Cbl (Cbl proto-oncogene) - Rat Genome Database

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Gene: Cbl (Cbl proto-oncogene) Ictidomys tridecemlineatus
Analyze
Symbol: Cbl
Name: Cbl proto-oncogene
RGD ID: 12490997
Description: ENCODES a protein that exhibits phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); protein kinase binding (ortholog); protein tyrosine kinase binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to nerve growth factor stimulus (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); B-lymphoblastic leukemia/lymphoma with hyperdiploidy (ortholog); FOUND IN axon (ortholog); focal adhesion (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase CBL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,214,875 - 101,314,342 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,136,511 - 4,228,288 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,136,389 - 4,235,746 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
acute myeloid leukemia  (ISO)
B-Cell Chronic Lymphocytic Leukemia  (ISO)
B-lymphoblastic leukemia/lymphoma with hyperdiploidy  (ISO)
Carotid Artery Injuries  (ISO)
CD3epsilon deficiency  (ISO)
chromosome 11 partial duplication syndrome  (ISO)
colorectal cancer  (ISO)
congenital diaphragmatic hernia  (ISO)
congenital disorder of glycosylation Ij  (ISO)
congenital myasthenic syndrome 13  (ISO)
congestive heart failure  (ISO)
cryptorchidism  (ISO)
Developmental Disabilities  (ISO)
Dilated Cardiomyopathy with Left Ventricular Noncompaction  (ISO)
Dwarfism  (ISO)
Experimental Arthritis  (ISO)
Experimental Leukemia  (ISO)
Familial Atrial Fibrillation 14  (ISO)
genetic disease  (ISO)
Growth Disorders  (ISO)
hematologic cancer  (ISO)
Hematologic Neoplasms  (ISO)
hepatocellular carcinoma  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
hyperglycemia  (ISO)
immunodeficiency 17  (ISO)
immunodeficiency 18  (ISO)
immunodeficiency 19  (ISO)
inflammatory bowel disease 28  (ISO)
isolated microphthalmia 5  (ISO)
juvenile amyotrophic lateral sclerosis 2  (ISO)
juvenile myelomonocytic leukemia  (ISO)
long QT syndrome 10  (ISO)
lung non-small cell carcinoma  (ISO)
Lymphatic Metastasis  (ISO)
lymphopenia  (ISO)
male infertility  (ISO)
malignant ovarian germ cell neoplasm  (ISO)
microcephaly  (ISO)
multiple myeloma  (ISO)
myeloid neoplasm  (ISO)
Myocardial Reperfusion Injury  (ISO)
Neurodevelopmental Disorders  (ISO)
Noonan Like Syndrome  (ISO)
Noonan syndrome  (ISO)
Noonan syndrome 1  (ISO)
Noonan Syndrome-Like Disorder with or without Juvenile Myelomonocytic Leukemia  (ISO)
osteosarcoma  (ISO)
ovarian germ cell cancer  (ISO)
Peripheral Nerve Injuries  (ISO)
RASopathy  (ISO)
rhabdomyosarcoma  (ISO)
schizophrenia  (ISO)
transient cerebral ischemia  (ISO)
type 1 diabetes mellitus  (ISO)
vasculitis  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cbl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947101,214,875 - 101,314,342 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365424,136,511 - 4,228,288 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365424,136,389 - 4,235,746 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811119,206,339 - 119,308,149 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11119,206,298 - 119,313,926 (+)EnsemblGRCh38hg38GRCh38
GRCh3711119,077,049 - 119,178,859 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611118,582,200 - 118,684,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411118,582,199 - 118,684,068NCBI
Celera11116,236,024 - 116,339,059 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11115,017,373 - 115,119,562 (+)NCBIHuRef
CHM1_111118,963,252 - 119,065,411 (+)NCBICHM1_1
T2T-CHM13v2.011119,226,712 - 119,328,785 (+)NCBIT2T-CHM13v2.0
Cbl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,054,273 - 44,145,556 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,054,273 - 44,145,346 (-)EnsemblGRCm39 Ensembl
GRCm38944,142,976 - 44,234,259 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,142,976 - 44,234,049 (-)EnsemblGRCm38mm10GRCm38
MGSCv37943,957,345 - 44,042,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36943,900,257 - 43,985,041 (-)NCBIMGSCv36mm8
Celera941,406,821 - 41,486,735 (-)NCBICelera
Cytogenetic Map9A5.1- A5.2NCBI
cM Map924.72NCBI
Cbl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,384,656 - 53,468,067 (-)NCBIGRCr8
mRatBN7.2844,487,824 - 44,571,620 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl844,489,410 - 44,571,176 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0848,481,256 - 48,564,775 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl848,489,036 - 48,564,722 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,105,710 - 47,183,347 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,135,357 - 47,211,889 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera844,074,668 - 44,158,034 (-)NCBICelera
