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Gene: Hdgfl2 (HDGF like 2) Ictidomys tridecemlineatus

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Symbol:

Hdgfl2

Name:

HDGF like 2

RGD ID:

12508291

Description:

ENCODES a protein that exhibits histone H3K27me3 reader activity (inferred); histone H3K9me2/3 reader activity (inferred); histone reader activity (inferred); INVOLVED IN DNA damage response (inferred); DNA recombination (inferred); DNA repair (inferred); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

HDGF like 2, transcript variant X1; HDGF like 2, transcript variant X2; HDGF like 2, transcript variant X3; hepatoma-derived growth factor-related protein 2; LOC101974303

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HDGFL2 (HDGF like 2)	NCBI	Ortholog
Mus musculus (house mouse):	Hdgfl2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Hdgfl2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hdgfl2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HDGFL2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HDGFL2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HDGFL2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HDGFL2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hdgfl2 (HDGF like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,219,517 - 215,248,069 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,590,329 - 2,618,604 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,590,557 - 2,615,241 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hdgfl2	Squirrel	DNA damage response	involved_in	IEA	UniProtKB-KW:KW-0227	150520179		UniProt	GO_REF:0000043
Hdgfl2	Squirrel	DNA recombination	involved_in	IEA	UniProtKB-KW:KW-0233	150520179		UniProt	GO_REF:0000043
Hdgfl2	Squirrel	DNA repair	involved_in	IEA	UniProtKB-KW:KW-0234	150520179		UniProt	GO_REF:0000043
Hdgfl2	Squirrel	DNA repair-dependent chromatin remodeling	involved_in	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	muscle cell differentiation	involved_in	IEA	UniProtKB:Q3UMU9 more ...	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	muscle organ development	involved_in	IEA	UniProtKB-KW:KW-0517	150520179		UniProt	GO_REF:0000043
Hdgfl2	Squirrel	positive regulation of cell growth	involved_in	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	positive regulation of double-strand break repair via homologous recombination	involved_in	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	skeletal muscle tissue regeneration	involved_in	IEA	UniProtKB:Q3UMU9 and ensembl:ENSMUSP00000153249	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hdgfl2	Squirrel	cytoplasm	located_in	IEA	UniProtKB-SubCell:SL-0086	150520179		UniProt	GO_REF:0000044
Hdgfl2	Squirrel	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
Hdgfl2	Squirrel	nucleus	located_in	IEA	UniProtKB:Q3UMU9 more ...	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Hdgfl2	Squirrel	histone H3K27me3 reader activity	enables	IEA	PANTHER:PTN000284719	150520179		TreeGrafter	GO_REF:0000118
Hdgfl2	Squirrel	histone H3K27me3 reader activity	enables	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	histone H3K9me2/3 reader activity	enables	IEA	PANTHER:PTN000284719	150520179		TreeGrafter	GO_REF:0000118
Hdgfl2	Squirrel	histone H3K9me2/3 reader activity	enables	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	histone reader activity	enables	IEA	UniProtKB:Q7Z4V5 and ensembl:ENSP00000483345	150520179		Ensembl	GO_REF:0000107
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:Q15554	9068941	PMID:21044950	IntAct	PMID:21044950
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:P51859	9068941	PMID:22212508	IntAct	PMID:22212508
Hdgfl2	Squirrel	protein binding	enables	ISO	PR:P51859	9068941	PMID:22212508	MGI	PMID:22212508
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:P16104 more ...	9068941	PMID:26721387	UniProt	PMID:26721387
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:P51532 more ...	9068941	PMID:32459350	UniProt	PMID:32459350
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:P58269-2 and UniProtKB:Q3TKT4	9068941	PMID:32459350	UniProt	PMID:32459350
Hdgfl2	Squirrel	protein binding	enables	ISO	UniProtKB:Q96ST2	9068941	PMID:25689719	UniProt	PMID:25689719

