Ncoa6 (nuclear receptor coactivator 6) - Rat Genome Database

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Gene: Ncoa6 (nuclear receptor coactivator 6) Ictidomys tridecemlineatus
Analyze
Symbol: Ncoa6
Name: nuclear receptor coactivator 6
RGD ID: 12440668
Description: ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); histone methyltransferase binding (ortholog); INVOLVED IN brain development (ortholog); DNA damage response (ortholog); heart development (ortholog); PARTICIPATES IN estrogen signaling pathway; histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); cardiomyopathy (ortholog); colon cancer (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear receptor coactivator 6, transcript variant X1; nuclear receptor coactivator 6, transcript variant X2; nuclear receptor coactivator 6, transcript variant X3; nuclear receptor coactivator 6, transcript variant X4; nuclear receptor coactivator 6, transcript variant X5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,766,751 - 172,862,411 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,906,485 - 5,982,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ncoa6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640172,766,751 - 172,862,411 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,906,485 - 5,982,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382034,714,774 - 34,825,651 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2034,689,097 - 34,825,651 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,302,578 - 33,413,454 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362032,766,239 - 32,877,094 (-)NCBINCBI36Build 36hg18NCBI36
Build 342032,766,238 - 32,877,094NCBI
Celera2030,051,663 - 30,162,529 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,081,569 - 30,192,220 (-)NCBIHuRef
CHM1_12033,204,060 - 33,314,823 (-)NCBICHM1_1
T2T-CHM13v2.02036,435,437 - 36,546,294 (-)NCBIT2T-CHM13v2.0
Ncoa6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,232,585 - 155,315,741 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,232,576 - 155,315,814 (-)EnsemblGRCm39 Ensembl
GRCm382155,390,656 - 155,473,911 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,390,656 - 155,473,894 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,216,401 - 155,266,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,082,112 - 155,129,567 (-)NCBIMGSCv36mm8
Celera2161,323,189 - 161,373,222 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
Ncoa6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,351,062 - 164,422,079 (-)NCBIGRCr8
mRatBN7.23143,890,896 - 143,961,916 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3143,890,896 - 143,952,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3147,757,713 - 147,797,978 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,374,984 - 156,415,249 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,114,516 - 154,154,781 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03150,919,317 - 150,990,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3150,919,317 - 150,960,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,287,434 - 157,358,499 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43145,886,874 - 145,957,928 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13145,808,879 - 145,815,141 (-)NCBI
Celera3142,616,753 - 142,657,466 (-)NCBICelera
Cytogenetic Map3q41-q42NCBI
Ncoa6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542226,564,037 - 26,632,675 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542226,564,535 - 26,639,516 (+)NCBIChiLan1.0ChiLan1.0
NCOA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22140,448,796 - 40,559,276 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12040,441,963 - 40,552,376 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,044,339 - 31,154,798 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,170,583 - 32,247,167 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,170,583 - 32,247,167 (-)Ensemblpanpan1.1panPan2
NCOA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12423,802,360 - 23,877,986 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2423,802,351 - 23,866,792 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2423,447,946 - 23,539,033 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,493,126 - 24,584,695 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2424,493,113 - 24,581,564 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12423,780,970 - 23,872,054 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02423,876,107 - 23,967,330 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,314,983 - 24,406,060 (-)NCBIUU_Cfam_GSD_1.0
NCOA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,114,291 - 38,221,901 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,114,284 - 38,221,904 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21743,309,959 - 43,393,797 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1239,013,364 - 39,129,723 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl239,013,232 - 39,129,658 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605087,702,887 - 87,819,956 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncoa6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248424,570,758 - 4,665,517 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000028728   ⟹   ENSSTOP00000023093
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365615,906,485 - 5,982,268 (+)Ensembl
RefSeq Acc Id: XM_005329906   ⟹   XP_005329963
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,751 - 172,843,650 (-)NCBI
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360544   ⟹   XP_013215998
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,843,650 (-)NCBI
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360545   ⟹   XP_013215999
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,843,650 (-)NCBI
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729573   ⟹   XP_021585248
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,751 - 172,840,038 (-)NCBI
SpeTri2.0NW_0049365615,909,511 - 5,982,798 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021729574   ⟹   XP_021585249
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,843,650 (-)NCBI
SpeTri2.0NW_0049365615,905,905 - 5,982,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040274362   ⟹   XP_040130296
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,862,410 (-)NCBI
RefSeq Acc Id: XM_040274363   ⟹   XP_040130297
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,862,411 (-)NCBI
RefSeq Acc Id: XM_040274364   ⟹   XP_040130298
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640172,766,787 - 172,862,410 (-)NCBI
RefSeq Acc Id: XP_013215998   ⟸   XM_013360544
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013215999   ⟸   XM_013360545
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005329963   ⟸   XM_005329906
- Peptide Label: isoform X1
- UniProtKB: I3NFE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021585249   ⟸   XM_021729574
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021585248   ⟸   XM_021729573
- Peptide Label: isoform X1
- UniProtKB: I3NFE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130297   ⟸   XM_040274363
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040130298   ⟸   XM_040274364
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040130296   ⟸   XM_040274362
- Peptide Label: isoform X5
Ensembl Acc Id: ENSSTOP00000023093   ⟸   ENSSTOT00000028728
Protein Domains
Nuclear receptor coactivator 6 TRADD-N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025050 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028728.2 UniProtKB/TrEMBL
InterPro NCOA6 UniProtKB/TrEMBL
  NCOA6_nucleic_acid-bd UniProtKB/TrEMBL
NCBI Gene Ncoa6 ENTREZGENE
PANTHER NUCLEAR RECEPTOR COACTIVATOR 6 UniProtKB/TrEMBL
  PTHR15690 UniProtKB/TrEMBL
Pfam Nucleic_acid_bd UniProtKB/TrEMBL
UniProt I3NFE6 ENTREZGENE, UniProtKB/TrEMBL