Taf1 (TATA-box binding protein associated factor 1) - Rat Genome Database

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Gene: Taf1 (TATA-box binding protein associated factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Taf1
Name: TATA-box binding protein associated factor 1
RGD ID: 12713495
Description: ENCODES a protein that exhibits acetyl-CoA binding (ortholog); histone H3K27me3 reader activity (ortholog); histone H4K16ac reader activity (ortholog); INVOLVED IN cellular response to ATP (ortholog); cellular response to UV (ortholog); DNA damage response (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN chromatin (ortholog); MLL1 complex (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TATA-box binding protein associated factor 1, transcript variant X1; TATA-box binding protein associated factor 1, transcript variant X2; TATA-box binding protein associated factor 1, transcript variant X3; TATA-box binding protein associated factor 1, transcript variant X4; TATA-box binding protein associated factor 1, transcript variant X5; TATA-box binding protein associated factor 1, transcript variant X6; TATA-box binding protein associated factor 1, transcript variant X7; TATA-box binding protein associated factor 1, transcript variant X8; transcription initiation factor TFIID subunit 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,427,534 - 46,509,580 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936762189,710 - 271,759 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Taf1Squirrelautism spectrum disorder  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:25741868
Taf1Squirrelautistic disorder  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: AutismClinVarPMID:21681106 and PMID:30208311
Taf1Squirrelautosomal hemophilia A  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: AUTOSOMAL HEMOPHILIA AClinVarPMID:31690835
Taf1Squirrelcongenital heart disease  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Heart and malformation ofClinVarPMID:25741868 more ...
Taf1Squirrelfactor VIII deficiency  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Factor 8 deficiency and congenitalClinVarPMID:31690835
Taf1SquirrelFG Syndrome 1  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: FG syndrome 1ClinVarPMID:28492532
Taf1Squirrelgenetic disease  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Taf1Squirrelintellectual disability  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVarPMID:25741868
Taf1SquirrelMarfanoid Mental Retardation Syndrome, Autosomal  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Marfanoid habitus and intellectual disabilityClinVarPMID:25741868 and PMID:26637982
Taf1Squirrelsyndromic X-linked intellectual disability 33  ISOTAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17576681 more ...
Taf1Squirrelsyndromic X-linked intellectual disability Lubs type  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic X-linked intellectual disability Lubs typeClinVarPMID:25741868
Taf1SquirrelX-linked dystonia-parkinsonism  ISOTAF1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:17273961 more ...
Taf1SquirrelX-linked severe combined immunodeficiency  ISOTAF1 (Homo sapiens)8554872ClinVar Annotator: match by term: X-linked severe combined immunodeficiencyClinVarPMID:28492532
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Taf1Squirrelsyndromic X-linked intellectual disability 33  ISOTAF1 (Homo sapiens)7240710 OMIM 
Taf1SquirrelX-linked dystonia-parkinsonism  ISOTAF1 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 20 of 25 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Taf1Squirrelcellular response to ATP involved_inISOTAF1 (Homo sapiens)9068941 PMID:24289924ParkinsonsUK-UCLPMID:24289924
Taf1Squirrelcellular response to UV involved_inISOTAF1 (Homo sapiens)9068941 PMID:24289924ParkinsonsUK-UCLPMID:24289924
Taf1Squirrelchromatin remodeling involved_inIEAGO:0004402150520179 GOCGO_REF:0000108
Taf1SquirrelDNA damage response involved_inISOTAF1 (Homo sapiens)9068941 PMID:24289924ParkinsonsUK-UCLPMID:24289924
