Yeats4 (YEATS domain containing 4) - Rat Genome Database

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Gene: Yeats4 (YEATS domain containing 4) Ictidomys tridecemlineatus
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Symbol: Yeats4
Name: YEATS domain containing 4
RGD ID: 12437330
Description: ENCODES a protein that exhibits lysine-acetylated histone binding (inferred); modification-dependent protein binding (inferred); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (inferred); regulation of cell cycle (inferred); regulation of DNA-templated transcription (inferred); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH high grade glioma (ortholog); liposarcoma (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: YEATS domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494546,904,524 - 46,930,322 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365457,179,723 - 7,206,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365457,179,806 - 7,205,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Yeats4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494546,904,524 - 46,930,322 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365457,179,723 - 7,206,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365457,179,806 - 7,205,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YEATS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381269,359,743 - 69,427,072 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1269,359,710 - 69,390,870 (+)EnsemblGRCh38hg38GRCh38
GRCh371269,753,523 - 69,784,650 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361268,039,799 - 68,070,843 (+)NCBINCBI36Build 36hg18NCBI36
Build 341268,039,798 - 68,070,842NCBI
Celera1269,417,212 - 69,448,257 (+)NCBICelera
Cytogenetic Map12q15NCBI
HuRef1266,803,053 - 66,834,103 (+)NCBIHuRef
CHM1_11269,721,950 - 69,753,037 (+)NCBICHM1_1
T2T-CHM13v2.01269,338,679 - 69,406,033 (+)NCBIT2T-CHM13v2.0
Yeats4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910117,051,046 - 117,060,412 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10117,051,126 - 117,060,412 (-)EnsemblGRCm39 Ensembl
GRCm3810117,215,141 - 117,224,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10117,215,221 - 117,224,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710116,652,197 - 116,661,563 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610116,619,252 - 116,628,583 (-)NCBIMGSCv36mm8
Celera10119,158,167 - 119,167,533 (-)NCBICelera
Cytogenetic Map10D2NCBI
cM Map1065.26NCBI
Yeats4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8754,744,220 - 54,751,361 (-)NCBIGRCr8
mRatBN7.2752,858,313 - 52,865,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl752,858,305 - 52,865,635 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx754,765,037 - 54,772,178 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0756,968,144 - 56,975,285 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0756,746,025 - 56,753,166 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0760,287,477 - 60,294,618 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl760,287,531 - 60,294,796 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0760,289,459 - 60,296,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4756,559,308 - 56,566,449 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1756,580,029 - 56,587,174 (-)NCBI
Celera749,632,150 - 49,639,291 (-)NCBICelera
Cytogenetic Map7q22NCBI
Yeats4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554059,677,701 - 9,706,541 (+)NCBIChiLan1.0ChiLan1.0
YEATS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21077,387,110 - 77,418,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11277,383,508 - 77,414,755 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01266,881,733 - 66,912,966 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11269,658,150 - 69,688,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1269,658,150 - 69,688,824 (+)Ensemblpanpan1.1panPan2
YEATS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11011,364,435 - 11,382,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1011,364,553 - 11,382,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1011,296,326 - 11,372,181 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01011,487,657 - 11,563,718 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1011,487,774 - 11,505,875 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11011,355,015 - 11,430,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01011,601,894 - 11,677,845 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01011,724,390 - 11,800,641 (+)NCBIUU_Cfam_GSD_1.0
YEATS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl533,626,818 - 33,649,627 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1533,626,816 - 33,649,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2536,212,262 - 36,225,117 (+)NCBISscrofa10.2Sscrofa10.2susScr3
YEATS4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11164,989,143 - 65,017,837 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1164,989,152 - 65,017,938 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037180,675,078 - 180,703,367 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Yeats4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475028,446,234 - 28,470,571 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475028,446,930 - 28,470,557 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000014144   ⟹   ENSSTOP00000012670
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365457,179,723 - 7,206,691 (+)Ensembl
RefSeq Acc Id: XM_005328732   ⟹   XP_005328789
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494546,904,524 - 46,930,322 (-)NCBI
SpeTri2.0NW_0049365457,179,806 - 7,205,600 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328789 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012670.2
GenBank Protein KAG3291402 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328789   ⟸   XM_005328732
- UniProtKB: I3MMC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012670   ⟸   ENSSTOT00000014144


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014144 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014144.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1970 UniProtKB/TrEMBL
InterPro YEAST_sf UniProtKB/TrEMBL
  YEATS UniProtKB/TrEMBL
NCBI Gene Yeats4 ENTREZGENE
PANTHER PROTEIN AF-9 HOMOLOG UniProtKB/TrEMBL
  PROTEIN AF-9 HOMOLOG UniProtKB/TrEMBL
Pfam YEATS UniProtKB/TrEMBL
PROSITE YEATS UniProtKB/TrEMBL
UniProt I3MMC6 ENTREZGENE, UniProtKB/TrEMBL