RGD:13792537 NCBI chr10:15,396,246...15,402,528
Ensembl chr10:15,395,782...15,402,520
JBrowse link
G Mutyh mutY DNA glycosylase involved_in IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146
JBrowse link
G Neil1 nei-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(PMID:17611195)
RGD PMID:17611195 PMID:21873635 RGD:13792537 NCBI chr 8:57,550,142...57,556,884
Ensembl chr 8:57,550,147...57,556,258
JBrowse link
G Neil2 nei-like DNA glycosylase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:37,444,676...37,454,863
Ensembl chr15:37,445,381...37,454,863
JBrowse link
G Neil3 nei-like DNA glycosylase 3 involved_in ISO
IBA
(PMID:23755964)
(MGI:4440390|PMID:20185759)
PMID:21873635
RGD PMID:20185759 PMID:23755964 PMID:21873635 MGI:4440390, RGD:13792537 NCBI chr16:38,359,305...38,418,528
Ensembl chr16:38,359,371...38,418,527
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase acts_upstream_of_or_within IDA
ISO
MGI:2386943 (MGI:1349233|PMID:10570187), (MGI:894433|PMID:9207108) RGD PMID:9207108 PMID:10570187 PMID:9801319 MGI:1349233 MGI:894433, RGD:729091 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:2181257 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 acts_upstream_of_or_within ISO (MGI:2181257|PMID:11948190) RGD PMID:11948190 MGI:2181257 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Polb DNA polymerase beta involved_in TAS
IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:16600869), (PMID:21362556)
UniProt
RGD
PMID:16600869 PMID:21362556 PMID:12388548 PMID:21873635 GO_REF:0000024, RGD:633643, RGD:13792537 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Polq DNA polymerase theta involved_in ISO (PMID:19188258) RGD PMID:19188258 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:9765279) RGD PMID:9765279 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in NAS
ISS
ISO
GO_REF:0000024
(PMID:9765279)
UniProt
RGD
PMID:9765279 PMID:9045683 GO_REF:0000024, RGD:729744 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IBA
ISO
PMID:21873635
(PMID:9765279)
RGD PMID:9765279 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:3663736|PMID:16439206) RGD PMID:16439206 MGI:3663736 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 involved_in ISO
IDA
(PMID:12161446)
PMID:12718543
RGD PMID:12161446 PMID:12718543 RGD:634191 NCBI chr 7:134,288,565...134,302,179
Ensembl chr 7:134,287,675...134,297,226
JBrowse link
G Tdg thymine-DNA glycosylase involved_in ISO (PMID:21862836), (PMID:22327402)
(MGI:5287540|PMID:21817016)
RGD PMID:21817016 PMID:21862836 PMID:22327402 MGI:5287540 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Ung uracil-DNA glycosylase involved_in IDA
ISO
TAS
(PMID:12161446) RGD PMID:12161446 PMID:12167490 PMID:11292851 PMID:15297456 RGD:634481, RGD:1599704, RGD:1599703 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
G Usp47 ubiquitin specific peptidase 47 involved_in ISO (PMID:21362556) RGD PMID:21362556 NCBI chr 1:166,152,104...166,235,312
Ensembl chr 1:166,152,199...166,235,312
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17611195) RGD PMID:17611195 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xpa XPA, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,431,673...60,476,438
Ensembl chr 5:60,431,673...60,475,726
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in TAS
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:11056294 PMID:21873635 PMID:17412650 RGD:727220, RGD:13792537, RGD:2302580 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:9927729) RGD PMID:9927729 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Nthl1 nth-like DNA glycosylase 1 involved_in IBA
ISO
PMID:21873635
(PMID:15358233), (PMID:9927729)
RGD PMID:9927729 PMID:15358233 PMID:21873635 RGD:13792537 NCBI chr10:13,655,791...13,661,958
Ensembl chr10:13,655,785...13,661,957
JBrowse link
G Ogg1 8-oxoguanine DNA glycosylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,474,701...146,481,959
Ensembl chr 4:146,474,750...146,484,766
JBrowse link
G Tdg thymine-DNA glycosylase involved_in IBA
ISO
PMID:21873635
(PMID:11889051), (PMID:18512959)
RGD PMID:11889051 PMID:18512959 PMID:21873635 RGD:13792537 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ung uracil-DNA glycosylase involved_in ISO (PMID:18973764) RGD PMID:18973764 NCBI chr12:42,485,276...42,494,217
Ensembl chr12:42,485,276...42,494,206
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig3 DNA ligase 3 involved_in IDA
ISO
IBA
(PMID:24674627)
(PMID:19589734)
PMID:21873635
RGD PMID:19589734 PMID:24674627 PMID:17412650 PMID:21873635 RGD:2302580, RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcna proliferating cell nuclear antigen acts_upstream_of_or_within ISO (MGI:3045901|PMID:15177179) RGD PMID:15177179 MGI:3045901 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within IDA
ISO
(MGI:3045901|PMID:15177179) RGD PMID:15177179 PMID:17412650 MGI:3045901, RGD:2302580 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:3045901|PMID:15177179)
(PMID:10559260), (PMID:10559261)
Ensembl
RGD
PMID:10559260 PMID:10559261 PMID:15177179 PMID:21873635 GO_REF:0000107 MGI:3045901, RGD:13792537 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO
IBA
(PMID:10559260)
PMID:21873635
RGD PMID:10559260 PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit acts_upstream_of_or_within ISO (PMID:15177179) RGD PMID:15177179 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS
(PMID:19806195)
GO_REF:0000024
RGD
UniProt
PMID:19806195 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:18603530) RGD PMID:18603530 NCBI chr 6:107,068,309...107,088,779
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Alkbh2 alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase involved_in IBA
ISO
PMID:21873635
(MGI:3796299|PMID:18519673)
(PMID:18432238), (PMID:20714506)
RGD PMID:18432238 PMID:18519673 PMID:20714506 PMID:21873635 MGI:3796299, RGD:13792537 NCBI chr12:42,494,187...42,500,929
Ensembl chr12:42,496,300...42,500,914
JBrowse link
G Alkbh3 alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase involved_in ISS
ISO
GO_REF:0000024
(PMID:16858410), (PMID:20714506), (PMID:22055184)
(PMID:16858410), (PMID:22055184)
UniProt
RGD
PMID:16858410 PMID:20714506 PMID:22055184 GO_REF:0000024 NCBI chr 3:79,939,515...79,972,820
Ensembl chr 3:79,939,600...79,972,000
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 involved_in ISO
ISS
(PMID:22055184)
GO_REF:0000024
RGD
UniProt
PMID:22055184 GO_REF:0000024 NCBI chr20:53,510,137...53,795,446
Ensembl chr20:53,510,184...53,790,165
JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:3817348|PMID:18775698)
(PMID:18775698), (PMID:20376003)
UniProt
Ensembl
RGD
PMID:18775698 PMID:20376003 GO_REF:0000024 GO_REF:0000107 MGI:3817348 NCBI chr19:15,284,898...15,692,142
Ensembl chr19:15,349,696...15,692,083
JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase acts_upstream_of_or_within IDA
ISO
(MGI:50172|PMID:1554415) RGD PMID:1554415 PMID:15025514 MGI:50172, RGD:2316914 NCBI chr 1:191,710,980...191,937,760
Ensembl chr 1:191,710,930...191,937,756
JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in ISO (PMID:21325134) RGD PMID:21325134 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21325134)
UniProt
Ensembl
RGD
PMID:21325134 GO_REF:0000024 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:21491884) RGD PMID:21491884 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` involved_in ISO
ISS
(PMID:22960744)
GO_REF:0000024
RGD
UniProt
PMID:22960744 GO_REF:0000024 NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
JBrowse link
G Ube2n ubiquitin-conjugating enzyme E2N involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:30,154,330...30,184,373
Ensembl chr 7:30,154,616...30,184,355
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr11:85,304,528...85,338,430
Ensembl chr11:85,304,526...85,336,369
JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Helq helicase, POLQ-like involved_in ISO
IEA
(PMID:34937945)
GO_REF:0000107
RGD
Ensembl
PMID:34937945 GO_REF:0000107 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within
ISO (MGI:5619739|PMID:22912580)
(PMID:19506022)
RGD PMID:19506022 PMID:22912580 MGI:5619739 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IBA
IEA
ISO
PMID:21873635
GO_REF:0000002
(PMID:18716619), (PMID:19202191)
InterPro
RGD
PMID:18716619 PMID:19202191 PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rnf138 ring finger protein 138 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26502057)
UniProt
RGD
PMID:26502057 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in ISO (PMID:19595721) RGD PMID:19595721 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721) RGD PMID:19595721 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lig4 DNA ligase 4 acts_upstream_of_or_within
involved_in
ISO MGI:1857732 (MGI:1312981|PMID:9823897)
(PMID:12517771), (PMID:17290226)
RGD PMID:9823897 PMID:12517771 PMID:17290226 MGI:1312981 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISO (PMID:19056826) RGD PMID:19056826 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:15385968) RGD PMID:15385968 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in IBA
ISO
PMID:21873635
(PMID:12517771), (PMID:15385968), (PMID:17290226), (PMID:28453785)