Taf1SquirrelDNA-templated transcription initiation involved_inIEAInterPro:IPR011177150520179 InterProGO_REF:0000002
Taf1Squirrelmidbrain development involved_inISOUniProtKB:Q1LYC29068941 PMID:26637982ParkinsonsUK-UCLPMID:26637982
Taf1SquirrelmRNA transcription by RNA polymerase II involved_inISOTAF1 (Homo sapiens)9068941 PMID:17884155ComplexPortalPMID:17884155
Taf1Squirrelnegative regulation of gene expression involved_inISOTAF1 (Homo sapiens)9068941 PMID:17237821ParkinsonsUK-UCLPMID:17237821
Taf1Squirrelnegative regulation of protein autoubiquitination involved_inISOTAF1 (Homo sapiens)9068941 PMID:17237821ParkinsonsUK-UCLPMID:17237821
Taf1Squirrelnegative regulation of signal transduction by p53 class mediator involved_inISOTAF1 (Homo sapiens)9068941 PMID:18548200ParkinsonsUK-UCLPMID:18548200
Taf1Squirrelnegative regulation of transcription by RNA polymerase II involved_inISOTAF1 (Homo sapiens)9068941 PMID:24289924ParkinsonsUK-UCLPMID:24289924
Taf1Squirrelnegative regulation of ubiquitin-dependent protein catabolic process involved_inISOTAF1 (Homo sapiens)9068941 PMID:17237821ParkinsonsUK-UCLPMID:17237821
Taf1Squirrelpositive regulation of androgen receptor signaling pathway acts_upstream_ofISOTAF1 (Homo sapiens)9068941 PMID:20181722ParkinsonsUK-UCLPMID:20181722
Taf1Squirrelpositive regulation of proteasomal ubiquitin-dependent protein catabolic process involved_inISOTAF1 (Homo sapiens)9068941 PMID:15053879BHF-UCLPMID:15053879
Taf1Squirrelpositive regulation of transcription by RNA polymerase II involved_inISOTAF1 (Homo sapiens)9068941 PMID:20181722ParkinsonsUK-UCLPMID:20181722
Taf1Squirrelpositive regulation of transcription initiation by RNA polymerase II involved_inISOTAF1 (Homo sapiens)9068941 PMID:17884155ComplexPortalPMID:17884155
Taf1Squirrelprotein polyubiquitination involved_inISOTAF1 (Homo sapiens)9068941 PMID:20181722ParkinsonsUK-UCLPMID:20181722
Taf1Squirrelprotein stabilization involved_inISOTAF1 (Homo sapiens)9068941 PMID:17237821ParkinsonsUK-UCLPMID:17237821
Taf1Squirrelresponse to xenobiotic stimulus  ISOTaf1 (Rattus norvegicus)9068941doxorubicinRGDPMID:10070062 and REF_RGD_ID:2306531
Taf1SquirrelRNA polymerase II preinitiation complex assembly involved_inIEAPANTHER:PTN002493300 and PANTHER:PTN002677159150520179 TreeGrafterGO_REF:0000118
1 to 20 of 25 rows

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Taf1Squirrelchromatin located_inISOTAF1 (Homo sapiens)9068941 PMID:20181722 and PMID:24289924ParkinsonsUK-UCLPMID:20181722 and PMID:24289924
Taf1SquirrelMLL1 complex part_ofISOTAF1 (Homo sapiens)9068941 PMID:15960975UniProtPMID:15960975
Taf1Squirrelnucleolus located_inISOTAF1 (Homo sapiens)9068941 PMID:12498690ParkinsonsUK-UCLPMID:12498690
Taf1Squirrelnucleoplasm located_inISOTAF1 (Homo sapiens)9068941 PMID:12498690HPAGO_REF:0000052 and PMID:12498690
Taf1Squirrelnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
Taf1Squirrelnucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
Taf1Squirrelpronucleus located_inISOTaf1 (Mus musculus)9068941 PMID:16822332MGIPMID:16822332
Taf1Squirreltranscription factor TFIID complex part_ofIEAUniRule:UR000379760150520179 UniProtGO_REF:0000104
Taf1Squirreltranscription factor TFIID complex part_ofIEAPANTHER:PTN002493300 and PANTHER:PTN002677159150520179 TreeGrafterGO_REF:0000118
Taf1Squirreltranscription factor TFIID complex part_ofIEAInterPro:IPR011177 and InterPro:IPR040240150520179 InterProGO_REF:0000002
Taf1Squirreltranscription regulator complex part_ofISOUniProtKB:Q155459068941 PMID:25412659ParkinsonsUK-UCLPMID:25412659
1 to 11 of 11 rows

Molecular Function
1 to 20 of 38 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Taf1Squirrelacetyl-CoA binding NOT|enablesISOTAF1 (Homo sapiens)9068941 PMID:24927529ParkinsonsUK-UCLPMID:24927529
Taf1SquirrelDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
Taf1SquirrelDNA binding enablesIEAInterPro:IPR011177150520179 InterProGO_REF:0000002
