Ttf2 (transcription termination factor 2) - Rat Genome Database

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Gene: Ttf2 (transcription termination factor 2) Ictidomys tridecemlineatus
Analyze
Symbol: Ttf2
Name: transcription termination factor 2
RGD ID: 12604232
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP-dependent activity, acting on DNA (inferred); helicase activity (inferred); INVOLVED IN DNA repair (inferred); FOUND IN cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,272,302 - 12,311,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,177,871 - 2,213,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,177,814 - 2,216,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
DNA repair  (IEA)

Cellular Component
cytosol  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ttf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505812,272,302 - 12,311,258 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366272,177,871 - 2,213,901 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366272,177,814 - 2,216,536 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,060,326 - 117,107,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,060,326 - 117,107,453 (+)EnsemblGRCh38hg38GRCh38
GRCh371117,602,948 - 117,650,075 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,404,472 - 117,447,015 (+)NCBINCBI36Build 36hg18NCBI36
Build 341117,314,990 - 117,357,531NCBI
Celera1115,831,559 - 115,874,100 (+)NCBICelera
Cytogenetic Map1p13.1NCBI
HuRef1115,461,465 - 115,503,489 (+)NCBIHuRef
CHM1_11117,717,868 - 117,760,384 (+)NCBICHM1_1
T2T-CHM13v2.01117,070,767 - 117,117,876 (+)NCBIT2T-CHM13v2.0
Ttf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393100,846,176 - 100,877,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3100,846,176 - 100,876,979 (-)EnsemblGRCm39 Ensembl
GRCm383100,938,860 - 100,969,700 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3100,938,860 - 100,969,663 (-)EnsemblGRCm38mm10GRCm38
MGSCv373100,742,783 - 100,773,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363101,067,921 - 101,098,725 (-)NCBIMGSCv36mm8
Celera3103,146,966 - 103,178,082 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map343.86NCBI
Ttf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82191,054,942 - 191,086,331 (-)NCBIGRCr8
mRatBN7.22188,366,321 - 188,397,750 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2188,366,331 - 188,397,689 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2196,003,905 - 196,035,231 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02193,856,180 - 193,887,513 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02188,682,813 - 188,714,328 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02203,317,673 - 203,350,752 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2203,318,855 - 203,350,736 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02222,765,601 - 222,799,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42196,016,515 - 196,018,882 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12195,951,009 - 195,981,606 (-)NCBI
Celera2180,809,095 - 180,840,952 (-)NCBICelera
Cytogenetic Map2q34NCBI
Ttf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543520,168,842 - 20,207,999 (+)NCBIChiLan1.0ChiLan1.0
TTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21109,714,355 - 109,758,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11109,313,839 - 109,355,195 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,417,804 - 85,459,440 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11120,413,049 - 120,454,630 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1120,413,049 - 120,454,630 (-)Ensemblpanpan1.1panPan2
TTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11754,446,209 - 54,485,980 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1754,446,108 - 54,485,297 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1754,091,998 - 54,131,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01755,326,470 - 55,366,038 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1755,326,480 - 55,366,035 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11754,362,955 - 54,402,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01754,399,699 - 54,439,626 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01754,975,030 - 55,014,609 (+)NCBIUU_Cfam_GSD_1.0
TTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4103,632,381 - 103,695,036 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14103,632,377 - 103,676,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24113,596,173 - 113,640,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12016,624,797 - 16,667,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603819,295,123 - 19,341,520 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477212,754,198 - 12,798,041 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010942   ⟹   ENSSTOP00000009818
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366272,177,871 - 2,213,901 (+)Ensembl
RefSeq Acc Id: XM_040289085   ⟹   XP_040145019
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505812,272,302 - 12,311,258 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040145019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009818.3
GenBank Protein KAG3281199 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040145019   ⟸   XM_040289085
- UniProtKB: I3MGE3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000009818   ⟸   ENSSTOT00000010942
Protein Domains
GRF-type   Helicase ATP-binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010927 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010942.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  SNF2_RAD54_helicase_TF UniProtKB/TrEMBL
  Znf_GRF UniProtKB/TrEMBL
NCBI Gene Ttf2 ENTREZGENE
PANTHER TRANSCRIPTION TERMINATION FACTOR 2 UniProtKB/TrEMBL
  TRANSCRIPTION TERMINATION FACTOR 2-RELATED UniProtKB/TrEMBL
Pfam SNF2_N UniProtKB/TrEMBL
  zf-GRF UniProtKB/TrEMBL
PROSITE DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  ZF_GRF UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MGE3 ENTREZGENE, UniProtKB/TrEMBL