RGD PMID:12517771 PMID:15385968 PMID:17290226 PMID:28453785 PMID:21873635 RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmc1 DNA meiotic recombinase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO
IBA
(PMID:26681308)
PMID:21873635
RGD PMID:26681308 PMID:21873635 RGD:13792537 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:2447628 (MGI:2445645|PMID:12429860)
GO_REF:0000107
RGD
Ensembl
PMID:12429860 PMID:21873635 GO_REF:0000107 MGI:2445645, RGD:13792537 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2d cyclin dependent kinase inhibitor 2D involved_in ISO (PMID:15750620) RGD PMID:15750620 NCBI chr 8:19,831,874...19,834,640
Ensembl chr 8:19,831,866...19,834,674
JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31467087)
UniProt
Ensembl
RGD
PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO (PMID:11470886) RGD PMID:11470886 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISS
ISO
GO_REF:0000024
(PMID:1730053), (PMID:24191025), (PMID:3335506)
UniProt
RGD
PMID:1730053 PMID:3335506 PMID:24191025 GO_REF:0000024 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit involved_in ISO (PMID:1730053) RGD PMID:1730053 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polh DNA polymerase eta involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Sirt1 sirtuin 1 involved_in ISO (MGI:5297784|PMID:17612497) RGD PMID:17612497 MGI:5297784 NCBI chr20:25,307,143...25,329,260
Ensembl chr20:25,306,917...25,329,260
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:17563354) RGD PMID:17563354 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15670210)
UniProt
Ensembl
RGD
PMID:15670210 GO_REF:0000024 GO_REF:0000107 NCBI chr17:31,621,410...31,641,659
Ensembl chr17:31,621,411...31,641,659
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pola1 DNA polymerase alpha 1, catalytic subunit NOT|involved_in ISO
ISS
(PMID:1730053)
GO_REF:0000024
RGD
UniProt
PMID:1730053 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (MGI:5562498|PMID:23993650) RGD PMID:23993650 MGI:5562498 NCBI chr 8:109,706,613...109,707,913
Ensembl chr 8:109,706,613...109,708,796
JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:17525340), (PMID:17643121), (PMID:19261748)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17525340 PMID:17643121 PMID:19261748 GO_REF:0000024 GO_REF:0000107 NCBI chr14:8,796,281...8,810,625
Ensembl chr14:8,796,266...8,810,622
JBrowse link
G Actr5 actin related protein 5 involved_in ISO (PMID:19014934) RGD PMID:19014934 NCBI chr 3:147,282,461...147,296,110
Ensembl chr 3:147,282,624...147,296,110
JBrowse link
G Actr8 actin related protein 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:5,164,131...5,186,353
Ensembl chr16:5,164,129...5,178,577
JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in IMP
ISO
PMID:19282473
(MGI:3698695|PMID:17121854)
RGD PMID:17121854 PMID:19282473 MGI:3698695, RGD:8553580 NCBI chr 1:159,896,889...159,920,505
Ensembl chr 1:159,896,880...159,920,627
JBrowse link
G Aplf aprataxin and PNKP like factor involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17396150)
MGI:4128102 (MGI:4887518|PMID:21211721)
PMID:21873635
RGD PMID:17396150 PMID:21211721 PMID:21873635 MGI:4887518, RGD:13792537 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Aptx aprataxin involved_in IBA
ISO
PMID:21873635
(PMID:17519253)
RGD PMID:17519253 PMID:21873635 RGD:13792537 NCBI chr 5:55,798,896...55,822,963
Ensembl chr 5:55,800,248...55,822,855
JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in ISO
ISS
IBA
(PMID:19261746), (PMID:19261748), (PMID:19261749)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:19261746 PMID:19261748 PMID:19261749 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr16:18,068,830...18,074,938
Ensembl chr16:18,068,884...18,074,923
JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:19261748)
UniProt
RGD
PMID:19261748 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:24,369,021...24,833,335
Ensembl chr 6:24,369,022...24,833,951
JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in ISO (PMID:17525340), (PMID:17643121), (PMID:19261748), (PMID:22186889)
(MGI:5545964|PMID:22186889)
RGD PMID:17525340 PMID:17643121 PMID:19261748 PMID:22186889 MGI:5545964 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
ISO (PMID:16845393)
MGI:2156556|MGI:2176173|MGI:2177226 (MGI:1100157|PMID:9398843), (MGI:3714678|PMID:17476307)
RGD PMID:9398843 PMID:16845393 PMID:17476307 MGI:1100157 MGI:3714678 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 involved_in ISO
ISS
IBA
(PMID:17525341), (PMID:19261746), (PMID:19261748)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:17525341 PMID:19261746 PMID:19261748 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:1,986,942...1,989,484
Ensembl chr 9:1,986,575...1,991,080
JBrowse link
G Cdca5 cell division cycle associated 5 involved_in ISO
IBA
(PMID:17349791)
PMID:21873635
RGD PMID:17349791 PMID:21873635 RGD:13792537 NCBI chr 1:203,378,550...203,392,027
Ensembl chr 1:203,378,577...203,392,023
JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:18317453) RGD PMID:18317453 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286
JBrowse link
G Dclre1c DNA cross-link repair 1C acts_upstream_of_or_within ISO (MGI:3514096|PMID:12615897) RGD PMID:12615897 MGI:3514096 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Ddx1 DEAD-box helicase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18710941)
UniProt
RGD
PMID:18710941 GO_REF:0000024 NCBI chr 6:35,996,469...36,027,340
Ensembl chr 6:35,996,469...36,027,365
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L involved_in ISO (PMID:23230272) RGD PMID:23230272 NCBI chr11:64,814,926...64,824,538
Ensembl chr11:64,814,926...64,824,538
JBrowse link
G Eme1 essential meiotic structure-specific endonuclease 1 involved_in ISO
IBA
(PMID:18413719)
PMID:21873635
RGD PMID:18413719 PMID:21873635 RGD:13792537 NCBI chr10:79,586,736...79,595,515
Ensembl chr10:79,586,729...79,595,435
JBrowse link
G Eme2 essential meiotic structure-specific endonuclease subunit 2 involved_in ISO
IBA
(PMID:17289582)
PMID:21873635
RGD PMID:17289582 PMID:21873635 RGD:13792537 NCBI chr10:13,913,216...13,915,991
Ensembl chr10:13,913,221...13,915,968
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit NOT|acts_upstream_of_or_within ISO MGI:2183944 (MGI:2153690|PMID:11707424)
MGI:2158940|MGI:2183944|MGI:3617449 (MGI:3047512|PMID:15199134), (MGI:3770581|PMID:17912366)
RGD PMID:11707424 PMID:15199134 PMID:17912366 MGI:2153690 MGI:3047512 MGI:3770581 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 acts_upstream_of_or_within ISO MGI:5308063 (MGI:5493398|PMID:22614755) RGD PMID:22614755 MGI:5493398 NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (PMID:19234442) RGD PMID:19234442 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 involved_in ISO (PMID:19234442) RGD PMID:19234442 NCBI chr 5:144,806,523...144,934,522
Ensembl chr 5:144,806,577...144,934,518
JBrowse link
G Ggn gametogenetin acts_upstream_of_or_within ISO MGI:5503309 (MGI:5502508|PMID:23451117) RGD PMID:23451117 MGI:5502508 NCBI chr 1:84,470,488...84,474,120
Ensembl chr 1:84,470,508...84,474,114
JBrowse link
G Haus3 HAUS augmin-like complex, subunit 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:76,580,549...76,599,542
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Hpf1 histone PARylation factor 1 involved_in ISO (PMID:32939087) RGD PMID:32939087 NCBI chr16:29,203,749...29,219,651
Ensembl chr16:29,183,256...29,219,716
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:20687897) RGD PMID:20687897 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISO
ISS
(PMID:10966108)
(PMID:10966108), (PMID:26438602)
GO_REF:0000024
RGD
UniProt
PMID:10966108 PMID:26438602 GO_REF:0000024 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Lig3 DNA ligase 3 involved_in ISO (PMID:19589734) RGD PMID:19589734 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
ISO (PMID:19589734), (PMID:9242410)
MGI:104517|MGI:1857732|MGI:3714783|MGI:894697 (MGI:2445902|PMID:12531011), (MGI:3043875|PMID:15175260), (MGI:3715270|PMID:17554302)
RGD PMID:9242410 PMID:12531011 PMID:15175260 PMID:17554302 PMID:19589734 MGI:2445902 MGI:3043875 MGI:3715270 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G LOC102557137 E3 ubiquitin-protein ligase RNF168-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:40,065,873...40,067,029
Ensembl chr  X:40,065,873...40,067,207
JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO
ISS
(PMID:15988022)
GO_REF:0000024
RGD
UniProt
PMID:15988022 GO_REF:0000024 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Marf1 meiosis regulator and mRNA stability factor 1 acts_upstream_of_or_within ISO MGI:3512917 (MGI:5461283|PMID:23090997) RGD PMID:23090997 MGI:5461283 NCBI chr10:888,053...932,760
Ensembl chr10:888,076...932,753
JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) RGD PMID:26742488 MGI:5770021 NCBI chr10:87,628,807...87,646,485
Ensembl chr10:87,628,875...87,646,752
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease acts_upstream_of_or_within ISO MGI:3027036 (MGI:3707920|PMID:17291760) RGD PMID:17291760 MGI:3707920 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1858055 (MGI:3770581|PMID:17912366)