PMID:30032202

Hdgfl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	215,219,517 - 215,248,069 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	2,590,329 - 2,618,604 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	2,590,557 - 2,615,241 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HDGFL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	4,472,297 - 4,502,207 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	4,472,297 - 4,502,208 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	4,472,294 - 4,502,219 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	4,423,255 - 4,453,223 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	4,410,462 - 4,440,415 (+)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	4,234,125 - 4,263,759 (+)	NCBI		HuRef
CHM1_1	19	4,471,840 - 4,502,384 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	4,455,746 - 4,485,666 (+)	NCBI		T2T-CHM13v2.0

Hdgfl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	56,386,661 - 56,407,605 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	56,386,634 - 56,407,607 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	56,079,599 - 56,100,605 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	56,079,634 - 56,100,607 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	56,219,080 - 56,240,019 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	55,672,950 - 55,693,889 (+)	NCBI		MGSCv36	mm8
Celera	17	59,498,318 - 59,519,257 (+)	NCBI		Celera
Cytogenetic Map	17	D	NCBI
cM Map	17	29.15	NCBI

Hdgfl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	996,687 - 1,016,352 (+)	NCBI		GRCr8
mRatBN7.2	9	909,581 - 929,195 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	909,614 - 929,186 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	1,356,830 - 1,376,171 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	6,703,386 - 6,722,855 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	5,661,867 - 5,681,208 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	10,972,342 - 10,991,938 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	10,972,351 - 10,991,927 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	9,959,289 - 9,978,889 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	9	7,577,663 - 7,597,323 (-)	NCBI		Celera
Cytogenetic Map	9	q11	NCBI

Hdgfl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	4,425,325 - 4,447,917 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	4,426,929 - 4,447,276 (-)	NCBI	ChiLan1.0	ChiLan1.0

HDGFL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	8,864,252 - 8,896,238 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	8,094,099 - 8,126,063 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	3,489,986 - 3,521,935 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	4,439,561 - 4,471,421 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	4,440,491 - 4,471,212 (+)	Ensembl	panpan1.1		panPan2

HDGFL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	55,204,861 - 55,224,543 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	55,204,868 - 55,224,528 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	54,933,184 - 54,956,226 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	55,863,117 - 55,886,396 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	55,849,820 - 55,886,379 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	54,925,065 - 54,947,720 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	55,405,613 - 55,428,631 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	55,604,586 - 55,627,320 (-)	NCBI		UU_Cfam_GSD_1.0

HDGFL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	74,332,106 - 74,357,040 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	74,331,891 - 74,357,037 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	74,824,918 - 74,850,041 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HDGFL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	4,200,031 - 4,230,941 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	4,200,077 - 4,230,731 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	3,962,491 - 3,998,027 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hdgfl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	5,227,034 - 5,251,268 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	5,231,497 - 5,251,402 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013361427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040290669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000007394 ⟹ ENSSTOP00000006607

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936588	2,590,329 - 2,618,604 (+)	Ensembl

RefSeq Acc Id:

XM_013361427 ⟹ XP_013216881

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	215,219,517 - 215,244,257 (-)	NCBI
SpeTri2.0	NW_004936588	2,590,557 - 2,615,241 (+)	NCBI

Sequence:

