Cops3 (COP9 signalosome subunit 3)

Gene: Cops3 (COP9 signalosome subunit 3) Ictidomys tridecemlineatus

Analyze

Symbol:

Cops3

Name:

COP9 signalosome subunit 3

RGD ID:

12548144

Description:

INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Birt-Hogg-Dube syndrome (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN COP9 signalosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

COP9 signalosome complex subunit 3; COP9 signalosome subunit 3, transcript variant X1; COP9 signalosome subunit 3, transcript variant X2; COP9 signalosome subunit 3, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,936,099 - 61,961,655 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	905,252 - 931,408 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	905,593 - 931,148 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Birt-Hogg-Dube syndrome (ISO)

common variable immunodeficiency 2 (ISO)

genetic disease (ISO)

Hepatomegaly (ISO)

Joubert syndrome 1 (ISO)

Potocki-Lupski syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

in utero embryonic development (IEA,ISO)

protein deneddylation (IEA)

regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (IEA)

ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

COP9 signalosome (IEA,ISO)

cytoplasm (IEA)

cytosol (IEA)

nucleoplasm (IEA)

nucleus (IEA)

perinuclear region of cytoplasm (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cops3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,936,099 - 61,961,655 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	905,252 - 931,408 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	905,593 - 931,148 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COPS3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	17,246,616 - 17,281,246 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	17,246,616 - 17,281,273 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	17,149,930 - 17,184,560 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	17,090,864 - 17,125,316 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	17,090,865 - 17,125,316	NCBI
Celera	17	18,089,725 - 18,124,196 (-)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	16,902,830 - 16,937,477 (-)	NCBI		HuRef
CHM1_1	17	17,159,638 - 17,194,346 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	17,192,637 - 17,227,324 (-)	NCBI		T2T-CHM13v2.0

Cops3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	59,708,621 - 59,739,080 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	59,708,621 - 59,730,664 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	59,817,795 - 59,848,245 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	59,817,795 - 59,839,838 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	59,631,306 - 59,653,269 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	60,354,384 - 60,376,347 (-)	NCBI		MGSCv36	mm8
MGSCv36	11	59,633,999 - 59,655,962 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	37.8	NCBI

Cops3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,117,664 - 45,151,868 (-)	NCBI		GRCr8
mRatBN7.2	10	44,618,115 - 44,652,807 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	44,618,115 - 44,641,597 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	49,318,474 - 49,341,861 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	48,808,835 - 48,832,218 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	44,312,440 - 44,335,827 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	46,182,680 - 46,206,083 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,182,687 - 46,206,135 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	45,938,610 - 45,962,047 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	46,139,837 - 46,163,246 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	46,153,461 - 46,176,869 (-)	NCBI
Celera	10	43,879,656 - 43,903,024 (-)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

Cops3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955577	638,749 - 664,390 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955577	639,616 - 664,390 (+)	NCBI	ChiLan1.0	ChiLan1.0

COPS3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	51,764,384 - 51,799,287 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	56,476,072 - 56,510,971 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	34,013,180 - 34,047,546 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	38,944,506 - 38,978,514 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	38,944,618 - 38,978,235 (+)	Ensembl	panpan1.1		panPan2

COPS3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	42,143,397 - 42,169,509 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	42,143,474 - 42,169,517 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	42,283,352 - 42,309,239 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	42,251,785 - 42,277,904 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	42,251,786 - 42,280,691 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	42,218,758 - 42,244,870 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	42,166,098 - 42,192,196 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	42,358,201 - 42,384,316 (+)	NCBI		UU_Cfam_GSD_1.0

COPS3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	60,994,310 - 61,024,846 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	61,000,562 - 61,023,920 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	63,034,590 - 63,057,951 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COPS3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	16,280,490 - 16,331,538 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666059	4,596,000 - 4,632,806 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cops3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	4,124,586 - 4,150,933 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	4,125,188 - 4,150,933 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021736020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269647	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000005430 ⟹ ENSSTOP00000004859

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936741	905,252 - 931,408 (-)	Ensembl

RefSeq Acc Id:

XM_005339447 ⟹ XP_005339504

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	61,936,099 - 61,961,655 (+)	NCBI
SpeTri2.0	NW_004936741	905,593 - 931,148 (-)	NCBI

