LOC101971629 (core histone macro-H2A.1) - Rat Genome Database

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Gene: LOC101971629 (core histone macro-H2A.1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101971629
Name: core histone macro-H2A.1
RGD ID: 12638237
Description: ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); double-stranded methylated DNA binding (ortholog); INVOLVED IN dosage compensation (ortholog); establishment of protein localization to chromatin (ortholog); negative regulation of cell cycle G2/M phase transition (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Barr body (ortholog); chromatin (ortholog); condensed chromosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
LOC101971629
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,352 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MACROH2A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5135,333,900 - 135,399,914 (-)EnsemblGRCh38hg38GRCh38
GRCh385135,334,381 - 135,401,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh375134,670,071 - 134,735,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365134,697,970 - 134,763,476 (-)NCBINCBI36hg18NCBI36
Build 345134,697,969 - 134,762,802NCBI
Celera5130,793,877 - 130,859,396 (-)NCBI
Cytogenetic Map5q31.1NCBI
HuRef5129,857,754 - 129,923,276 (-)NCBIHuRef
CHM1_15134,102,741 - 134,168,247 (-)NCBICHM1_1
Macroh2a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391356,221,435 - 56,283,439 (-)NCBIGRCm39mm39
GRCm39 Ensembl1356,221,432 - 56,284,174 (-)Ensembl
GRCm381356,073,622 - 56,135,626 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1356,073,619 - 56,136,361 (-)EnsemblGRCm38mm10GRCm38
MGSCv371356,174,983 - 56,236,911 (-)NCBIGRCm37mm9NCBIm37
MGSCv361356,083,796 - 56,145,137 (-)NCBImm8
Celera1357,128,470 - 57,190,557 (-)NCBICelera
Cytogenetic Map13B1NCBI
Macroh2a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2178,479,331 - 8,542,071 (+)NCBI
Rnor_6.0 Ensembl179,282,675 - 9,344,678 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0179,282,109 - 9,344,698 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01711,440,567 - 11,502,758 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41714,457,307 - 14,520,963 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11714,457,306 - 14,520,963 (+)NCBI
Celera178,563,234 - 8,625,826 (+)NCBICelera
Cytogenetic Map17p14NCBI
LOC102008188
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540830,497,531 - 30,550,118 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540830,497,531 - 30,550,095 (-)NCBIChiLan1.0ChiLan1.0
LOC100974858
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15136,868,521 - 136,933,834 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5136,868,521 - 136,933,834 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05130,727,065 - 130,791,932 (-)NCBIMhudiblu_PPA_v0panPan3
MACROH2A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11123,369,957 - 23,448,235 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1123,370,300 - 23,438,219 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1122,118,904 - 22,197,335 (-)NCBI
ROS_Cfam_1.01124,196,790 - 24,265,246 (-)NCBI
UMICH_Zoey_3.11122,875,051 - 22,953,381 (-)NCBI
UNSW_CanFamBas_1.01122,740,600 - 22,819,048 (-)NCBI
UU_Cfam_GSD_1.01123,384,272 - 23,469,034 (-)NCBI
H2AFY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2137,535,131 - 137,623,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12137,535,128 - 137,623,886 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22143,054,432 - 143,135,657 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H2AFY
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12338,113,212 - 38,178,227 (-)NCBI
ChlSab1.1 Ensembl2338,113,195 - 38,168,382 (-)Ensembl
LOC101706296
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473311,650,067 - 11,714,399 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005333189   ⟹   XP_005333246
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005333190   ⟹   XP_005333247
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005333191   ⟹   XP_005333248
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,352 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005333193   ⟹   XP_005333250
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213123,471,582 - 123,531,449 (-)NCBI
SpeTri2.0NW_0049365972,496,489 - 2,556,352 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333246 (Get FASTA)   NCBI Sequence Viewer  
  XP_005333247 (Get FASTA)   NCBI Sequence Viewer  
  XP_005333248 (Get FASTA)   NCBI Sequence Viewer  
  XP_005333250 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005333250   ⟸   XM_005333193
- Peptide Label: isoform X4
- UniProtKB: A0A287D4V0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005333247   ⟸   XM_005333190
- Peptide Label: isoform X2
- UniProtKB: I3MNP9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005333246   ⟸   XM_005333189
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005333248   ⟸   XM_005333191
- Peptide Label: isoform X3
- Sequence:
Protein Domains
Histone   Histone_H2A_C   Macro


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014864 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000013316 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000027170 UniProtKB/TrEMBL
  ENSSTOP00000028554 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014865 UniProtKB/TrEMBL
  ENSSTOT00000030252 UniProtKB/TrEMBL
  ENSSTOT00000038630 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  3.40.220.10 UniProtKB/TrEMBL
InterPro Core_histone_macro-H2A UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Macro_dom UniProtKB/TrEMBL
  Macro_dom-like UniProtKB/TrEMBL
  Macro_H2A UniProtKB/TrEMBL
NCBI Gene LOC101971629 ENTREZGENE
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Macro UniProtKB/TrEMBL
PIRSF Core_histone_macro-H2A UniProtKB/TrEMBL
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE MACRO UniProtKB/TrEMBL
SMART A1pp UniProtKB/TrEMBL
  H2A UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF52949 UniProtKB/TrEMBL
UniProt A0A287D0Z4_ICTTR UniProtKB/TrEMBL
  A0A287D4V0 ENTREZGENE, UniProtKB/TrEMBL
  I3MNP9 ENTREZGENE, UniProtKB/TrEMBL