Taf1Squirrelhistone acetyltransferase activity enablesIEAInterPro:IPR040240150520179 InterProGO_REF:0000002
Taf1Squirrelhistone H3K27me3 reader activity contributes_toISOUniProtKB:Q155459068941 PMID:24927529ParkinsonsUK-UCLPMID:24927529
Taf1Squirrelhistone H4K16ac reader activity enablesISOTAF1 (Homo sapiens)9068941 PMID:17996705BHF-UCLPMID:17996705
Taf1Squirrelhistone reader activity contributes_toISOTAF1 (Homo sapiens)9068941 PMID:24927529ParkinsonsUK-UCLPMID:24927529
Taf1Squirrelkinase activity enablesISOTAF1 (Homo sapiens)9068941 PMID:18548200ParkinsonsUK-UCLPMID:18548200
Taf1Squirrelnuclear receptor binding enablesISOUniProtKB:P102759068941 PMID:20181722ParkinsonsUK-UCLPMID:20181722
Taf1Squirrelp53 binding enablesISOUniProtKB:P046379068941 PMID:15053879BHF-UCLPMID:15053879
Taf1Squirrelpromoter-specific chromatin binding enablesISOTaf1 (Mus musculus)9068941 PMID:22323595MGIPMID:22323595
Taf1Squirrelprotein binding enablesISOUniProtKB:P064009068941 PMID:9858607UniProtPMID:9858607
Taf1Squirrelprotein binding enablesISOPR:Q9D3R99068941 PMID:12665565MGIPMID:12665565
Taf1Squirrelprotein binding enablesISOUniProtKB:P68400 and UniProtKB:Q009879068941 PMID:18548200ParkinsonsUK-UCLPMID:18548200
Taf1Squirrelprotein binding enablesISOUniProtKB:P15207 and UniProtKB:Q009879068941 PMID:20181722ParkinsonsUK-UCLPMID:20181722
Taf1Squirrelprotein binding enablesISOUniProtKB:O00268 and UniProtKB:P202269068941 PMID:7729427UniProtPMID:7729427
Taf1Squirrelprotein binding enablesISOUniProtKB:P032559068941 PMID:7565781IntActPMID:7565781
Taf1Squirrelprotein binding enablesISOUniProtKB:P174809068941 PMID:12498690ParkinsonsUK-UCLPMID:12498690
Taf1Squirrelprotein binding enablesISOUniProtKB:P352699068941 PMID:7590250UniProtPMID:7590250
Taf1Squirrelprotein binding enablesISOUniProtKB:P49848-19068941 PMID:7667268UniProtPMID:7667268
1 to 20 of 38 rows

RGD Manual Annotations


  
PMID:22301074   PMID:30032202  



Taf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X46,427,534 - 46,509,580 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936762189,710 - 271,759 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X71,366,357 - 71,530,525 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX71,366,136 - 71,532,374 (+)EnsemblGRCh38hg38GRCh38
GRCh37X70,586,207 - 70,750,375 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X70,502,839 - 70,601,025 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X70,369,134 - 70,467,321NCBI
CeleraX70,939,992 - 71,039,729 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX64,401,859 - 64,501,671 (+)NCBIHuRef
CHM1_1X70,479,138 - 70,579,043 (+)NCBICHM1_1
T2T-CHM13v2.0X69,800,459 - 69,963,776 (+)NCBIT2T-CHM13v2.0
Taf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X100,576,335 - 100,644,635 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX100,576,279 - 100,644,640 (+)EnsemblGRCm39 Ensembl
GRCm38X101,527,572 - 101,601,789 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX101,532,734 - 101,601,789 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X98,728,074 - 98,797,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X97,735,454 - 97,804,508 (+)NCBIMGSCv36mm8
CeleraX88,450,587 - 88,519,292 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX44.29NCBI
Taf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X70,680,901 - 70,756,535 (+)NCBIGRCr8
mRatBN7.2X66,640,915 - 66,716,543 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX66,640,982 - 66,716,543 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX68,124,339 - 68,199,897 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X71,624,742 - 71,700,095 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X69,185,648 - 69,261,210 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X71,412,291 - 71,486,456 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX71,412,289 - 71,485,085 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X72,261,626 - 72,335,791 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X89,590,556 - 89,666,569 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX66,996,430 - 67,071,877 (+)NCBICelera
Cytogenetic MapXq22NCBI
Taf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547510,930,192 - 11,005,724 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547510,930,175 - 11,006,876 (+)NCBIChiLan1.0ChiLan1.0
TAF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X71,039,480 - 71,139,385 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X71,043,123 - 71,142,989 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X60,630,137 - 60,729,904 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X70,684,192 - 70,784,292 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX70,684,217 - 70,782,323 (+)Ensemblpanpan1.1panPan2
TAF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X55,693,091 - 55,764,268 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX55,693,194 - 55,763,683 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX46,519,902 - 46,591,035 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X56,662,169 - 56,733,328 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX56,662,183 - 56,732,743 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X54,629,611 - 54,700,758 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X55,961,540 - 56,032,713 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X55,888,952 - 55,960,089 (+)NCBIUU_Cfam_GSD_1.0
TAF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX57,382,354 - 57,466,697 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X57,382,211 - 57,466,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TAF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X61,167,743 - 61,269,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX61,167,589 - 61,268,839 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660653,030,320 - 3,130,765 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249031,698,201 - 1,774,607 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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1 to 10 of 120 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001243.4(TNFRSF8):c.268+2556C>G single nucleotide variant Lung cancer [RCV000089748] Chr1:12099773 [GRCh38]
Chr1:12159830 [GRCh37]
Chr1:1p36.22
uncertain significance
GRCh38/hg38 1p36.22-36.21(chr1:11654070-12768656)x3 copy number gain See cases [RCV000051460] Chr1:11654070..12768656 [GRCh38]
Chr1:11714127..12828807 [GRCh37]
Chr1:11636714..12751394 [NCBI36]
Chr1:1p36.22-36.21
uncertain significance
GRCh38/hg38 1p36.22(chr1:11737130-12169786)x3 copy number gain See cases [RCV000051461] Chr1:11737130..12169786 [GRCh38]
Chr1:11797187..12229843 [GRCh37]
Chr1:11719774..12152430 [NCBI36]
Chr1:1p36.22
uncertain significance
GRCh38/hg38 1p36.31-36.21(chr1:6652339-12724844)x3 copy number gain See cases [RCV000051794] Chr1:6652339..12724844 [GRCh38]
Chr1:6712399..12784811 [GRCh37]
Chr1:6634986..12707398 [NCBI36]
Chr1:1p36.31-36.21
pathogenic
GRCh38/hg38 1p36.31-36.13(chr1:6853513-17326813)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051795]|See cases [RCV000051795] Chr1:6853513..17326813 [GRCh38]
Chr1:6913573..17685411 [GRCh37]
Chr1:6836160..17557998 [NCBI36]
Chr1:1p36.31-36.13
pathogenic
GRCh38/hg38 1p36.32-36.21(chr1:2963330-12666744)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053713]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053713]|See cases [RCV000053713] Chr1:2963330..12666744 [GRCh38]
Chr1:2879895..12726755 [GRCh37]
Chr1:2869755..12649342 [NCBI36]
Chr1:1p36.32-36.21
pathogenic
GRCh38/hg38 1p36.32-36.13(chr1:3006193-17688934)x1 copy number loss See cases [RCV000053714] Chr1:3006193..17688934 [GRCh38]
Chr1:2922757..18015429 [GRCh37]
Chr1:2912617..17888016 [NCBI36]
Chr1:1p36.32-36.13
pathogenic
GRCh38/hg38 1p36.32-36.21(chr1:4898439-13111056)x1 copy number loss See cases [RCV000053724] Chr1:4898439..13111056 [GRCh38]
Chr1:4958499..13178528 [GRCh37]
Chr1:4858359..13101115 [NCBI36]
Chr1:1p36.32-36.21
pathogenic
GRCh38/hg38 1p36.22-36.12(chr1:10556797-22557907)x1 copy number loss See cases [RCV000053760] Chr1:10556797..22557907 [GRCh38]
Chr1:10616854..22884400 [GRCh37]