Sequence:

show sequence

AGTGACGTCAGGCCTCTCCGGAGGCCCTCTGGTGGATCGCCGCGGCCCCTCCTCCCCGAGCGGC
CGCCTTTTCCCGCGCGAGCTGCCTCTGGTGCTCGGGCCGCCCGCGGGGAAACATGGCGTCCGCC
CTGGAACAGTTCGTGAACAGTGTCCGACAACTCTCGGCTCAAGGGCAAATGACCCAGCTTTGTG
AACTGATCAACAAGAGCGGGGAACTCCTTGCGAAGAACTTATCCCATCTGGACACTGTACTAGG
GGCTTTGGATGTACAAGAACACTCCTTGGGTGTCCTTGCTGTTTTGTTTGTGAAGTTTTCTATG
CCCAGTGTTCCTGACTTTGAAACATTATTCTCACAGGTTCAGCTTTTCATCAGTACTTGTAATG
GAGAGCACATTCGATATGCAACAGACACTTTTGCTGGGCTTTGCCATCAGCTAACAAATGCACT
TGTGGAAAGAAAACAGCCCCTGCGAGGAATTGGCATCCTTAAACAAGCCATAGACAAGATGCAG
ATGAATACAAACCAGCTGACCTCAATACACGCTGATCTCTGCCAGCTTTGTTTGCTGGCAAAGT
GCTTTAAACCTGCCCTTCCATATCTTGATGTGGACATGATGGATATCTGTAAAGAGAACGGAGC
CTATGATGCAAAACACTTTTTATGTTACTATTATTATGGAGGGATGATCTATACTGGGCTGAAG
AACTTTGAAAGAGCACTGTACTTTTATGAACAGGCTATAACTACTCCTGCCATGGCAGTCAGTC
ATATCATGTTGGAATCATATAAAAAATATATTCTAGTGTCTTTGATATTACTCGGCAAAGTACA
GCAGCTACCGAAATACACGTCTCAGATTGTGGGTAGATTCATTAAGCCTCTTAGTAATGCATAC
CATGAGTTAGCACAAGTTTATTCAACTAATAACCCTTCAGAACTCCGAAACCTGGTGAACAAGC
ACAGTGAAACTTTCACCCGCGATAACAACATGGGACTGGTGAAGCAATGTTTATCTTCTCTCTA
TAAGAAGAACATTCAGAGGCTAACAAAGACATTTTTAACACTATCATTACAAGATATGGCAAGT
CGTGTGCAGTTATCTGGACCTCAGGAGGCAGAAAAATATGTTCTACACATGATAGAAGATGGTG
AAATTTTTGCAAGTATTAATCAGAAGGATGGTATGGTCAGTTTCCATGATAATCCTGAAAAATA
CAATAACCCAGCCATGCTTCATAACATCGATCAAGAGATGCTGAAGTGCATAGAGCTGGATGAG
AGACTGAAGGCCATGGACCAGGAGATCACAGTGAATCCCCAGTTCGTGCAAAAGAGTATGGGCT
CACAAGAAGATGATTCAGGAAACAAACCCTCCAGTTACTCCTGAAACTAACACCCATCCCAAGT
ACAACAAGAAAACCTGGCAGTCACCTTCGCCACAGCGAAGTTACAAGGGCAGCAGGGAGTACAA
GCCTGTTCCACCTGGACATTAAGAAATTCAGTTTTGTTTTGACATCTTCAGCCCTATGTGCTTT
CAGAAAACCATTCTCTCTGCAAAGAACAGAAAAAAATTTTCAAACTTTAGAGTCTGTTGTGGAT
TTATTTATCCTCAGATTATTGTTATTGCATTAAATTTACTTTTTGTTTTAATTCCTTCAA

hide sequence

RefSeq Acc Id:

XM_013364814 ⟹ XP_013220268

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	61,936,825 - 61,961,655 (+)	NCBI
SpeTri2.0	NW_004936741	905,593 - 930,484 (-)	NCBI

Sequence:

