LOC101976825 (high mobility group protein B1) - Rat Genome Database

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Gene: LOC101976825 (high mobility group protein B1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101976825
Name: high mobility group protein B1
RGD ID: 12717316
Description: ENCODES a protein that exhibits calcium-dependent protein kinase regulator activity (inferred); cytokine activity (inferred); DNA binding (inferred); INVOLVED IN autophagy (inferred); base-excision repair (inferred); cellular response to interleukin-7 (inferred); FOUND IN chromosome (inferred); cytoplasm (inferred); early endosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494325,845,500 - 25,846,726 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365166,259,790 - 6,261,016 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagy  (IEA)
base-excision repair  (IEA)
cellular response to interleukin-7  (IEA)
cellular response to lipopolysaccharide  (IEA)
chemotaxis  (IEA)
chromatin organization  (IEA)
DNA recombination  (IEA)
DNA repair  (IEA)
endothelial cell chemotaxis  (IEA)
endothelial cell proliferation  (IEA)
eye development  (IEA)
glycogen catabolic process  (IEA)
immune system process  (IEA)
innate immune response  (IEA)
lung development  (IEA)
macrophage activation involved in immune response  (IEA)
myeloid cell differentiation  (IEA)
myeloid dendritic cell activation  (IEA)
myeloid progenitor cell differentiation  (IEA)
plasmacytoid dendritic cell activation  (IEA)
positive regulation of autophagy  (IEA)
positive regulation of ERK1 and ERK2 cascade  (IEA)
positive regulation of glycogen catabolic process  (IEA)
positive regulation of innate immune response  (IEA)
positive regulation of interferon-alpha production  (IEA)
positive regulation of interferon-beta production  (IEA)
positive regulation of interleukin-1 beta production  (IEA)
positive regulation of interleukin-6 production  (IEA)
positive regulation of monocyte chemotactic protein-1 production  (IEA)
positive regulation of myeloid cell differentiation  (IEA)
positive regulation of myeloid progenitor cell differentiation  (IEA)
positive regulation of non-canonical NF-kappaB signal transduction  (IEA)
positive regulation of sprouting angiogenesis  (IEA)
positive regulation of toll-like receptor 2 signaling pathway  (IEA)
positive regulation of toll-like receptor 4 signaling pathway  (IEA)
positive regulation of transcription by RNA polymerase II  (IEA)
positive regulation of tumor necrosis factor production  (IEA)
positive regulation of wound healing  (IEA)
regulation of nucleotide-excision repair  (IEA)
regulation of T cell mediated immune response to tumor cell  (IEA)
regulation of tolerance induction  (IEA)
regulation of transcription by RNA polymerase II  (IEA)
response to glucocorticoid  (IEA)
signal transduction  (IEA)
transcription by RNA polymerase II  (IEA)

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005325522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005325522   ⟹   XP_005325579
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494325,845,500 - 25,846,726 (-)NCBI
SpeTri2.0NW_0049365166,259,790 - 6,261,016 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000027119.1
GenBank Protein KAG3294528 (Get FASTA)   NCBI Sequence Viewer  
  KAG3294529 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325579   ⟸   XM_005325522
- UniProtKB: A0A287D0R4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000443 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000041400.1 UniProtKB/TrEMBL
Gene3D-CATH High mobility group box domain UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_boxA_CS UniProtKB/TrEMBL
  HMGB UniProtKB/TrEMBL
NCBI Gene LOC101976825 ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN B1 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN DSP1 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/TrEMBL
PRINTS HIGHMOBLTY12 UniProtKB/TrEMBL
PROSITE HMG_BOX_1 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
UniProt A0A287D0R4 ENTREZGENE, UniProtKB/TrEMBL