Ensembl
RGD
PMID:17912366 GO_REF:0000107 MGI:3770581 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Mta1 metastasis associated 1 involved_in IBA
ISO
ISS
PMID:21873635
(MGI:4366101|PMID:19805145)
GO_REF:0000024
(PMID:19805145)
RGD
UniProt
PMID:19805145 PMID:21873635 GO_REF:0000024 MGI:4366101, RGD:13792537 NCBI chr 6:132,178,608...132,217,641
Ensembl chr 6:132,178,853...132,217,641
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in ISO (PMID:17289582), (PMID:18413719) RGD PMID:17289582 PMID:18413719 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
G Nbn nibrin involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:9590181)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:9590181 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in
acts_upstream_of_or_within
ISO
IBA
ISS
(PMID:23230272)
(PMID:23230272), (PMID:27568560)
PMID:21873635
MGI:1891258 (MGI:4947917|PMID:21270334)
GO_REF:0000024
RGD
UniProt
PMID:21270334 PMID:23230272 PMID:27568560 PMID:21873635 GO_REF:0000024 MGI:4947917, RGD:13792537 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Parp2 poly (ADP-ribose) polymerase 2 involved_in ISO
IBA
(PMID:32939087)
PMID:21873635
RGD PMID:32939087 PMID:21873635 RGD:13792537 NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
JBrowse link
G Parp3 poly (ADP-ribose) polymerase family, member 3 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1340806 (MGI:4947917|PMID:21270334)
PMID:21873635
(PMID:21211721), (PMID:21270334)
RGD PMID:21211721 PMID:21270334 PMID:21873635 MGI:4947917, RGD:13792537 NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
JBrowse link
G Parp9 poly (ADP-ribose) polymerase family, member 9 involved_in ISO (PMID:23230272) RGD PMID:23230272 NCBI chr11:64,780,977...64,814,995
Ensembl chr11:64,780,981...64,815,455
JBrowse link
G Poln DNA polymerase nu involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Polq DNA polymerase theta involved_in ISO
IBA
(PMID:22135286)
PMID:21873635
RGD PMID:22135286 PMID:21873635 RGD:13792537 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:18710952)
MGI:1857113|MGI:2667593 (MGI:2155497|PMID:11751629), (MGI:2450507|PMID:12604618)
PMID:21873635
RGD PMID:11751629 PMID:12604618 PMID:18710952 PMID:21873635 MGI:2155497 MGI:2450507, RGD:13792537 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO MGI:5292341 (MGI:5288570|PMID:21743440) RGD PMID:21743440 MGI:5288570 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad50 RAD50 double strand break repair protein involved_in TAS
IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:9590181)
Ensembl
UniProt
RGD
PMID:9590181 PMID:10908350 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:68816, RGD:13792537 NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
JBrowse link
G Rad54l RAD54 like acts_upstream_of_or_within ISO MGI:1335098 (MGI:3043875|PMID:15175260) RGD PMID:15175260 MGI:3043875 NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070
JBrowse link
G Rec8 REC8 meiotic recombination protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Rnf168 ring finger protein 168 involved_in IEA
IBA
ISS
ISO
GO_REF:0000104
PMID:21873635
GO_REF:0000024
(PMID:19203578), (PMID:19203579), (PMID:22980979)
UniProt
RGD
PMID:19203578 PMID:19203579 PMID:22980979 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
JBrowse link
G Rnf169 ring finger protein 169 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
PMID:21873635
GO_REF:0000104
(PMID:18001824), (PMID:18001825), (PMID:22980979)
UniProt
RGD
PMID:18001824 PMID:18001825 PMID:22980979 PMID:21873635 GO_REF:0000024 GO_REF:0000104, RGD:13792537 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Setx senataxin involved_in ISO (PMID:17562789) RGD PMID:17562789 NCBI chr 3:12,428,091...12,480,801
Ensembl chr 3:12,427,635...12,480,803
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:21680843), (PMID:27568560) RGD PMID:21680843 PMID:27568560 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
JBrowse link
G Tdp1 tyrosyl-DNA phosphodiesterase 1 involved_in ISO
IBA
(PMID:12023295)
PMID:21873635
RGD PMID:12023295 PMID:21873635 RGD:13792537 NCBI chr 6:119,163,192...119,231,029
Ensembl chr 6:119,163,166...119,231,021
JBrowse link
G Tdp2 tyrosyl-DNA phosphodiesterase 2 involved_in IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000107
GO_REF:0000024
(PMID:19794497), (PMID:21030584)
Ensembl
UniProt
RGD
PMID:19794497 PMID:21030584 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr17:40,228,943...40,240,337
Ensembl chr17:40,228,947...40,240,313
JBrowse link
G Tnks1bp1 tankyrase 1 binding protein 1 involved_in ISO
IBA
(PMID:25749521)
PMID:21873635
RGD PMID:25749521 PMID:21873635 RGD:13792537 NCBI chr 3:70,135,335...70,160,071
Ensembl chr 3:70,137,837...70,160,038
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:1857989 (MGI:3770581|PMID:17912366) RGD PMID:17912366 MGI:3770581 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
G Trip13 thyroid hormone receptor interactor 13 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:4821667|PMID:20711356)
MGI:3719273 (MGI:3719060|PMID:17696610)
UniProt
RGD
PMID:17696610 PMID:20711356 GO_REF:0000024 MGI:3719060 MGI:4821667 NCBI chr 1:29,357,093...29,402,078
Ensembl chr 1:29,357,130...29,402,074
JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISS
IBA
ISO
IEA
GO_REF:0000024
PMID:21873635
(PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:17525340 PMID:17525341 PMID:17525342 PMID:17643121 PMID:19261748 More... GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr17:9,523,793...9,592,810
Ensembl chr17:9,527,794...9,592,799
JBrowse link
G Vcp valosin-containing protein involved_in ISS
ISO
GO_REF:0000024
(PMID:10855792), (PMID:22120668)
UniProt
RGD
PMID:10855792 PMID:22120668 GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Wrn WRN RecQ like helicase involved_in ISO (PMID:21639834) RGD PMID:21639834 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within
ISO (PMID:9242410)
MGI:1926771 (MGI:1913213|PMID:9875844), (MGI:2155497|PMID:11751629)
RGD PMID:9242410 PMID:9875844 PMID:11751629 MGI:1913213 MGI:2155497 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 acts_upstream_of_or_within
involved_in
NAS
ISO
MGI:1335098|MGI:2179987 (MGI:2445902|PMID:12531011)
(PMID:19581589)
RGD PMID:12531011 PMID:19581589 PMID:11966321 MGI:2445902, RGD:727219 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 acts_upstream_of_or_within TAS
ISO
MGI:2179954 (MGI:2155497|PMID:11751629) RGD PMID:11751629 PMID:11966321 MGI:2155497, RGD:727219 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4129733 (MGI:5700253|PMID:26490168)
RGD PMID:26490168 PMID:21873635 MGI:5700253, RGD:13792537 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Brme1 break repair meiotic recombinase recruitment factor 1 involved_in ISO (MGI:6443349|PMID:32463460), (MGI:6447091|PMID:32345962), (MGI:6448646|PMID:32460033) RGD PMID:32345962 PMID:32460033 PMID:32463460 MGI:6443349 MGI:6447091 MGI:6448646 NCBI chr19:23,990,049...24,011,774
Ensembl chr19:23,990,045...24,011,850
JBrowse link
G Fancd2 FA complementation group D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Hsf2bp heat shock transcription factor 2 binding protein involved_in ISO (MGI:6283956|PMID:30760716), (MGI:6443349|PMID:32463460), (MGI:6447091|PMID:32345962), (MGI:6456264|PMID:31242413) RGD PMID:30760716 PMID:31242413 PMID:32345962 PMID:32463460 MGI:6283956 MGI:6443349 MGI:6447091 MGI:6456264 NCBI chr20:10,035,562...10,123,059
Ensembl chr20:10,035,562...10,121,242
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:1349669|MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Morc2b microrchidia 2B involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:12,314,341...12,318,421
Ensembl chr 7:12,314,349...12,318,421
JBrowse link
G Prdm9 PR/SET domain 9 involved_in ISS
ISO
GO_REF:0000024
(MGI:6102131|PMID:25894966), (MGI:6114980|PMID:29478809)
UniProt
RGD
PMID:25894966 PMID:29478809 GO_REF:0000024 MGI:6102131 MGI:6114980 NCBI chr 1:56,505,579...56,525,726
Ensembl chr 1:56,505,579...56,525,652
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks acts_upstream_of_or_within ISO MGI:3045334 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helq helicase, POLQ-like involved_in ISO
IEA
(PMID:34937945)
GO_REF:0000107
RGD
Ensembl
PMID:34937945 GO_REF:0000107 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Hmces 5-hydroxymethylcytosine binding, ES cell specific involved_in ISO (MGI:6393148|PMID:31806351) RGD PMID:31806351 MGI:6393148 NCBI chr 4:120,392,812...120,415,616
Ensembl chr 4:120,366,542...120,415,616
JBrowse link
G Lig3 DNA ligase 3 involved_in ISO
IBA
UniProtKB:P13010 (PMID:24837021)
(MGI:5014103|PMID:21655080)
PMID:21873635
RGD PMID:21655080 PMID:24837021 PMID:21873635 MGI:5014103, RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Polq DNA polymerase theta involved_in ISO
IBA
(PMID:25643323)
PMID:21873635
(MGI:5621198|PMID:25642960)
RGD PMID:25642960 PMID:25643323 PMID:21873635 MGI:5621198, RGD:13792537 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc45 cell division cycle 45 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:82,185,427...82,210,630