show sequence

TCAGCAGCCAGCCGGCGCAAGCTGGGGAGCCTCCGCACCTATTTTGGTCCTAAAGAATGCCAAG
GGAGCTCTCGCTGATGGGACTCCATTTCTATGGTGTGGAGTTGTTATCTTGATTATTTTGCCCT
TGTTTTTCATGCTCTCTGGCTCATGCATCTCATCATCTGAATATGCCGAATACTTGACTCAGGA
TTAGAGTGGGCAAATGACCCAGCTTTGTGAACTGATCAACAAGAGCGGGGAACTCCTTGCGAAG
AACTTATCCCATCTGGACACTGTACTAGGGGCTTTGGATGTACAAGAACACTCCTTGGGTGTCC
TTGCTGTTTTGTTTGTGAAGTTTTCTATGCCCAGTGTTCCTGACTTTGAAACATTATTCTCACA
GGTTCAGCTTTTCATCAGTACTTGTAATGGAGAGCACATTCGATATGCAACAGACACTTTTGCT
GGGCTTTGCCATCAGCTAACAAATGCACTTGTGGAAAGAAAACAGCCCCTGCGAGGAATTGGCA
TCCTTAAACAAGCCATAGACAAGATGCAGATGAATACAAACCAGCTGACCTCAATACACGCTGA
TCTCTGCCAGCTTTGTTTGCTGGCAAAGTGCTTTAAACCTGCCCTTCCATATCTTGATGTGGAC
ATGATGGATATCTGTAAAGAGAACGGAGCCTATGATGCAAAACACTTTTTATGTTACTATTATT
ATGGAGGGATGATCTATACTGGGCTGAAGAACTTTGAAAGAGCACTGTACTTTTATGAACAGGC
TATAACTACTCCTGCCATGGCAGTCAGTCATATCATGTTGGAATCATATAAAAAATATATTCTA
GTGTCTTTGATATTACTCGGCAAAGTACAGCAGCTACCGAAATACACGTCTCAGATTGTGGGTA
GATTCATTAAGCCTCTTAGTAATGCATACCATGAGTTAGCACAAGTTTATTCAACTAATAACCC
TTCAGAACTCCGAAACCTGGTGAACAAGCACAGTGAAACTTTCACCCGCGATAACAACATGGGA
CTGGTGAAGCAATGTTTATCTTCTCTCTATAAGAAGAACATTCAGAGGCTAACAAAGACATTTT
TAACACTATCATTACAAGATATGGCAAGTCGTGTGCAGTTATCTGGACCTCAGGAGGCAGAAAA
ATATGTTCTACACATGATAGAAGATGGTGAAATTTTTGCAAGTATTAATCAGAAGGATGGTATG
GTCAGTTTCCATGATAATCCTGAAAAATACAATAACCCAGCCATGCTTCATAACATCGATCAAG
AGATGCTGAAGTGCATAGAGCTGGATGAGAGACTGAAGGCCATGGACCAGGAGATCACAGTGAA
TCCCCAGTTCGTGCAAAAGAGTATGGGCTCACAAGAAGATGATTCAGGAAACAAACCCTCCAGT
TACTCCTGAAACTAACACCCATCCCAAGTACAACAAGAAAACCTGGCAGTCACCTTCGCCACAG
CGAAGTTACAAGGGCAGCAGGGAGTACAAGCCTGTTCCACCTGGACATTAAGAAATTCAGTTTT
GTTTTGACATCTTCAGCCCTATGTGCTTTCAGAAAACCATTCTCTCTGCAAAGAACAGAAAAAA
ATTTTCAAACTTTAGAGTCTGTTGTGGATTTATTTATCCTCAGATTATTGTTATTGCATTAAAT
TTACTTTTTGTTTTAATTCCTTCAA

hide sequence

RefSeq Acc Id:

XM_021736020 ⟹ XP_021591695

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	61,940,188 - 61,961,655 (+)	NCBI
SpeTri2.0	NW_004936741	905,593 - 927,060 (-)	NCBI

Sequence:

