Snw1 (SNW domain containing 1) - Rat Genome Database

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Gene: Snw1 (SNW domain containing 1) Ictidomys tridecemlineatus
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Symbol: Snw1
Name: SNW domain containing 1
RGD ID: 12491953
Description: ENCODES a protein that exhibits enzyme binding (inferred); Notch binding (inferred); nuclear androgen receptor binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of neurogenesis (ortholog); Schwann cell proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Brain Injuries (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN chromatin (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog); SMAD protein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SNW domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,537,625 - 25,574,412 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,494,562 - 6,531,600 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,494,556 - 6,531,297 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snw1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,537,625 - 25,574,412 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,494,562 - 6,531,600 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,494,556 - 6,531,297 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNW1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,717,599 - 77,761,156 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,717,599 - 77,761,207 (-)EnsemblGRCh38hg38GRCh38
GRCh371478,183,942 - 78,227,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361477,253,695 - 77,297,250 (-)NCBINCBI36Build 36hg18NCBI36
Build 341477,253,696 - 77,297,250NCBI
Celera1458,222,440 - 58,266,009 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1458,349,919 - 58,393,992 (-)NCBIHuRef
CHM1_11478,123,415 - 78,166,965 (-)NCBICHM1_1
T2T-CHM13v2.01471,926,934 - 71,971,187 (-)NCBIT2T-CHM13v2.0
Snw1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,496,680 - 87,519,069 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,495,845 - 87,519,044 (-)EnsemblGRCm39 Ensembl
GRCm381287,449,910 - 87,472,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,449,075 - 87,472,274 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,790,860 - 88,813,249 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,339,401 - 88,349,540 (-)NCBIMGSCv36mm8
Celera1288,914,532 - 88,936,919 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.67NCBI
Snw1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,826,374 - 112,850,459 (-)NCBIGRCr8
mRatBN7.26107,095,450 - 107,119,536 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,095,457 - 107,119,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6107,264,352 - 107,288,363 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,563,169 - 107,587,180 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,932,867 - 106,956,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,483,698 - 111,507,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,483,703 - 111,507,782 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,764,412 - 120,788,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,688,742 - 111,712,826 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6104,915,183 - 104,939,184 (-)NCBICelera
Cytogenetic Map6q31NCBI
Snw1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,561,568 - 1,601,492 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,561,562 - 1,601,492 (-)NCBIChiLan1.0ChiLan1.0
SNW1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,803,745 - 78,848,492 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11478,020,250 - 78,064,997 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01458,271,830 - 58,315,773 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,472,381 - 77,517,314 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,472,387 - 77,517,315 (-)Ensemblpanpan1.1panPan2
SNW1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,478,924 - 50,512,360 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,479,338 - 50,512,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha850,166,344 - 50,199,802 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,713,229 - 50,746,681 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,713,236 - 50,746,564 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,375,212 - 50,408,764 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,398,347 - 50,432,000 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,797,025 - 50,830,653 (-)NCBIUU_Cfam_GSD_1.0
SNW1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,718,036 - 100,749,356 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,718,298 - 100,749,414 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNW1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,976,597 - 55,020,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2454,977,083 - 55,019,988 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605343,163,503 - 43,207,653 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snw1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,161,662 - 24,191,937 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,161,974 - 24,191,943 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000003293   ⟹   ENSSTOP00000002944
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364886,495,026 - 6,527,913 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000041541   ⟹   ENSSTOP00000029424
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364886,494,562 - 6,531,600 (-)Ensembl
RefSeq Acc Id: XM_005321279   ⟹   XP_005321336
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864025,537,625 - 25,574,412 (+)NCBI
SpeTri2.0NW_0049364886,494,556 - 6,531,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040276345   ⟹   XP_040132279
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864025,538,491 - 25,574,412 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005321336 (Get FASTA)   NCBI Sequence Viewer  
  XP_040132279 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002944.3
  ENSSTOP00000029424.1
GenBank Protein KAG3260609 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321336   ⟸   XM_005321279
- Peptide Label: isoform X1
- UniProtKB: A0A287D7B1 (UniProtKB/TrEMBL),   I3M207 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040132279   ⟸   XM_040276345
- Peptide Label: isoform X2
- UniProtKB: I3M207 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000029424   ⟸   ENSSTOT00000041541
RefSeq Acc Id: ENSSTOP00000002944   ⟸   ENSSTOT00000003293

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003286 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003293.3 UniProtKB/TrEMBL
  ENSSTOT00000041541.1 UniProtKB/TrEMBL
InterPro SKI-int_prot_SKIP UniProtKB/TrEMBL
  SKI-int_prot_SKIP_SNW-dom UniProtKB/TrEMBL
NCBI Gene Snw1 ENTREZGENE
PANTHER PTHR12096 UniProtKB/TrEMBL
  SNW DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SKIP_SNW UniProtKB/TrEMBL
UniProt A0A287D7B1 ENTREZGENE, UniProtKB/TrEMBL
  I3M207 ENTREZGENE, UniProtKB/TrEMBL