Rps6ka6 (ribosomal protein S6 kinase A6) - Rat Genome Database

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Gene: Rps6ka6 (ribosomal protein S6 kinase A6) Ictidomys tridecemlineatus
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Symbol: Rps6ka6
Name: ribosomal protein S6 kinase A6
RGD ID: 12645411
Description: INVOLVED IN DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ortholog); negative regulation of embryonic development (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN fibrillar center (ortholog); mitochondrion (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ribosomal protein S6 kinase A6, transcript variant X1; ribosomal protein S6 kinase A6, transcript variant X2; ribosomal protein S6 kinase A6, transcript variant X3; ribosomal protein S6 kinase alpha-6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X58,533,568 - 58,632,733 (-)NCBI
SpeTri2.0NW_0049365474,846,012 - 4,952,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Rps6ka6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X58,533,568 - 58,632,733 (-)NCBI
SpeTri2.0NW_0049365474,846,012 - 4,952,773 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS6KA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX84,058,346 - 84,188,199 (-)EnsemblGRCh38hg38GRCh38
GRCh38X84,058,346 - 84,188,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X83,313,354 - 83,443,207 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X83,205,640 - 84,362,350 (-)NCBINCBI36hg18NCBI36
Build 34X83,125,128 - 83,254,098NCBI
CeleraX83,550,763 - 83,681,714 (-)NCBI
Cytogenetic MapXq21.1NCBI
HuRefX76,885,898 - 76,994,131 (-)NCBIHuRef
CHM1_1X83,207,273 - 83,336,842 (-)NCBICHM1_1
Rps6ka6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X110,297,534 - 110,447,794 (-)NCBIGRCm39mm39
GRCm39 EnsemblX110,297,889 - 110,447,656 (-)Ensembl
GRCm38X111,387,837 - 111,538,097 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX111,388,192 - 111,537,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X108,501,801 - 108,651,554 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X107,505,136 - 107,654,889 (-)NCBImm8
CeleraX98,071,699 - 98,217,087 (-)NCBICelera
Cytogenetic MapXE1NCBI
Rps6ka6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X76,354,824 - 76,454,484 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX76,353,760 - 76,454,484 (-)Ensembl
Rnor_6.0X82,641,679 - 82,743,771 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX82,641,687 - 82,743,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X82,609,740 - 82,710,719 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X99,798,274 - 99,901,585 (-)NCBIRGSC3.4rn4RGSC3.4
CeleraX77,660,385 - 77,759,926 (-)NCBICelera
Cytogenetic MapXq31NCBI
Rps6ka6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555293,149,407 - 3,296,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555293,115,652 - 3,296,505 (-)NCBIChiLan1.0ChiLan1.0
RPS6KA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X83,242,717 - 83,373,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX83,243,957 - 83,373,194 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X73,131,457 - 73,261,906 (-)NCBIMhudiblu_PPA_v0panPan3
RPS6KA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X64,915,871 - 65,111,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX64,921,230 - 65,111,116 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX55,672,366 - 55,868,014 (-)NCBI
ROS_Cfam_1.0X66,239,816 - 66,439,714 (-)NCBI
UMICH_Zoey_3.1X63,893,818 - 64,089,422 (-)NCBI
UNSW_CanFamBas_1.0X65,525,394 - 65,721,255 (-)NCBI
UU_Cfam_GSD_1.0X65,099,716 - 65,295,248 (-)NCBI
RPS6KA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX67,236,473 - 67,415,024 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X67,234,684 - 67,415,114 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X77,099,566 - 77,278,238 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS6KA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X72,942,352 - 73,081,174 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX72,942,648 - 73,080,887 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660677,794,891 - 7,927,152 (+)NCBIVero_WHO_p1.0
Rps6ka6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248524,287,104 - 4,492,128 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005328833   ⟹   XP_005328890
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,338 (-)NCBI
SpeTri2.0NW_0049365474,846,012 - 4,952,773 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021728767   ⟹   XP_021584442
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,335 (-)NCBI
SpeTri2.0NW_0049365474,846,012 - 4,952,772 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040282649   ⟹   XP_040138583
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,338 (-)NCBI
RefSeq Acc Id: XM_040282656   ⟹   XP_040138590
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,060 (-)NCBI
RefSeq Acc Id: XM_040282659   ⟹   XP_040138593
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,337 (-)NCBI
RefSeq Acc Id: XM_040282677   ⟹   XP_040138611
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,721 (-)NCBI
RefSeq Acc Id: XM_040282679   ⟹   XP_040138613
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X58,533,568 - 58,632,733 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005328890   ⟸   XM_005328833
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021584442   ⟸   XM_021728767
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040138613   ⟸   XM_040282679
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040138611   ⟸   XM_040282677
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040138583   ⟸   XM_040282649
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138593   ⟸   XM_040282659
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040138590   ⟸   XM_040282656
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002290 ENTREZGENE
NCBI Gene Rps6ka6 ENTREZGENE