Ensembl chr11:82,185,473...82,210,619
JBrowse link
G Cdc7 cell division cycle 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:2,804,660...2,824,796
Ensembl chr14:2,804,661...2,824,778
JBrowse link
G Gins2 GINS complex subunit 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:48,626,770...48,639,523
Ensembl chr19:48,626,770...48,639,339
JBrowse link
G Gins4 GINS complex subunit 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:121,346,434...121,360,962
Ensembl chr 4:121,346,434...121,360,847
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:23,219,169...23,237,314
Ensembl chr 9:23,219,169...23,237,314
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,258,443...85,272,144
Ensembl chr11:85,258,443...85,272,144
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:13,483,030...13,504,389
Ensembl chr19:13,483,066...13,504,389
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:39,826,745...39,851,937
Ensembl chr13:39,826,763...39,851,960
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:17,042,207...17,049,470
Ensembl chr12:17,042,212...17,050,063
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:202,790,295...202,796,008
Ensembl chr 1:202,790,466...202,795,843
JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:29545921) RGD PMID:29545921 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:29545921) RGD PMID:29545921 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859
JBrowse link
G Lig4 DNA ligase 4 involved_in ISO (PMID:24837021) RGD PMID:24837021 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Uvrag UV radiation resistance associated involved_in ISO (PMID:22542840) RGD PMID:22542840 NCBI chr 1:153,185,356...153,442,200
Ensembl chr 1:153,185,395...153,442,136
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in ISO (PMID:24095731) RGD PMID:24095731 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5702356|PMID:26446488)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26446488 GO_REF:0000024 GO_REF:0000107 MGI:5702356 NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539
JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07031480.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Ankle1 ankyrin repeat and LEM domain containing 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,076,413...18,082,356
Ensembl chr16:18,076,492...18,083,729
JBrowse link
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 involved_in ISO (PMID:20613862) RGD PMID:20613862 NCBI chr 3:118,429,618...118,436,256
Ensembl chr 3:118,429,637...118,432,926
JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 involved_in ISO (PMID:20613862) RGD PMID:20613862 NCBI chr12:12,093,834...12,109,043
Ensembl chr12:12,093,834...12,108,511
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1857132 (MGI:3836659|PMID:19061978) RGD PMID:19061978 MGI:3836659 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Aunip aurora kinase A and ninein interacting protein involved_in ISS
ISO
GO_REF:0000024
(PMID:29042561)
UniProt
RGD
PMID:29042561 GO_REF:0000024 NCBI chr 5:146,722,157...146,736,233
Ensembl chr 5:146,722,337...146,736,501
JBrowse link
G Blm BLM RecQ like helicase involved_in ISO
IBA
(PMID:23543748)
PMID:21873635
RGD PMID:23543748 PMID:21873635 RGD:13792537 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated involved_in IBA
ISO
IEA
PMID:21873635
(PMID:17349954), (PMID:28398198)
GO_REF:0000107
RGD
Ensembl
PMID:17349954 PMID:28398198 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
IBA
GO_REF:0000107
(PMID:20729832), (PMID:21719596), (PMID:28398198)
MGI:2653913|MGI:2653914 (MGI:3511388|PMID:15485900)
GO_REF:0000024
PMID:21873635
Ensembl
RGD
UniProt
PMID:15485900 PMID:20729832 PMID:21719596 PMID:28398198 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:3511388, RGD:13792537 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr17:54,503,358...54,594,444
Ensembl chr17:54,503,358...54,594,425
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in IBA
ISO
PMID:21873635
(PMID:14728600)
RGD PMID:14728600 PMID:21873635 RGD:13792537 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Ercc4l1 excision repair cross-complementing rodent repair deficiency, complementation group 4-like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:954,927...983,651
Ensembl chr10:954,977...983,174
JBrowse link
G Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:26833090) RGD PMID:26833090 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 involved_in ISO (PMID:26807646) RGD PMID:26807646 NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO (PMID:20603015), (PMID:20603016) RGD PMID:20603015 PMID:20603016 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fbh1 F-box DNA helicase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,749,506...66,787,590
Ensembl chr17:66,749,534...66,787,590
JBrowse link
G Gen1 GEN1 Holliday junction 5' flap endonuclease involved_in ISO (PMID:23166748) RGD PMID:23166748 NCBI chr 6:33,947,599...33,978,461
Ensembl chr 6:33,948,206...33,978,401
JBrowse link
G H2ax H2A.X variant histone acts_upstream_of_or_within ISO MGI:2156048 (MGI:2179182|PMID:11934988) RGD PMID:11934988 MGI:2179182 NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
JBrowse link
G Helq helicase, POLQ-like involved_in ISO (PMID:19995904) RGD PMID:19995904 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Hus1 HUS1 checkpoint clamp component involved_in IBA
ISO
PMID:21873635
(MGI:3690191|PMID:16278671)
RGD PMID:16278671 PMID:21873635 MGI:3690191, RGD:13792537 NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
JBrowse link
G Inip INTS3 and NABP interacting protein involved_in ISO (PMID:19683501) RGD PMID:19683501 NCBI chr 5:74,648,392...74,662,628
Ensembl chr 5:74,648,392...74,662,628
JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 3:106,368,455...106,465,716
Ensembl chr 3:106,368,455...106,467,911
JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO (PMID:19683501) RGD PMID:19683501 NCBI chr 2:175,859,421...175,911,683
Ensembl chr 2:175,859,440...175,911,709
JBrowse link
G Kash5 KASH domain containing 5 acts_upstream_of_or_within ISO (MGI:5515826|PMID:24062341) RGD PMID:24062341 MGI:5515826 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368
JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:6446379|PMID:30297459)
(PMID:27153538)
UniProt
RGD
PMID:27153538 PMID:30297459 GO_REF:0000024 MGI:6446379 NCBI chr 1:202,895,751...202,903,178
Ensembl chr 1:202,895,751...202,903,458
JBrowse link
G Kdm4d lysine demethylase 4D acts_upstream_of_or_within ISO (PMID:24550317) RGD PMID:24550317 NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Mbtd1 mbt domain containing 1 involved_in ISO (PMID:27153538) RGD PMID:27153538 NCBI chr10:78,839,140...78,895,413
Ensembl chr10:78,839,036...78,893,720
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor involved_in ISO
IBA
ISS
(PMID:23401855)
PMID:21873635
(MGI:5437561|PMID:22771120)
GO_REF:0000024
RGD
UniProt
PMID:22771120 PMID:23401855 PMID:21873635 GO_REF:0000024 MGI:5437561, RGD:13792537 NCBI chr 3:120,086,741...120,117,008
Ensembl chr 3:120,086,763...120,117,008
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in IBA
ISO
PMID:21873635
(MGI:5437561|PMID:22771120), (MGI:5525985|PMID:23401855)
(PMID:22771115), (PMID:23401855)
RGD PMID:22771115 PMID:22771120 PMID:23401855 PMID:21873635 MGI:5437561 MGI:5525985, RGD:13792537 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 involved_in IBA
ISS
PMID:21873635
GO_REF:0000024
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537
G Meiob meiosis specific with OB-fold involved_in ISS
ISO
GO_REF:0000024
(MGI:5527015|PMID:24068956), (MGI:5538413|PMID:24240703)
UniProt
RGD
PMID:24068956 PMID:24240703 GO_REF:0000024 MGI:5527015 MGI:5538413 NCBI chr10:13,833,170...13,865,684
Ensembl chr10:13,833,750...13,865,046
JBrowse link
G Mms22l MMS22-like, DNA repair protein involved_in IBA
ISO
PMID:21873635
(PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:27797818)
RGD PMID:21055983 PMID:21055984 PMID:21055985 PMID:27797818 PMID:21873635 RGD:13792537 NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO
ISS
(PMID:20332121)
GO_REF:0000024
RGD
UniProt
PMID:20332121 GO_REF:0000024 NCBI chr 8:90,642,988...90,664,518
Ensembl chr 8:90,642,988...90,664,519
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISS
IEA
IBA
ISO
GO_REF:0000024
GO_REF:0000107
PMID:21873635
(PMID:29670289), (PMID:30612738)
UniProt
Ensembl
RGD
PMID:29670289 PMID:30612738 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nabp1 nucleic acid binding protein 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:19605351), (PMID:19683501)
PMID:21873635
UniProt
RGD
PMID:19605351 PMID:19683501 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107
JBrowse link
G Nabp2 nucleic acid binding protein 2 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:19605351), (PMID:19683501)
PMID:21873635
UniProt
Ensembl
RGD
PMID:19605351 PMID:19683501 PMID:21873635 GO_REF:0000024 GO_REF:0000107, RGD:13792537 NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027
JBrowse link
G Nbn nibrin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
JBrowse link