Cytogenetic Map8q22NCBI
Cbl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541220,307,011 - 20,388,539 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541220,307,011 - 20,388,539 (+)NCBIChiLan1.0ChiLan1.0
CBL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,911,371 - 120,015,890 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111121,015,030 - 121,119,390 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011114,044,996 - 114,149,204 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,973,187 - 118,076,459 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,973,187 - 118,074,671 (+)Ensemblpanpan1.1panPan2
CBL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1514,600,409 - 14,676,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl514,607,013 - 14,676,956 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha514,653,516 - 14,730,936 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0514,543,644 - 14,621,193 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl514,549,582 - 14,620,322 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1514,681,808 - 14,759,290 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0514,585,944 - 14,663,491 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0514,626,100 - 14,703,693 (-)NCBIUU_Cfam_GSD_1.0
CBL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl946,416,938 - 46,512,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1946,416,937 - 46,512,855 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2951,452,262 - 51,549,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11110,581,049 - 110,679,284 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1110,581,143 - 110,674,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604315,352,300 - 15,453,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cbl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478414,577,515 - 14,667,575 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478414,577,582 - 14,671,816 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000005328   ⟹   ENSSTOP00000004776
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365424,136,511 - 4,228,288 (+)Ensembl
RefSeq Acc Id: XM_005328365   ⟹   XP_005328422
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,214,880 - 101,314,342 (+)NCBI
SpeTri2.0NW_0049365424,136,389 - 4,235,746 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285367   ⟹   XP_040141301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,214,875 - 101,306,831 (+)NCBI
RefSeq Acc Id: XM_040285368   ⟹   XP_040141302
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947101,215,688 - 101,314,342 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005328422 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141301 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141302 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000004776.3
GenBank Protein KAG3286720 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328422   ⟸   XM_005328365
- Peptide Label: isoform X1
- UniProtKB: I3M5W4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141301   ⟸   XM_040285367
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040141302   ⟸   XM_040285368
- Peptide Label: isoform X3
- UniProtKB: I3M5W4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000004776   ⟸   ENSSTOT00000005328
Protein Domains
Cbl-PTB   RING-type   UBA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005298 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005328.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.930.20 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
  DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro Adaptor_Cbl UniProtKB/TrEMBL
  Adaptor_Cbl_EF_hand-like UniProtKB/TrEMBL
  Adaptor_Cbl_N_dom_sf UniProtKB/TrEMBL
  Adaptor_Cbl_N_hlx UniProtKB/TrEMBL
  Adaptor_Cbl_SH2-like UniProtKB/TrEMBL
  Cbl_PTB UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
  Znf_C3HC4_RING-type UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
NCBI Gene Cbl ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE CBL UniProtKB/TrEMBL
  PTHR23007 UniProtKB/TrEMBL
Pfam Cbl_N UniProtKB/TrEMBL
  Cbl_N2 UniProtKB/TrEMBL
  Cbl_N3 UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  zf-C3HC4 UniProtKB/TrEMBL
PROSITE CBL_PTB UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF46934 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF47668 UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt I3M5W4 ENTREZGENE, UniProtKB/TrEMBL