show sequence

GCTGCCGTCGCCGCCGCCGCTGCCGCTTCCCGCGGCCTGGGCCTCCCGCCGCCAGCATGCCACACGCCTTCAAGCCCGGAGACTTGGTGTTCGCCAAGATGAAGGGCTACCCTCACTGGCCGGCCCGG
ATTGATGACATTGCTGATGGTGCTGTGAAGCCCCCACCCAACAAATACCCCATCTTCTTCTTTGGTACACACGAAACAGCTTTCCTGGGACCCAAGGACTTGTTCCCCTACGACAAATGTAAAGATAA
GTACGGGAAACCCAACAAGAGGAAAGGCTTCAATGAGGGGCTGTGGGAGATTCAGAACAACCCCCACGCCAGCTACAGTGCTCCTCCGCCGGTGAGTTCCTCCGACAGTGAGGCCCCTGAAGCTGACC
CAGCAGGTGGGAGCGACGCAGACGAGGACGAGGACGACCGGGGAGTCATGGCCGTCACAGCCGTTACTGCCACAGCTGCCAGTGACAGGATGGAAAGTGACTCTGATTCTGATAAGAGTAGTGACAAC
AGTGGCCTGAAACGGAAGACATCAGCATTGAAGATGTCAGTCTCAAAACGAGCTCGAAAAGCCTCCAGCGACCTGGATGAGGCCAGTGTGTCTCCATCTGCAGAGGACTCGGAGAGCTCATCAGAGTC
AGCAAAGACCAGTGACCAGGACTTCACCCCCGAGAAGAAAGCTGTGGTCCGAGCGCCACGACGGGGCCCTCTGGGAGGACGGAAGAAAAAGAAGGTGCCATCAGCCTCTGACTCGGAATCCAAAGCAG
ATTCAGACGGGGCTAAGGAGGAGCCAGTAGCCTTGGAGAGGTCAGCGTCTTCCTCCTCCTCTTCCCCCTCCTCCTCCGACTCGGATGTGTCTGTCAAGAAGCCTCCACGCGGCAGAAAGCCAGTTGAG
AAGCCTCCCCCAAAGCCCCGAGGGCGGAAACCAAAGCCTGAGCGGCCACCATCCTCCTCCAGCAGTGACAGCGACAGTGACGAAGTGGACCGCATCAGCGAATGGAAGCGTCGGGATGAGGAGCGACG
GCGGGAGCTGGAGGCGCGGCGGAGGCGTGAGCAGGAAGAGGAGCTGAGGCGGCTACGGGAGCAGGAGAAGGAGGAGAAGGAGCGGCGGCGGGAGCGTGCAGAGCGGGGGGACATTGAGTGTGGGGGCA
GTGGCGGCAGCAGTGGAGAGGAGCTCAGGACGGAGGACGAGCCCCTCAGGAAGCGCGGCCGCCGGGCCCGGGGCCGTGGACCCCCGTCCTCCTCTGACTCAGAGCCAGAGGCTGACCTAGAGAGAGAG
GCAAAGAAAGCGACCAAGAAGTTGCAACCGCAAAGCACAGACCCCCCGAGGAAACCCAGCCAGAAGGAGAAGAGAGGGCGGCCTGAGGAGAAGCCCAGAGCCAGGCCCATGAAGGTAGAACGAACCCG
AAAGCGGTCCGAAGGCTTCCAGTTAGATCGGAAGGTGGAGAAGAAGAAAGAACCTTCTGTGGAGGAGAAACTCCAGAAACTGCACAGTGAGATCAAGTTTGCCCTCAAGGTTGACAACCCGGACGTGA
AGAGGTGTCTTAATGCACTGGAAGAACTAGGGACCCTGCAGGTGACCTCTCAGATCCTACAGAAGAACACAGATGTGGTGGCCACACTGAAGAAGATTCGCCGATATAAGGCCAACAAGGATGTGATG
GAGAAGGCAGCAGAAGTCTATACTCGGCTCAAGTCACGGGTCCTGGGACCAAAGATTGAGGCGATCCAGAAAGCGAACAAAACTGGAACAGAGAAGGAGAAGGCCGAGGCAGAGAAGGCTGAGGAGAA
GCTGGCTGGGGAAGAGGCCCCCAAGGAGAAGGTGGAGGAGGAGCCCAGCACCGGTCTCTCAGCACCTGTGAATGGTGAGGCCATGTCCCAGAAAGGGGAGACTGTGGAGGACAAGGAGCAGGAGGACG
GGCAGGACTCTGAGGAGGGCCTGAGACGTGGCTCCTCTGAAGATCTGCACAACAACAGCCTACGGGAGGGCCCTGATCTGGACAGGCCTGGGAGCGAGGAGCAGGAGCATGAGAGGGCGCAGCTGGAC
TCGGAGTCCCTGGACGAGGAGAGCTGAGCCCAGCAGCCCTGGCCTTGGCCCAGCTCAGCCACAGTAGAGTCCTAGGCCTGCCCCGTCTCTTTCCCAGCCTCCCATGAGAGCAGAGAACTTTTGGGGAA
ACGCTGTGCTGTTTGTATTTGTCTCCTTGGGTTTTTTTCTGCCTAATTTCTGTGATTTCTGACCGACATGAAATGAC

hide sequence

RefSeq Acc Id:

XM_040290668 ⟹ XP_040146602

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	215,219,517 - 215,248,069 (-)	NCBI

RefSeq Acc Id:

XM_040290669 ⟹ XP_040146603

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	215,219,517 - 215,234,122 (-)	NCBI


Protein RefSeqs	XP_013216881	(Get FASTA)	NCBI Sequence Viewer
	XP_040146602	(Get FASTA)	NCBI Sequence Viewer
	XP_040146603	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006607.3
GenBank Protein	KAG3280683	(Get FASTA)	NCBI Sequence Viewer
	KAG3280684	(Get FASTA)	NCBI Sequence Viewer
	KAG3280685	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013216881 ⟸ XM_013361427
- Peptide Label:	isoform X1
- UniProtKB:	I3M9M7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPHAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPNKRKGFNEGLWEIQNNPHASYSAPPPVSSSDSEAPEADPAGGSDADEDEDDRGVMAV TAVTATAASDRMESDSDSDKSSDNSGLKRKTSALKMSVSKRARKASSDLDEASVSPSAEDSESSSESAKTSDQDFTPEKKAVVRAPRRGPLGGRKKKKVPSASDSESKADSDGAKEEPVALERSASSS SSSPSSSDSDVSVKKPPRGRKPVEKPPPKPRGRKPKPERPPSSSSSDSDSDEVDRISEWKRRDEERRRELEARRRREQEEELRRLREQEKEEKERRRERAERGDIECGGSGGSSGEELRTEDEPLRKR GRRARGRGPPSSSDSEPEADLEREAKKATKKLQPQSTDPPRKPSQKEKRGRPEEKPRARPMKVERTRKRSEGFQLDRKVEKKKEPSVEEKLQKLHSEIKFALKVDNPDVKRCLNALEELGTLQVTSQI LQKNTDVVATLKKIRRYKANKDVMEKAAEVYTRLKSRVLGPKIEAIQKANKTGTEKEKAEAEKAEEKLAGEEAPKEKVEEEPSTGLSAPVNGEAMSQKGETVEDKEQEDGQDSEEGLRRGSSEDLHNN SLREGPDLDRPGSEEQEHERAQLDSESLDEES hide sequence

RefSeq Acc Id:	XP_040146602 ⟸ XM_040290668
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040146603 ⟸ XM_040290669
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000006607 ⟸ ENSSTOT00000007394

Protein Domains

PWWP

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007383	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007394.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.930.10	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
InterPro	HIVI-bd_sf	UniProtKB/TrEMBL
	LEDGF_IBD	UniProtKB/TrEMBL
	PWWP_dom	UniProtKB/TrEMBL
	TFIIS/LEDGF_dom_sf	UniProtKB/TrEMBL
NCBI Gene	LOC101974303	ENTREZGENE
PANTHER	HEPATOMA-DERIVED GROWTH FACTOR-RELATED	UniProtKB/TrEMBL
	HEPATOMA-DERIVED GROWTH FACTOR-RELATED PROTEIN 2	UniProtKB/TrEMBL
Pfam	LEDGF	UniProtKB/TrEMBL
	PWWP	UniProtKB/TrEMBL
PROSITE	PWWP	UniProtKB/TrEMBL
SMART	PWWP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF140576	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	I3M9M7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-05-02	Hdgfl2	HDGF like 2	LOC101974303	hepatoma-derived growth factor-related protein 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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