G Nsmce1 NSE1 homolog, SMC5-SMC6 complex component involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:180,030,355...180,058,541
Ensembl chr 1:180,030,160...180,058,417
JBrowse link
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase involved_in ISO
IBA
ISS
IEA
(PMID:16810316)
PMID:21873635
GO_REF:0000024
GO_REF:0000002
RGD
UniProt
InterPro
PMID:16810316 PMID:21873635 GO_REF:0000002 GO_REF:0000024, RGD:13792537 NCBI chr 7:90,936,112...91,173,435
Ensembl chr 7:90,936,112...91,164,899
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in IBA
ISO
PMID:21873635
(PMID:26323318)
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
JBrowse link
G Palb2 partner and localizer of BRCA2 involved_in IBA
ISO
PMID:21873635
(PMID:19369211), (PMID:19423707), (PMID:26323318), (PMID:28398198)
RGD PMID:19369211 PMID:19423707 PMID:26323318 PMID:28398198 PMID:21873635 RGD:13792537 NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990
JBrowse link
G Poll DNA polymerase lambda involved_in ISO
ISS
(PMID:20693240)
GO_REF:0000024
RGD
UniProt
PMID:20693240 GO_REF:0000024 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19995904) RGD PMID:19995904 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Ppp4c protein phosphatase 4, catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:181,392,899...181,399,703
Ensembl chr 1:181,392,923...181,399,659
JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in ISO (PMID:22909820) RGD PMID:22909820 NCBI chr 3:46,254,338...46,347,076
Ensembl chr 3:46,254,330...46,347,076
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 acts_upstream_of_or_within ISO MGI:1929645 (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad51 RAD51 recombinase acts_upstream_of_or_within
involved_in
IEP
ISO
(PMID:16428451)
(PMID:17996710), (PMID:17996711), (PMID:22778135), (PMID:23509288), (PMID:26681308), (PMID:27239033)
(MGI:3511388|PMID:15485900), (MGI:3525800|PMID:15359272)
RGD PMID:15359272 PMID:15485900 PMID:16428451 PMID:17996710 PMID:17996711 More... MGI:3511388 MGI:3525800, RGD:9831188 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in IBA
ISO
PMID:21873635
(PMID:26323318)
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad51b RAD51 paralog B involved_in IBA
ISO
PMID:21873635
(PMID:23149936)
RGD PMID:23149936 PMID:21873635 RGD:13792537 NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979
JBrowse link
G Rad51c RAD51 paralog C involved_in ISO (PMID:23149936) RGD PMID:23149936 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
G Rad51d RAD51 paralog D involved_in IBA
ISO
PMID:21873635
(PMID:23149936)
RGD PMID:23149936 PMID:21873635 RGD:13792537 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rad52 RAD52 homolog, DNA repair protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2446961|PMID:12379650)
RGD PMID:12379650 PMID:21873635 MGI:2446961, RGD:13792537 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
G Rad54b RAD54 homolog B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:16428451)
MGI:3617695|MGI:894697 (MGI:3615835|PMID:16428451), (MGI:3836659|PMID:19061978)
RGD PMID:16428451 PMID:19061978 PMID:21873635 MGI:3615835 MGI:3836659, RGD:13792537 NCBI chr 5:25,030,885...25,104,616
Ensembl chr 5:25,032,066...25,104,616
JBrowse link
G Rad54l RAD54 like acts_upstream_of_or_within ISO MGI:2183934|MGI:3605986 (MGI:3615835|PMID:16428451), (MGI:3836659|PMID:19061978) RGD PMID:16428451 PMID:19061978 MGI:3615835 MGI:3836659 NCBI chr 5:129,575,431...129,605,100
Ensembl chr 5:129,575,378...129,605,070
JBrowse link
G Rbbp8 RB binding protein 8, endonuclease involved_in IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
JBrowse link
G Rec8 REC8 meiotic recombination protein acts_upstream_of_or_within ISO MGI:3652039 (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Recql RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:175,308,337...175,332,965
Ensembl chr 4:175,304,117...175,332,945
JBrowse link
G Recql4 RecQ like helicase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:108,423,453...108,430,790
Ensembl chr 7:108,423,455...108,430,619
JBrowse link
G Recql5 RecQ like helicase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
G Rffl ring finger and FYVE-like domain containing E3 ubiquitin protein ligase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:67,740,711...67,803,694
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in ISO (PMID:26474068), (PMID:28575657), (PMID:28575658), (PMID:28691929) RGD PMID:26474068 PMID:28575657 PMID:28575658 PMID:28691929 NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
JBrowse link
G Rmi1 RecQ mediated genome instability 1 involved_in ISO
IBA
(PMID:23543748)
PMID:21873635
RGD PMID:23543748 PMID:21873635 RGD:13792537 NCBI chr17:6,256,537...6,264,523
Ensembl chr17:6,256,450...6,264,695
JBrowse link
G Rmi2 RecQ mediated genome instability 2 involved_in ISO (PMID:23543748) RGD PMID:23543748 NCBI chr10:4,829,333...4,837,264
Ensembl chr10:4,830,553...4,837,235
JBrowse link
G Rnf138 ring finger protein 138 involved_in IBA
ISS
ISO
PMID:21873635
GO_REF:0000024
(PMID:26502055), (PMID:26502057)
UniProt
RGD
PMID:26502055 PMID:26502057 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
JBrowse link
G Rpa1 replication protein A1 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:17765923)
MGI:3582609 (MGI:3056835|PMID:15470499)
PMID:21873635
RGD PMID:15470499 PMID:17765923 PMID:21873635 MGI:3056835, RGD:13792537 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:17765923)
UniProt
RGD
PMID:17765923 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IBA
ISO
PMID:21873635
(PMID:17765923)
RGD PMID:17765923 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:28834754), (PMID:29670289) RGD PMID:28834754 PMID:29670289 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
JBrowse link
G Sem1 SEM1 26S proteasome subunit involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3525800|PMID:15359272)
RGD PMID:15359272 PMID:21873635 MGI:3525800, RGD:13792537 NCBI chr 4:34,671,848...34,692,005
Ensembl chr 4:34,671,848...34,692,005
JBrowse link
G Sfpq splicing factor proline and glutamine rich acts_upstream_of_or_within ISO (PMID:20813759) RGD PMID:20813759 NCBI chr 5:139,338,034...139,353,476
Ensembl chr 5:139,338,075...139,353,472
JBrowse link
G Sfr1 SWI5-dependent homologous recombination repair protein 1 involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(MGI:4868525|PMID:20976249)
PMID:21873635
GO_REF:0000107
(PMID:21252223)
UniProt
RGD
Ensembl
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:4868525, RGD:13792537 NCBI chr 1:246,619,235...246,623,250
Ensembl chr 1:246,597,044...246,623,250
JBrowse link
G Slx1b SLX1 homolog B, structure-specific endonuclease subunit involved_in IBA
ISO
PMID:21873635
(PMID:19595721)
RGD PMID:19595721 PMID:21873635 RGD:13792537 NCBI chr 1:181,286,190...181,291,739
Ensembl chr 1:181,283,921...181,291,775
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in ISO (PMID:19595721), (PMID:19596235) RGD PMID:19595721 PMID:19596235 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Smc5 structural maintenance of chromosomes 5 involved_in ISO
IBA
(PMID:16810316)
PMID:21873635
RGD PMID:16810316 PMID:21873635 RGD:13792537 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Smc6 structural maintenance of chromosomes 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746
JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IBA
ISO
PMID:21873635
(PMID:23509288)
RGD PMID:23509288 PMID:21873635 RGD:13792537 NCBI chr11:84,766,593...85,007,597
Ensembl chr11:84,766,593...85,007,600
JBrowse link
G Swi5 SWI5 homologous recombination repair protein involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:4868525|PMID:20976249)
(PMID:21252223)
PMID:21873635
UniProt
RGD
PMID:20976249 PMID:21252223 PMID:21873635 GO_REF:0000024 MGI:4868525, RGD:13792537 NCBI chr 3:15,574,687...15,583,760
Ensembl chr 3:15,564,715...15,583,805
JBrowse link
G Swsap1 SWIM-type zinc finger 7 associated protein 1 involved_in IBA
ISO
PMID:21873635
(PMID:21965664)
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr 8:20,486,680...20,489,213
Ensembl chr 8:20,486,678...20,489,211
JBrowse link
G Tonsl tonsoku-like, DNA repair protein involved_in ISO
IBA
ISS
(PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:30773278)
(PMID:21055983), (PMID:21055984), (PMID:21055985), (PMID:27338793), (PMID:27797818), (PMID:30773278)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21055983 PMID:21055984 PMID:21055985 PMID:27338793 PMID:27797818 More... GO_REF:0000024, RGD:13792537 NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
JBrowse link
G Top3a DNA topoisomerase III alpha involved_in ISO (PMID:23543748) RGD PMID:23543748 NCBI chr10:45,419,219...45,457,356
Ensembl chr10:45,419,217...45,457,559
JBrowse link
G Ube2n ubiquitin-conjugating enzyme E2N involved_in ISO (PMID:17349954) RGD PMID:17349954 NCBI chr 7:30,154,330...30,184,373
Ensembl chr 7:30,154,616...30,184,355
JBrowse link
G Wdr48 WD repeat domain 48 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3877670 (MGI:5547894|PMID:24001775)
PMID:21873635
RGD PMID:24001775 PMID:21873635 MGI:5547894, RGD:13792537 NCBI chr 8:119,622,053...119,655,264
Ensembl chr 8:119,622,048...119,655,264
JBrowse link
G Wrn WRN RecQ like helicase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:58,763,517...58,898,604
Ensembl chr16:58,763,504...58,895,450
JBrowse link
G Xrcc2 X-ray repair cross complementing 2 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:23149936)
MGI:3654106 (MGI:3652689|PMID:16777961)
PMID:21873635
RGD PMID:16777961 PMID:23149936 PMID:21873635 MGI:3652689, RGD:13792537 NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in ISO (PMID:23149936) RGD PMID:23149936 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (PMID:18026119) RGD PMID:18026119 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 involved_in ISO
IEA
(PMID:20613862)
GO_REF:0000002
RGD
InterPro
PMID:20613862 GO_REF:0000002 NCBI chr 6:98,031,874...98,095,538
Ensembl chr 6:98,032,520...98,095,480
JBrowse link
G Zswim7 zinc finger, SWIM-type containing 7 involved_in ISO
IBA
(PMID:21965664)
PMID:21873635
RGD PMID:21965664 PMID:21873635 RGD:13792537 NCBI chr10:46,953,311...46,969,800
Ensembl chr10:46,957,525...46,969,671
JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aplf aprataxin and PNKP like factor involved_in ISO (PMID:23689425) RGD PMID:23689425 NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
JBrowse link
G Cyren cell cycle regulator of NHEJ involved_in ISO
ISS
IBA
(PMID:24610814)
GO_REF:0000024
PMID:21873635
(MGI:6202149|PMID:30017584)
RGD
UniProt
PMID:24610814 PMID:30017584 PMID:21873635 GO_REF:0000024 MGI:6202149, RGD:13792537 NCBI chr 4:63,547,311...63,553,394
Ensembl chr 4:63,547,335...63,551,602
JBrowse link
G Dclre1a DNA cross-link repair 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,569,911...255,589,815
Ensembl chr 1:255,569,919...255,589,678
JBrowse link
G Dclre1b DNA cross-link repair 1B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:191,309,909...191,318,399
Ensembl chr 2:191,309,913...191,318,423
JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Dntt DNA nucleotidylexotransferase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in ISO (PMID:14690602) RGD PMID:14690602 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit involved_in ISO (PMID:14690602) RGD PMID:14690602 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:9600082) RGD PMID:9600082 NCBI chr12:5,973,062...5,978,565
Ensembl chr12:5,901,586...5,978,565
JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:9600082) RGD PMID:9600082 NCBI chr16:32,710,651...32,713,230
Ensembl chr16:32,710,658...32,713,140
JBrowse link
G Iffo1 intermediate filament family orphan 1 involved_in ISO (PMID:31548606) RGD PMID:31548606 NCBI chr 4:157,945,075...157,962,302
Ensembl chr 4:157,945,107...157,962,302
JBrowse link
G Kdm2a lysine demethylase 2A involved_in ISO (PMID:21187428) RGD PMID:21187428 NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787
JBrowse link
G Lig1 DNA ligase 1 acts_upstream_of_or_within ISO (MGI:5014103|PMID:21655080) RGD PMID:21655080 MGI:5014103 NCBI chr 1:74,165,688...74,204,400
Ensembl chr 1:74,165,842...74,204,413
JBrowse link
G Lig3 DNA ligase 3 acts_upstream_of_or_within ISO (MGI:5014103|PMID:21655080) RGD PMID:21655080 MGI:5014103 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Lig4 DNA ligase 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:Q15554 (PMID:12517771), (PMID:17290226), (PMID:23275564), (PMID:9809069)
(MGI:5705227|PMID:12361565)
MGI:1857720|MGI:1857732 (MGI:1859491|PMID:10823907), (MGI:3652689|PMID:16777961)
RGD PMID:9809069 PMID:10823907 PMID:12361565 PMID:12517771 PMID:16777961 More... MGI:1859491 MGI:3652689 MGI:5705227, RGD:13792537 NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857946 (MGI:3039915|PMID:15084308)
Ensembl
RGD
PMID:15084308 GO_REF:0000107 MGI:3039915 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in ISO
IEA
IBA
(PMID:9651580)
GO_REF:0000107
PMID:21873635
RGD
Ensembl
PMID:9651580 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
G Nhej1 nonhomologous end-joining factor 1 involved_in ISS
IBA
ISO
PMID:16439205
PMID:21873635
(MGI:5807276|PMID:27798842), (MGI:5822993|PMID:28051062)
(PMID:16439204), (PMID:16439205), (PMID:17717001), (PMID:18158905), (PMID:18644470), (PMID:19056826), (PMID:20558749), (PMID:27437582), (PMID:28500754), (PMID:30250067)
GO_REF:0000024
RGD
UniProt
PMID:16439204 PMID:16439205 PMID:17717001 PMID:18158905 PMID:18644470 More... GO_REF:0000024 MGI:5807276 MGI:5822993, RGD:8553261, RGD:13792537 NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
JBrowse link
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase NOT|involved_in ISO (PMID:16810316) RGD PMID:16810316 NCBI chr 7:90,936,112...91,173,435
Ensembl chr 7:90,936,112...91,164,899
JBrowse link
G Paxx PAXX, non-homologous end joining factor involved_in ISO
IBA
(PMID:25574025), (PMID:25670504), (PMID:25941166), (PMID:30250067)
PMID:21873635
(MGI:5807276|PMID:27798842), (MGI:5822993|PMID:28051062)
RGD PMID:25574025 PMID:25670504 PMID:25941166 PMID:27798842 PMID:28051062 More... MGI:5807276 MGI:5822993, RGD:13792537 NCBI chr 3:8,274,762...8,276,338
Ensembl chr 3:8,274,762...8,276,521
JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in ISO (PMID:15385968), (PMID:28453785) RGD PMID:15385968 PMID:28453785 NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit involved_in ISO
ISS
(PMID:11470886)
GO_REF:0000024
RGD
UniProt
PMID:11470886 GO_REF:0000024 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Polb DNA polymerase beta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Poll DNA polymerase lambda involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:19806195), (PMID:30250067)
PMID:21873635
UniProt
RGD
PMID:19806195 PMID:30250067 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit acts_upstream_of_or_within ISO (MGI:5543316|PMID:23836881) RGD PMID:23836881 MGI:5543316 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Prpf19 pre-mRNA processing factor 19 involved_in ISO
ISS
(PMID:18263876)
GO_REF:0000024
RGD
UniProt
PMID:18263876 GO_REF:0000024 NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
JBrowse link
G Psmd14 proteasome 26S subunit, non-ATPase 14 involved_in ISO (PMID:22909820) RGD PMID:22909820 NCBI chr 3:46,254,338...46,347,076
Ensembl chr 3:46,254,330...46,347,076
JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO
ISS
(MGI:5293246|PMID:21857671), (MGI:5465398|PMID:22266820)
GO_REF:0000024
RGD
UniProt
PMID:21857671 PMID:22266820 GO_REF:0000024 MGI:5293246 MGI:5465398 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:16332963), (PMID:18263876), (PMID:21187428), (PMID:24573677) RGD PMID:16332963 PMID:18263876 PMID:21187428 PMID:24573677 NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 involved_in ISO (PMID:26089390) RGD PMID:26089390 NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
JBrowse link
G Smc5 structural maintenance of chromosomes 5 NOT|involved_in ISO (PMID:16810316) RGD PMID:16810316 NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 involved_in ISO (PMID:23333306), (PMID:23760478), (PMID:28241136)
(PMID:23333306), (PMID:23760478), (PMID:27153538), (PMID:28241136)
(MGI:5476381|PMID:23333305), (MGI:5887194|PMID:20362325)
RGD PMID:20362325 PMID:23333305 PMID:23333306 PMID:23760478 PMID:27153538 More... MGI:5476381 MGI:5887194 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in ISO (MGI:3758502|PMID:14690602) RGD PMID:14690602 MGI:3758502 NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
JBrowse link
G Xrcc4 X-ray repair cross complementing 4 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
UniProtKB:P49917 (PMID:12517771), (PMID:15385968), (PMID:17290226), (PMID:25597996), (PMID:25742519), (PMID:25934149), (PMID:26774286), (PMID:27437582), (PMID:28500754), (PMID:9809069)
MGI:1926771|MGI:3047571|MGI:3641440 (MGI:3761960|PMID:17713479)
(MGI:3758502|PMID:14690602)
RGD PMID:9809069 PMID:12517771 PMID:14690602 PMID:15385968 PMID:17290226 More... MGI:3758502 MGI:3761960, RGD:13792537 NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 involved_in ISO
IBA
(PMID:20383123), (PMID:26359349)
PMID:21873635
RGD PMID:20383123 PMID:26359349 PMID:21873635 RGD:13792537 NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:20383123), (PMID:26359349)
MGI:2179954 (MGI:2155497|PMID:11751629)
PMID:21873635
RGD PMID:11751629 PMID:20383123 PMID:26359349 PMID:21873635 MGI:2155497, RGD:13792537 NCBI chr 7:113,542,992...113,563,762
Ensembl chr 7:113,543,057...113,563,762
JBrowse link
double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad52 RAD52 homolog, DNA repair protein involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:153,106,062...153,128,598
Ensembl chr 4:153,106,062...153,128,207
JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fancm FA complementation group M involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
JBrowse link
G Helq helicase, POLQ-like involved_in ISO
IEA
(PMID:34937945)
GO_REF:0000107
RGD
Ensembl
PMID:34937945 GO_REF:0000107 NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube2v1 ubiquitin conjugating enzyme E2 V1 acts_upstream_of_or_within ISO SGD:S000003055 (MGI:2136126|PMID:11406273) RGD PMID:11406273 MGI:2136126 NCBI chr 3:156,317,339...156,340,198
Ensembl chr 3:156,316,781...156,340,273
JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 acts_upstream_of_or_within ISO SGD:S000003055 (MGI:2136126|PMID:11406273) RGD PMID:11406273 MGI:2136126 NCBI chr11:85,304,528...85,338,430
Ensembl chr11:85,304,526...85,336,369
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pold1 DNA polymerase delta 1, catalytic subunit involved_in ISO
IEA
ISS
(PMID:24191025)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24191025 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Poldip2 DNA polymerase delta interacting protein 2 involved_in ISO
IBA
(PMID:24191025)
PMID:21873635
RGD PMID:24191025 PMID:21873635 RGD:13792537 NCBI chr10:63,408,766...63,417,605
Ensembl chr10:63,407,213...63,417,605
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 5:158,563,545...158,576,698
Ensembl chr 5:158,563,567...158,576,693
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit involved_in ISO (PMID:24449906) RGD PMID:24449906 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
JBrowse link
G Polh DNA polymerase eta involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Polk DNA polymerase kappa involved_in IBA
ISO
PMID:21873635
(PMID:28297716)
RGD PMID:28297716 PMID:21873635 RGD:13792537 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO (PMID:24682820), (PMID:25746449), (PMID:28534480) RGD PMID:24682820 PMID:25746449 PMID:28534480 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
JBrowse link
G Rev1 REV1, DNA directed polymerase involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2157239|PMID:11711549)
RGD PMID:11711549 PMID:21873635 MGI:2157239, RGD:13792537 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit involved_in ISO
IBA
(PMID:24449906)
PMID:21873635
RGD PMID:24449906 PMID:21873635 RGD:13792537 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenps centromere protein S involved_in ISO (PMID:20347429) RGD PMID:20347429 NCBI chr 5:159,563,917...159,573,534 JBrowse link
G Cenpx centromere protein X involved_in ISO (PMID:20347429) RGD PMID:20347429 NCBI chr10:105,991,469...105,994,411 JBrowse link
G Dclre1a DNA cross-link repair 1A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:255,569,911...255,589,815
Ensembl chr 1:255,569,919...255,589,678
JBrowse link
G Dclre1b DNA cross-link repair 1B involved_in IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:20479256)
Ensembl
RGD
PMID:20479256 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:191,309,909...191,318,399
Ensembl chr 2:191,309,913...191,318,423
JBrowse link
G Dclre1c DNA cross-link repair 1C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:74,775,828...74,810,089
Ensembl chr17:74,776,935...74,809,186
JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit acts_upstream_of_or_within ISO (MGI:5506835|PMID:23637614) RGD PMID:23637614 MGI:5506835 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
G Ercc6l2 ERCC excision repair 6 like 2 involved_in ISO (PMID:24507776) RGD PMID:24507776 NCBI chr17:1,076,486...1,311,281
Ensembl chr17:1,216,428...1,310,275
JBrowse link
G Exo5 exonuclease 5 involved_in ISO
IBA
(PMID:23095756)
PMID:21873635
RGD PMID:23095756 PMID:21873635 RGD:13792537 NCBI chr 5:134,494,440...134,497,757
Ensembl chr 5:134,493,829...134,497,772
JBrowse link
G Faap100 FA core complex associated protein 100 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:105,641,677...105,653,809
Ensembl chr10:105,639,414...105,653,494
JBrowse link
G Faap20 FA core complex associated protein 20 involved_in ISO
ISS
(PMID:22266823), (PMID:22396592), (PMID:22705371)
GO_REF:0000024
RGD
UniProt
PMID:22266823 PMID:22396592 PMID:22705371 GO_REF:0000024 NCBI chr 5:165,808,370...165,815,291
Ensembl chr 5:165,808,657...165,815,333
JBrowse link
G Faap24 FA core complex associated protein 24 involved_in ISO (PMID:20347429) RGD PMID:20347429 NCBI chr 1:88,051,523...88,057,997
Ensembl chr 1:88,051,911...88,057,989
JBrowse link
G Fan1 FANCD2 and FANCI associated nuclease 1 involved_in ISO
IBA
(PMID:25430771)
PMID:21873635
RGD PMID:25430771 PMID:21873635 RGD:13792537 NCBI chr 1:117,915,323...117,945,044
Ensembl chr 1:117,917,099...117,944,977
JBrowse link
G Fanca FA complementation group A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:51,304,021...51,362,586
Ensembl chr19:51,304,021...51,362,527
JBrowse link
G Fancb FA complementation group B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192
JBrowse link
G Fancc FA complementation group C involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:1,680,660...1,822,610
Ensembl chr17:1,681,324...1,829,376
JBrowse link
G Fancd2 FA complementation group D2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:146,679,014...146,743,422
Ensembl chr 4:146,679,179...146,743,412
JBrowse link
G Fance FA complementation group E involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:6,369,416...6,386,631
Ensembl chr20:6,375,573...6,386,631
JBrowse link
G Fancf FA complementation group F involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:101,449,120...101,452,361
Ensembl chr 1:101,450,389...101,451,923
JBrowse link
G Fancg FA complementation group G involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:57,230,287...57,240,067
Ensembl chr 5:57,231,685...57,240,029
JBrowse link
G Fancl FA complementation group L involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr14:100,249,733...100,317,958
Ensembl chr14:100,248,875...100,314,255
JBrowse link
G Fancm FA complementation group M involved_in ISO
IBA
(PMID:20347429)
PMID:21873635
RGD PMID:20347429 PMID:21873635 RGD:13792537 NCBI chr 6:83,126,903...83,180,455
Ensembl chr 6:83,127,093...83,180,028
JBrowse link
G Hrob homologous recombination factor with OB-fold involved_in ISO
IEA
ISS
(PMID:31467087)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:31467087 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 involved_in ISO
IBA
(PMID:26323318)
PMID:21873635
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr13:43,345,091...43,374,316
Ensembl chr13:43,345,115...43,370,229
JBrowse link
G Poln DNA polymerase nu involved_in ISO (PMID:19908865), (PMID:19995904) RGD PMID:19908865 PMID:19995904 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Rad51 RAD51 recombinase involved_in ISO (PMID:26253028) RGD PMID:26253028 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in IBA
ISO
PMID:21873635
(PMID:26323318)
RGD PMID:26323318 PMID:21873635 RGD:13792537 NCBI chr 4:159,759,454...159,772,524
Ensembl chr 4:159,759,459...159,772,524
JBrowse link
G Rad51d RAD51 paralog D acts_upstream_of_or_within ISO MGI:2386281 (MGI:3574680|PMID:15781618) RGD PMID:15781618 MGI:3574680 NCBI chr10:67,805,720...67,824,452
Ensembl chr10:67,740,712...67,824,434
JBrowse link
G Rfwd3 ring finger and WD repeat domain 3 involved_in ISO (PMID:28575657), (PMID:28575658) RGD PMID:28575657 PMID:28575658 NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
JBrowse link
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Vcp valosin-containing protein involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
JBrowse link
G Xrcc3 X-ray repair cross complementing 3 involved_in ISO (PMID:26323318) RGD PMID:26323318 NCBI chr 6:130,863,405...130,873,765
Ensembl chr 6:130,863,959...130,872,444
JBrowse link
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
meiotic DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slx4 SLX4 structure-specific endonuclease subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:11,526,563...11,549,291
Ensembl chr10:11,528,424...11,549,295
JBrowse link
G Spo11 SPO11, initiator of meiotic double stranded breaks involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:161,755,299...161,770,930
Ensembl chr 3:161,757,519...161,770,925
JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brip1 BRCA1 interacting helicase 1 acts_upstream_of_or_within ISO MGI:4129733 (MGI:5700253|PMID:26490168) RGD PMID:26490168 MGI:5700253 NCBI chr10:70,907,266...71,031,502
Ensembl chr10:70,907,371...71,030,324
JBrowse link
G Six6os1 Six6 opposite strand transcript 1 involved_in IBA
ISO
PMID:21873635
(MGI:5822939|PMID:27796301)
RGD PMID:27796301 PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rad51c RAD51 paralog C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:72,205,032...72,231,643
Ensembl chr10:72,205,032...72,231,248
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spata22 spermatogenesis associated 22 acts_upstream_of_or_within ISO MGI:5314540 (MGI:5314623|PMID:22011390) RGD PMID:22011390 MGI:5314623 NCBI chr10:57,945,272...57,963,081
Ensembl chr10:57,932,187...57,963,081
JBrowse link
G Sycp1 synaptonemal complex protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:109542|MGI:3580000 (MGI:5315075|PMID:22164254)
PMID:21873635
Ensembl
RGD
PMID:22164254 PMID:21873635 GO_REF:0000107 MGI:5315075, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 acts_upstream_of_or_within ISO MGI:105931|MGI:1913904 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Tex12 testis expressed 12 acts_upstream_of_or_within ISO MGI:109542|MGI:3811722 (MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:5315075 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
meiotic mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcmdc2 minichromosome maintenance domain containing 2 acts_upstream_of_or_within ISO MGI:2178050|MGI:5511194 (MGI:5805564|PMID:27760146) RGD PMID:27760146 MGI:5805564 NCBI chr 5:9,291,967...9,337,526
Ensembl chr 5:9,298,101...9,338,300
JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exo1 exonuclease 1 involved_in IBA
ISO
PMID:21873635
UniProtKB:P43246 (PMID:11809771), (PMID:14636568), (PMID:9788596)
RGD PMID:9788596 PMID:11809771 PMID:14636568 PMID:21873635 RGD:13792537 NCBI chr13:87,809,725...87,834,654
Ensembl chr13:87,809,810...87,834,654
JBrowse link
G LOC100362927 replication protein A3-like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
UniProtKB:P43246|UniProtKB:P52701 (PMID:23603115)
MGI:1857946|MGI:1858054|MGI:1930998 (MGI:1197799|PMID:9500552), (MGI:1203882|PMID:9560238), (MGI:1332740|PMID:10096563), (MGI:1339254|PMID:10359802), (MGI:1353727|PMID:10657972), (MGI:1354996|PMID:10747038), (MGI:1859717|PMID:10851078), (MGI:1933705|PMID:11313994), (MGI:3607956|PMID:16204034), (MGI:3691360|PMID:10429667), (MGI:3692242|PMID:16728433), (MGI:81371|PMID:8674118)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:8674118 PMID:9500552 PMID:9560238 PMID:10096563 PMID:10359802 More... GO_REF:0000002 GO_REF:0000107 MGI:1197799 MGI:1203882 MGI:1332740 MGI:1339254 MGI:1353727 MGI:1354996 MGI:1859717 MGI:1933705 MGI:3607956 MGI:3691360 MGI:3692242 MGI:81371, RGD:13792537 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:104288|MGI:2384218 (MGI:3607956|PMID:16204034)
RGD PMID:16204034 PMID:21873635 MGI:3607956, RGD:13792537 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh2 mutS homolog 2 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
GO_REF:0000104
PMID:21873635
(PMID:7923193), (PMID:9677427)
UniProtKB:P40692|UniProtKB:P52701 (PMID:11555625), (PMID:23603115)
MGI:109519|MGI:1857940|MGI:1858055|MGI:2151801|MGI:2389314|MGI:2680817 (MGI:1096207|PMID:9288110), (MGI:1275866|PMID:9697842), (MGI:1350445|PMID:10581038), (MGI:1861016|PMID:10874005), (MGI:1889760|PMID:10992298), (MGI:1926519|PMID:11046134), (MGI:2176101|PMID:11890935), (MGI:2388857|PMID:12531017), (MGI:3029112|PMID:14744764), (MGI:3692242|PMID:16728433), (MGI:3703647|PMID:17331550), (MGI:5464025|PMID:23071719), (MGI:74950|PMID:7628020), (MGI:82395|PMID:8706033), (MGI:87767|PMID:9157971), (MGI:894568|PMID:9244348)
UniProt
RGD
PMID:7628020 PMID:7923193 PMID:8706033 PMID:9157971 PMID:9244348 More... GO_REF:0000104 MGI:1096207 MGI:1275866 MGI:1350445 MGI:1861016 MGI:1889760 MGI:1926519 MGI:2176101 MGI:2388857 MGI:3029112 MGI:3692242 MGI:3703647 MGI:5464025 MGI:74950 MGI:82395 MGI:87767 MGI:894568, RGD:13792537 NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938
JBrowse link
G Msh3 mutS homolog 3 acts_upstream_of_or_within
involved_in
ISO MGI:101816|MGI:1343961|MGI:1858056|MGI:88039 (MGI:1353715|PMID:10706084), (MGI:2154151|PMID:11691815), (MGI:3692242|PMID:16728433)
(PMID:8782829), (PMID:9677427)
RGD PMID:8782829 PMID:9677427 PMID:10706084 PMID:11691815 PMID:16728433 MGI:1353715 MGI:2154151 MGI:3692242 NCBI chr 2:23,444,326...23,585,777 JBrowse link
G Msh4 mutS homolog 4 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Msh5 mutS homolog 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G Msh6 mutS homolog 6 acts_upstream_of_or_within
involved_in
ISO
IBA
IMP
MGI:109519|MGI:1858014|MGI:2151803|MGI:3653701|MGI:88039 (MGI:1100204|PMID:9390556), (MGI:2154151|PMID:11691815), (MGI:2388851|PMID:12370835), (MGI:3053495|PMID:15324697), (MGI:3692242|PMID:16728433), (MGI:5464025|PMID:23071719)
PMID:21873635
UniProtKB:P40692|UniProtKB:P43246 (PMID:23603115)
(PMID:10871409), (PMID:23622243), (PMID:8782829)
RGD PMID:8782829 PMID:9390556 PMID:10871409 PMID:11691815 PMID:12370835 More... MGI:1100204 MGI:2154151 MGI:2388851 MGI:3053495 MGI:3692242 MGI:5464025, RGD:13792537, RGD:2292505 NCBI chr 6:6,562,631...6,579,995
Ensembl chr 6:6,562,632...6,579,956
JBrowse link
G Mutyh mutY DNA glycosylase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:130,274,034...130,286,149
Ensembl chr 5:130,274,122...130,286,146
JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO
IBA
(PMID:11005803)
PMID:21873635
RGD PMID:11005803 PMID:21873635 RGD:13792537 NCBI chr 3:119,499,039...119,502,911
Ensembl chr 3:119,498,810...119,502,995
JBrowse link
G Pms1 PMS1 homolog 1, mismatch repair system component acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1857948 (MGI:1197799|PMID:9500552)
PMID:21873635
RGD PMID:9500552 PMID:21873635 MGI:1197799, RGD:13792537 NCBI chr 9:48,229,403...48,340,237
Ensembl chr 9:48,253,410...48,340,237
JBrowse link
G Pms2 PMS1 homolog 2, mismatch repair system component involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:10871409), (PMID:23709753), (PMID:9618520)
MGI:1353455|MGI:1857946|MGI:1857947 (MGI:1197799|PMID:9500552), (MGI:1339254|PMID:10359802), (MGI:1933705|PMID:11313994), (MGI:3607956|PMID:16204034), (MGI:3691360|PMID:10429667), (MGI:3692242|PMID:16728433), (MGI:5464025|PMID:23071719)
PMID:21873635
RGD PMID:9500552 PMID:9618520 PMID:10359802 PMID:10429667 PMID:10871409 More... MGI:1197799 MGI:1339254 MGI:1933705 MGI:3607956 MGI:3691360 MGI:3692242 MGI:5464025, RGD:13792537 NCBI chr12:10,676,819...10,701,161
Ensembl chr12:10,676,764...10,701,066
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:23603115)
(MGI:5499950|PMID:23603115)
RGD PMID:23603115 PMID:21873635 MGI:5499950, RGD:13792537 NCBI chr19:23,186,325...23,196,045
Ensembl chr19:23,186,383...23,196,041
JBrowse link
G Rpa1 replication protein A1 involved_in ISO (PMID:9430682) RGD PMID:9430682 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Rpa2 replication protein A2 involved_in ISS
ISO
GO_REF:0000024
(PMID:9430682)
UniProt
RGD
PMID:9430682 GO_REF:0000024 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
JBrowse link
G Rpa3 replication protein A3 involved_in IBA
ISO
PMID:21873635
(PMID:9430682)
RGD PMID:9430682 PMID:21873635 RGD:13792537 NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:23622243) RGD PMID:23622243 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Tdg thymine-DNA glycosylase involved_in ISO (PMID:22573813) RGD PMID:22573813 NCBI chr 7:21,077,853...21,097,617
Ensembl chr 7:21,077,853...21,097,567
JBrowse link
G Xpc XPC complex subunit, DNA damage recognition and repair factor involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor involved_in ISO (PMID:26300262)
(MGI:5705200|PMID:26300262)
RGD PMID:26300262 MGI:5705200 NCBI chr20:32,818,219...32,929,577
Ensembl chr20:32,844,951...32,929,600
JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd4 coiled-coil-helix-coiled-coil-helix domain containing 4 acts_upstream_of_or_within ISO (MGI:5516376|PMID:24101517) RGD PMID:24101517 MGI:5516376 NCBI chr 4:123,968,264...123,977,398
Ensembl chr 4:123,968,265...123,977,414
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO
IEA
(PMID:19487465)
GO_REF:0000107
RGD
Ensembl
PMID:19487465 GO_REF:0000107 NCBI chr20:25,661,652...25,690,598
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Lig3 DNA ligase 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4943977|PMID:21390132), (MGI:4943978|PMID:21390131)
(PMID:21390132)
RGD PMID:21390131 PMID:21390132 PMID:21873635 MGI:4943977 MGI:4943978, RGD:13792537 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 acts_upstream_of_or_within ISO (PMID:25378300) RGD PMID:25378300 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
JBrowse link
G Primpol primase and DNA directed polymerase involved_in ISO (MGI:6393030|PMID:29073063) RGD PMID:29073063 MGI:6393030 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
JBrowse link
G Slc25a16 solute carrier family 25 member 16 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,158...25,717,558
Ensembl chr20:25,662,055...25,716,319
JBrowse link
G Tp53 tumor protein p53 acts_upstream_of_or_within ISO MGI:3528279 (MGI:5516376|PMID:24101517) RGD PMID:24101517 MGI:5516376 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mre11 MRE11 homolog, double strand break repair nuclease involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps3 ribosomal protein S3 involved_in ISO (PMID:17049931) RGD PMID:17049931 NCBI chr 1:153,778,363...153,783,663
Ensembl chr 1:153,777,472...153,783,680
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir221 microRNA 221 involved_in ISO (PMID:24147153) RGD PMID:24147153 NCBI chr  X:3,429,465...3,429,573
Ensembl chr  X:3,429,465...3,429,573
JBrowse link
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 involved_in ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20725033)
UniProt
RGD
PMID:20725033 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:204,387,215...204,395,495
Ensembl chr 1:204,387,215...204,395,483
JBrowse link
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:122,545,029...122,563,651
Ensembl chr 6:122,545,061...122,563,644
JBrowse link
G Rnf169 ring finger protein 169 involved_in ISO (PMID:22492721), (PMID:22733822), (PMID:22742833) RGD PMID:22492721 PMID:22733822 PMID:22742833 NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 involved_in ISO
ISS
(PMID:22884692)
GO_REF:0000024
RGD
UniProt
PMID:22884692 GO_REF:0000024 NCBI chr 9:85,916,691...86,043,312
Ensembl chr 9:85,916,691...86,051,403
JBrowse link