Uvrag (UV radiation resistance associated) - Rat Genome Database

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Gene: Uvrag (UV radiation resistance associated) Ictidomys tridecemlineatus
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Symbol: Uvrag
Name: UV radiation resistance associated
RGD ID: 12463584
Description: ENCODES a protein that exhibits SH3 domain binding (ortholog); SNARE binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); centrosome cycle (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH intellectual disability (ortholog); prostate cancer (ortholog); FOUND IN autophagosome membrane (ortholog); centrosome (ortholog); DNA-dependent protein kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,955,789 - 63,269,496 (+)NCBI
SpeTri2.0NW_0049364984,555,325 - 4,869,099 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Uvrag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494762,955,789 - 63,269,496 (+)NCBI
SpeTri2.0NW_0049364984,555,325 - 4,869,099 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UVRAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1175,815,210 - 76,144,232 (+)EnsemblGRCh38hg38GRCh38
GRCh381175,815,189 - 76,144,232 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371175,526,255 - 75,855,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,203,860 - 75,532,930 (+)NCBINCBI36hg18NCBI36
Build 341175,203,922 - 75,531,342NCBI
Celera1172,834,011 - 73,163,074 (+)NCBI
Cytogenetic Map11q13.5NCBI
HuRef1171,822,964 - 72,152,180 (+)NCBIHuRef
CHM1_11175,409,808 - 75,738,738 (+)NCBICHM1_1
Uvrag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39798,535,949 - 98,790,373 (-)NCBIGRCm39mm39
GRCm39 Ensembl798,534,228 - 98,790,348 (-)Ensembl
GRCm38798,886,742 - 99,141,167 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl798,885,021 - 99,141,141 (-)EnsemblGRCm38mm10GRCm38
MGSCv377106,035,253 - 106,289,654 (-)NCBIGRCm37mm9NCBIm37
MGSCv36798,761,944 - 99,016,305 (-)NCBImm8
Celera799,208,465 - 99,465,675 (-)NCBICelera
Cytogenetic Map7E1NCBI
Uvrag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21153,185,356 - 153,442,200 (-)NCBI
Rnor_6.0 Ensembl1163,844,818 - 164,101,578 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01163,844,804 - 164,101,568 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01170,047,877 - 170,304,150 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41156,194,649 - 156,435,696 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1151,290,816 - 151,527,565 (-)NCBICelera
Cytogenetic Map1q32NCBI
Uvrag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541415,731,519 - 16,043,555 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541415,733,116 - 16,043,555 (-)NCBIChiLan1.0ChiLan1.0
UVRAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11174,172,678 - 74,496,046 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1174,172,919 - 74,496,046 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01170,870,341 - 71,197,559 (+)NCBIMhudiblu_PPA_v0panPan3
UVRAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12122,505,968 - 22,821,027 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2122,507,162 - 22,820,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2122,272,215 - 22,586,892 (-)NCBI
ROS_Cfam_1.02122,710,811 - 23,024,221 (-)NCBI
UMICH_Zoey_3.12122,485,190 - 22,823,262 (-)NCBI
UNSW_CanFamBas_1.02122,704,676 - 23,019,383 (-)NCBI
UU_Cfam_GSD_1.02122,623,729 - 22,937,005 (-)NCBI
UVRAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl910,088,798 - 10,369,037 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1910,088,779 - 10,370,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2911,196,380 - 11,457,245 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UVRAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1167,032,575 - 67,353,207 (+)NCBI
ChlSab1.1 Ensembl167,032,436 - 67,353,166 (+)Ensembl
Vero_WHO_p1.0NW_02366604358,449,006 - 58,771,147 (-)NCBI
Uvrag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624817989,362 - 1,371,096 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005323216   ⟹   XP_005323273
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494762,955,789 - 63,269,496 (+)NCBI
SpeTri2.0NW_0049364984,555,325 - 4,869,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284963   ⟹   XP_040140897
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494762,955,796 - 63,269,496 (+)NCBI
RefSeq Acc Id: XM_040284964   ⟹   XP_040140898
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494762,955,948 - 63,269,496 (+)NCBI
RefSeq Acc Id: XM_040284965   ⟹   XP_040140899
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494762,955,796 - 63,205,683 (+)NCBI
RefSeq Acc Id: XM_040284966   ⟹   XP_040140900
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494762,955,796 - 63,269,496 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005323273   ⟸   XM_005323216
- Peptide Label: isoform X2
- UniProtKB: I3MVS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140900   ⟸   XM_040284966
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040140897   ⟸   XM_040284963
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140899   ⟸   XM_040284965
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040140898   ⟸   XM_040284964
- Peptide Label: isoform X3
Protein Domains
C2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016316 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000016215 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028312 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_dom UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  UV_resistance/autophagy_Atg14 UniProtKB/TrEMBL
NCBI Gene Uvrag ENTREZGENE
Pfam Atg14 UniProtKB/TrEMBL
SMART SM00239 UniProtKB/TrEMBL
UniProt I3MVS0 ENTREZGENE, UniProtKB/TrEMBL