Ikbkg (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma) - Rat Genome Database

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Gene: Ikbkg (inhibitor of nuclear factor kappa B kinase regulatory subunit gamma) Ictidomys tridecemlineatus
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Symbol: Ikbkg
Name: inhibitor of nuclear factor kappa B kinase regulatory subunit gamma
RGD ID: 12595624
Description: ENCODES a protein that exhibits identical protein binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); linear polyubiquitin binding (ortholog); INVOLVED IN activation of NF-kappaB-inducing kinase activity (ortholog); anoikis (ortholog); B cell homeostasis (ortholog); PARTICIPATES IN FasL mediated signaling pathway; interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); Behcet's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); IkappaB kinase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma; inhibitor of nuclear factor kappa B kinase subunit gamma; NF-kappa-B essential modulator
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,519,768 - 119,569,193 (+)NCBI
SpeTri2.0NW_0049368091,280,254 - 1,306,964 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Ikbkg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,519,768 - 119,569,193 (+)NCBI
SpeTri2.0NW_0049368091,280,254 - 1,306,964 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IKBKG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX154,541,199 - 154,565,046 (+)EnsemblGRCh38hg38GRCh38
GRCh38X154,541,238 - 154,565,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X153,769,453 - 153,793,261 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X153,423,653 - 153,446,455 (+)NCBINCBI36hg18NCBI36
Build 34X153,339,765 - 153,356,964NCBI
CeleraX153,931,508 - 153,953,200 (+)NCBI
Cytogenetic MapXq28NCBI
HuRefX142,346,885 - 142,356,952 (+)NCBIHuRef
CHM1_1X153,682,224 - 153,705,030 (+)NCBICHM1_1
Ikbkg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X73,436,883 - 73,498,013 (+)NCBIGRCm39mm39
GRCm39 EnsemblX73,436,896 - 73,497,460 (+)Ensembl
GRCm38X74,393,233 - 74,456,792 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX74,393,290 - 74,453,854 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X71,638,630 - 71,699,117 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X70,682,424 - 70,704,240 (+)NCBImm8
CeleraX65,647,484 - 65,706,592 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
Ikbkg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X152,216,485 - 152,241,476 (+)NCBI
Rnor_6.0 EnsemblX156,257,173 - 156,270,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X156,254,187 - 156,280,046 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01151,994,689 - 152,019,874 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X160,386,558 - 160,420,190 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X160,483,372 - 160,496,394 (+)NCBI
Celera1135,659,513 - 135,672,876 (-)NCBICelera
Cytogenetic MapXq37NCBI
Ikbkg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555801,053,823 - 1,069,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555801,053,823 - 1,069,802 (+)NCBIChiLan1.0ChiLan1.0
IKBKG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X153,869,352 - 153,876,677 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,854,493 - 153,876,092 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X143,988,720 - 144,010,078 (+)NCBIMhudiblu_PPA_v0panPan3
IKBKG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X122,232,052 - 122,253,499 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX122,235,878 - 122,250,562 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X125,373,537 - 125,395,176 (+)NCBI
UMICH_Zoey_3.1X121,142,500 - 121,164,137 (+)NCBI
UNSW_CanFamBas_1.0X123,657,571 - 123,679,200 (+)NCBI
UU_Cfam_GSD_1.0X123,419,351 - 123,440,993 (+)NCBI
IKBKG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,036,508 - 125,056,453 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,035,575 - 125,056,445 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,478,840 - 143,498,934 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IKBKG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,781,975 - 128,816,039 (+)NCBI
ChlSab1.1 EnsemblX128,787,785 - 128,806,083 (+)Ensembl
Ikbkg
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624946997,571 - 1,015,748 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005340656   ⟹   XP_005340713
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,548,330 - 119,569,193 (+)NCBI
SpeTri2.0NW_0049368091,286,080 - 1,306,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013365344   ⟹   XP_013220798
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,548,330 - 119,569,193 (+)NCBI
SpeTri2.0NW_0049368091,286,080 - 1,306,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021720428   ⟹   XP_021576103
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049368091,280,255 - 1,306,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021720429   ⟹   XP_021576104
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049368091,280,254 - 1,306,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021720430   ⟹   XP_021576105
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,548,168 - 119,569,193 (+)NCBI
SpeTri2.0NW_0049368091,285,941 - 1,306,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040287241   ⟹   XP_040143175
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,547,990 - 119,569,193 (+)NCBI
RefSeq Acc Id: XM_040287242   ⟹   XP_040143176
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,547,989 - 119,569,193 (+)NCBI
RefSeq Acc Id: XM_040287243   ⟹   XP_040143177
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,519,768 - 119,569,193 (+)NCBI
RefSeq Acc Id: XM_040287257   ⟹   XP_040143191
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,519,772 - 119,569,193 (+)NCBI
RefSeq Acc Id: XM_040287260   ⟹   XP_040143194
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X119,547,990 - 119,569,193 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_013220798   ⟸   XM_013365344
- Peptide Label: isoform X5
- UniProtKB: A0A287DAI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340713   ⟸   XM_005340656
- Peptide Label: isoform X5
- UniProtKB: A0A287DAI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576104   ⟸   XM_021720429
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021576103   ⟸   XM_021720428
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021576105   ⟸   XM_021720430
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040143177   ⟸   XM_040287243
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040143191   ⟸   XM_040287257
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040143176   ⟸   XM_040287242
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143175   ⟸   XM_040287241
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040143194   ⟸   XM_040287260
- Peptide Label: isoform X6
Protein Domains
CCHC NOA-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011082 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009940 UniProtKB/TrEMBL
  ENSSTOP00000026959 UniProtKB/TrEMBL
  ENSSTOP00000030582 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011079 UniProtKB/TrEMBL
  ENSSTOT00000034927 UniProtKB/TrEMBL
  ENSSTOT00000039389 UniProtKB/TrEMBL
InterPro CC2-LZ_dom UniProtKB/TrEMBL
  NEMO_N UniProtKB/TrEMBL
  NEMO_ZF UniProtKB/TrEMBL
NCBI Gene Ikbkg ENTREZGENE
Pfam CC2-LZ UniProtKB/TrEMBL
  NEMO UniProtKB/TrEMBL
PROSITE ZF_CCHC_NOA UniProtKB/TrEMBL
UniProt A0A287D0D9_ICTTR UniProtKB/TrEMBL
  A0A287DAI3 ENTREZGENE, UniProtKB/TrEMBL
  I3MGM9_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Ikbkg  inhibitor of nuclear factor kappa B kinase regulatory subunit gamma    inhibitor of nuclear factor kappa B kinase subunit gamma  Symbol and/or name change 5135510 APPROVED