show sequence

GGCAAATGACCCAGCTTTGTGAACTGATCAACAAGAGCGGGGAACTCCTTGCGAAGAACTTATC
CCATCTGGACACTGTACTAGGGGCTTTGGATGTACAAGAACACTCCTTGGGTGTCCTTGCTGTT
TTGTTTGTGAAGTTTTCTATGCCCAGTGTTCCTGACTTTGAAACATTATTCTCACAGGTTCAGC
TTTTCATCAGTACTTGTAATGGAGAGCACATTCGATATGCAACAGACACTTTTGCTGGGCTTTG
CCATCAGCTAACAAATGCACTTGTGGAAAGAAAACAGTGACAACATAAGATCCATTGTGCTGCC
ATCTTTGAGAACTTATCTGAAAGAGATGTCATTTCTGACAGCCCCTGCGAGGAATTGGCATCCT
TAAACAAGCCATAGACAAGATGCAGATGAATACAAACCAGCTGACCTCAATACACGCTGATCTC
TGCCAGCTTTGTTTGCTGGCAAAGTGCTTTAAACCTGCCCTTCCATATCTTGATGTGGACATGA
TGGATATCTGTAAAGAGAACGGAGCCTATGATGCAAAACACTTTTTATGTTACTATTATTATGG
AGGGATGATCTATACTGGGCTGAAGAACTTTGAAAGAGCACTGTACTTTTATGAACAGGCTATA
ACTACTCCTGCCATGGCAGTCAGTCATATCATGTTGGAATCATATAAAAAATATATTCTAGTGT
CTTTGATATTACTCGGCAAAGTACAGCAGCTACCGAAATACACGTCTCAGATTGTGGGTAGATT
CATTAAGCCTCTTAGTAATGCATACCATGAGTTAGCACAAGTTTATTCAACTAATAACCCTTCA
GAACTCCGAAACCTGGTGAACAAGCACAGTGAAACTTTCACCCGCGATAACAACATGGGACTGG
TGAAGCAATGTTTATCTTCTCTCTATAAGAAGAACATTCAGAGGCTAACAAAGACATTTTTAAC
ACTATCATTACAAGATATGGCAAGTCGTGTGCAGTTATCTGGACCTCAGGAGGCAGAAAAATAT
GTTCTACACATGATAGAAGATGGTGAAATTTTTGCAAGTATTAATCAGAAGGATGGTATGGTCA
GTTTCCATGATAATCCTGAAAAATACAATAACCCAGCCATGCTTCATAACATCGATCAAGAGAT
GCTGAAGTGCATAGAGCTGGATGAGAGACTGAAGGCCATGGACCAGGAGATCACAGTGAATCCC
CAGTTCGTGCAAAAGAGTATGGGCTCACAAGAAGATGATTCAGGAAACAAACCCTCCAGTTACT
CCTGAAACTAACACCCATCCCAAGTACAACAAGAAAACCTGGCAGTCACCTTCGCCACAGCGAA
GTTACAAGGGCAGCAGGGAGTACAAGCCTGTTCCACCTGGACATTAAGAAATTCAGTTTTGTTT
TGACATCTTCAGCCCTATGTGCTTTCAGAAAACCATTCTCTCTGCAAAGAACAGAAAAAAATTT
TCAAACTTTAGAGTCTGTTGTGGATTTATTTATCCTCAGATTATTGTTATTGCATTAAATTTAC
TTTTTGTTTTAATTCCTTCAA

hide sequence

RefSeq Acc Id:

XM_040269646 ⟹ XP_040125580

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	61,936,711 - 61,961,655 (+)	NCBI

RefSeq Acc Id:

XM_040269647 ⟹ XP_040125581

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	61,937,455 - 61,961,655 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005339504	(Get FASTA)	NCBI Sequence Viewer
	XP_013220268	(Get FASTA)	NCBI Sequence Viewer
	XP_021591695	(Get FASTA)	NCBI Sequence Viewer
	XP_040125580	(Get FASTA)	NCBI Sequence Viewer
	XP_040125581	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004859.2
GenBank Protein	KAG3270339	(Get FASTA)	NCBI Sequence Viewer
	KAG3270340	(Get FASTA)	NCBI Sequence Viewer
	KAG3270341	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339504 ⟸ XM_005339447
- Peptide Label:	isoform X1
- UniProtKB:	I3M622 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASALEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFV KFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAI DKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIY TGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPL SNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQ DMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCI ELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS hide sequence

RefSeq Acc Id:

XP_013220268 ⟸ XM_013364814

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSVPDFETLFSQVQLF
ISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQL
CLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTP
AMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELR
NLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLH
MIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFV
QKSMGSQEDDSGNKPSSYS

hide sequence

RefSeq Acc Id:

XP_021591695 ⟸ XM_021736020

- Peptide Label:

isoform X4

- Sequence:

show sequence

MQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTG
LKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSN
AYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDM
ASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIEL
DERLKAMDQEITVNPQFVQKSMGSQEDDSGNKPSSYS

hide sequence

RefSeq Acc Id:	XP_040125580 ⟸ XM_040269646
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040125581 ⟸ XM_040269647
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000004859 ⟸ ENSSTOT00000005430

Protein Domains

PCI

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005430	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005430.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.570	UniProtKB/TrEMBL
InterPro	CSN3_C	UniProtKB/TrEMBL
	PCI_dom	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Cops3	ENTREZGENE
PANTHER	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3	UniProtKB/TrEMBL
	PTHR10758:SF1	UniProtKB/TrEMBL
Pfam	CSN3-like_C	UniProtKB/TrEMBL
	PCI	UniProtKB/TrEMBL
PROSITE	PCI	UniProtKB/TrEMBL
SMART	PINT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	I3M622	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD