Pycard (PYD and CARD domain containing) - Rat Genome Database

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Gene: Pycard (PYD and CARD domain containing) Ictidomys tridecemlineatus
Analyze
Symbol: Pycard
Name: PYD and CARD domain containing
RGD ID: 12732097
Description: ENCODES a protein that exhibits protease binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); inflammatory response (ortholog); positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Albuminuria (ortholog); branched-chain keto acid dehydrogenase kinase deficiency (ortholog); FOUND IN AIM2 inflammasome complex (ortholog); canonical inflammasome complex (ortholog); IkappaB kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: apoptosis-associated speck-like protein containing a CARD
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,452,827 - 125,454,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,550,679 - 13,552,805 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,550,702 - 13,552,774 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
activation of innate immune response  (IEA)
cellular response to interleukin-1  (IEA)
cellular response to lipopolysaccharide  (IEA)
cellular response to tumor necrosis factor  (IEA)
defense response to Gram-negative bacterium  (IEA)
defense response to Gram-positive bacterium  (IEA,ISO)
defense response to virus  (IEA)
inflammatory response  (IEA,ISO)
innate immune response  (IEA)
intrinsic apoptotic signaling pathway by p53 class mediator  (IEA)
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator  (IEA)
macropinocytosis  (IEA)
myeloid dendritic cell activation  (IEA)
myeloid dendritic cell activation involved in immune response  (IEA)
negative regulation of canonical NF-kappaB signal transduction  (IEA)
negative regulation of cytokine production involved in inflammatory response  (IEA)
negative regulation of interferon-beta production  (IEA)
NLRP3 inflammasome complex assembly  (IEA)
positive regulation of actin filament polymerization  (IEA)
positive regulation of activated T cell proliferation  (IEA)
positive regulation of adaptive immune response  (IEA)
positive regulation of antigen processing and presentation of peptide antigen via MHC class II  (IEA)
positive regulation of apoptotic process  (IEA)
positive regulation of chemokine production  (IEA)
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  (ISO)
positive regulation of defense response to virus by host  (IEA)
positive regulation of ERK1 and ERK2 cascade  (IEA)
positive regulation of extrinsic apoptotic signaling pathway  (IEA)
positive regulation of inflammatory response  (IEA)
positive regulation of interleukin-1 beta production  (IEA,ISO)
positive regulation of interleukin-10 production  (IEA)
positive regulation of interleukin-6 production  (IEA)
positive regulation of interleukin-8 production  (IEA)
positive regulation of JNK cascade  (IEA)
positive regulation of macrophage cytokine production  (IEA,ISO)
positive regulation of non-canonical NF-kappaB signal transduction  (IEA)
positive regulation of phagocytosis  (IEA)
positive regulation of release of cytochrome c from mitochondria  (IEA)
positive regulation of T cell activation  (IEA)
positive regulation of T cell migration  (IEA)
positive regulation of tumor necrosis factor production  (IEA)
positive regulation of type II interferon production  (IEA)
protein homooligomerization  (IEA)
regulation of apoptotic process  (IEA,ISO)
regulation of autophagy  (IEA,ISO)
regulation of inflammatory response  (IEA,ISO)
regulation of intrinsic apoptotic signaling pathway  (IEA)
regulation of protein stability  (IEA)
regulation of tumor necrosis factor-mediated signaling pathway  (IEA)
response to bacterium  (IEA,ISO)
tumor necrosis factor-mediated signaling pathway  (IEA)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Pycard
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,452,827 - 125,454,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,550,679 - 13,552,805 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,550,702 - 13,552,774 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PYCARD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,201,486 - 31,202,760 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,201,486 - 31,203,450 (-)EnsemblGRCh38hg38GRCh38
GRCh371631,212,807 - 31,214,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,120,308 - 31,121,752 (-)NCBINCBI36Build 36hg18NCBI36
Celera1629,083,777 - 29,085,221 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,774,423 - 28,775,713 (-)NCBIHuRef
CHM1_11632,530,520 - 32,531,810 (-)NCBICHM1_1
T2T-CHM13v2.01631,588,907 - 31,590,181 (-)NCBIT2T-CHM13v2.0
Pycard
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,590,545 - 127,593,039 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,588,880 - 127,593,039 (-)EnsemblGRCm39 Ensembl
GRCm387127,991,373 - 127,993,867 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,989,708 - 127,993,867 (-)EnsemblGRCm38mm10GRCm38
MGSCv377135,134,887 - 135,137,381 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,783,251 - 127,784,895 (-)NCBIMGSCv36mm8
Celera7127,826,342 - 127,828,839 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.88NCBI
Pycard
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,601,657 - 182,603,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,601,174 - 182,602,955 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,952,277 - 190,953,310 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01198,138,364 - 198,139,397 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,808,830 - 190,809,863 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,438,029 - 199,439,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,437,832 - 199,439,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,460,883 - 206,461,916 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,276,089 - 187,277,122 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,425,969 - 187,427,003 (-)NCBI
Celera1180,252,771 - 180,253,804 (-)NCBICelera
Cytogenetic Map1q37NCBI
LOC100991103
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11639,210,581 - 39,211,917 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,764,386 - 23,765,732 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,572,332 - 31,573,828 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,571,363 - 31,573,828 (-)Ensemblpanpan1.1panPan2
PYCARD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,049,352 - 17,051,348 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,049,705 - 17,051,240 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,624,878 - 18,626,631 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,180,447 - 17,182,202 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,180,546 - 17,182,254 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,980,664 - 16,982,415 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,899,792 - 16,901,536 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,211,709 - 17,213,472 (+)NCBIUU_Cfam_GSD_1.0
PYCARD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,306,099 - 17,307,786 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,305,921 - 17,307,521 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,564,758 - 17,566,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PYCARD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,892,332 - 27,894,386 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,889,230 - 27,893,697 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,569,924 - 1,571,817 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pycard
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478214,247,864 - 14,249,000 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478214,247,333 - 14,249,861 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005323884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000013407   ⟹   ENSSTOP00000012013
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493650113,550,679 - 13,552,805 (-)Ensembl
RefSeq Acc Id: XM_005323884   ⟹   XP_005323941
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344125,452,827 - 125,454,078 (-)NCBI
SpeTri2.0NW_00493650113,550,702 - 13,552,774 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005323941 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012013.2
GenBank Protein KAG3259697 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323941   ⟸   XM_005323884
- UniProtKB: I3MKY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012013   ⟸   ENSSTOT00000013407
Protein Domains
CARD   Pyrin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013406 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013407.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
InterPro CARD UniProtKB/TrEMBL
  CARD8/ASC/NALP1_CARD UniProtKB/TrEMBL
  DAPIN UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
NCBI Gene Pycard ENTREZGENE
PANTHER APOPTOSIS-ASSOCIATED SPECK-LIKE PROTEIN CONTAINING A CARD UniProtKB/TrEMBL
  NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
  PYRIN UniProtKB/TrEMBL
PROSITE CARD UniProtKB/TrEMBL
  DAPIN UniProtKB/TrEMBL
SMART PYRIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
UniProt I3MKY3 ENTREZGENE, UniProtKB/TrEMBL