Chr1:10539441..22756987 [NCBI36]
Chr1:1p36.22-36.12
pathogenic
GRCh38/hg38 1p36.22-36.13(chr1:10621776-16520709)x1 copy number loss See cases [RCV000053763] Chr1:10621776..16520709 [GRCh38]
Chr1:10681833..16847204 [GRCh37]
Chr1:10604420..16719791 [NCBI36]
Chr1:1p36.22-36.13
pathogenic
1 to 10 of 120 rows






RefSeq Acc Id: XM_005339944   ⟹   XP_005340001
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,434,023 - 46,509,531 (-)NCBI
SpeTri2.0NW_004936762194,552 - 271,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005339945   ⟹   XP_005340002
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,433,754 - 46,509,580 (-)NCBI
SpeTri2.0NW_004936762195,928 - 271,754 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365042   ⟹   XP_013220496
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,432,353 - 46,509,567 (-)NCBI
SpeTri2.0NW_004936762194,552 - 271,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719910   ⟹   XP_021575585
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,432,353 - 46,509,570 (-)NCBI
SpeTri2.0NW_004936762194,552 - 271,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719911   ⟹   XP_021575586
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,432,353 - 46,509,569 (-)NCBI
SpeTri2.0NW_004936762194,552 - 271,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719912   ⟹   XP_021575587
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,434,023 - 46,509,569 (-)NCBI
SpeTri2.0NW_004936762194,552 - 271,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719913   ⟹   XP_021575588
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,427,534 - 46,509,571 (-)NCBI
SpeTri2.0NW_004936762189,710 - 271,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021719914   ⟹   XP_021575589
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,432,353 - 46,508,445 (-)NCBI
SpeTri2.0NW_004936762194,552 - 270,580 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040281962   ⟹   XP_040137896
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X46,432,353 - 46,509,570 (-)NCBI
RefSeq Acc Id: XP_005340001   ⟸   XM_005339944
- Peptide Label: isoform X6
- UniProtKB: A0A287CW62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013220496   ⟸   XM_013365042
- Peptide Label: isoform X3
- UniProtKB: I3MQI9 (UniProtKB/TrEMBL),   A0A287D5X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340002   ⟸   XM_005339945
- Peptide Label: isoform X8
- UniProtKB: I3N3C7 (UniProtKB/TrEMBL),   A0A287CW62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575588   ⟸   XM_021719913
- Peptide Label: isoform X7
- UniProtKB: A0A287D5X8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021575586   ⟸   XM_021719911
- Peptide Label: isoform X4
- UniProtKB: A0A287CW62 (UniProtKB/TrEMBL)
- Sequence:
Bromo



1 to 35 of 35 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000015879 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015890.3 UniProtKB/TrEMBL
  ENSSTOT00000023740.2 UniProtKB/TrEMBL
  ENSSTOT00000039672.1 UniProtKB/TrEMBL
  ENSSTOT00000040415.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1100.10 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
InterPro Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  TAF1 UniProtKB/TrEMBL
  TAF1_animal UniProtKB/TrEMBL
  TAF_II_230-bd UniProtKB/TrEMBL
  TAFII-230_TBP-bd_sf UniProtKB/TrEMBL
  TFIID_sub1_DUF3591 UniProtKB/TrEMBL
  Znf-CCHC_6 UniProtKB/TrEMBL
NCBI Gene Taf1 ENTREZGENE
PANTHER PTHR13900 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1 UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DUF3591 UniProtKB/TrEMBL
  TBP-binding UniProtKB/TrEMBL
  zf-CCHC_6 UniProtKB/TrEMBL
PIRSF TAF1_animal UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
SMART BROMO UniProtKB/TrEMBL
Superfamily-SCOP SSF47055 UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
UniProt A0A287CW62 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D5X8 ENTREZGENE, UniProtKB/TrEMBL
  I3MQI9 ENTREZGENE, UniProtKB/TrEMBL
  I3N3C7 ENTREZGENE, UniProtKB/TrEMBL
1 to 35 of 35 rows