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ONTOLOGY REPORT - ANNOTATIONS

Term:positive regulation of DNA repair
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Accession:GO:0045739 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of DNA repair.
Synonyms:exact_synonym: up regulation of DNA repair;   upregulation of DNA repair
 narrow_synonym: activation of DNA repair;   stimulation of DNA repair

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positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,202,668...1,217,825
Ensembl chrNW_004936738:1,202,608...1,221,321 		JBrowse link
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr5 actin related protein 5 involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936561:2,676,515...2,701,447
Ensembl chrNW_004936561:2,676,498...2,701,507 		JBrowse link
G Actr8 actin related protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:4,523,865...4,542,476
Ensembl chrNW_004936473:4,525,837...4,542,497 		JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 involved_in ISO (MGI:3698695|PMID:17121854) UniProt PMID:17121854 MGI:3698695 NCBI chrNW_004936842:452,682...476,533
Ensembl chrNW_004936842:452,681...476,513 		JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936596:3,574,507...3,582,370
Ensembl chrNW_004936596:3,574,476...3,582,421 		JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936493:4,375,393...4,863,050
Ensembl chrNW_004936493:4,375,393...4,768,399 		JBrowse link
G Brca1 BRCA1 DNA repair associated involved_in ISO (PMID:17525340), (PMID:19261748) UniProt PMID:17525340 PMID:19261748 NCBI chrNW_004936490:17,735,444...17,801,456 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936927:341,114...380,817
Ensembl chrNW_004936927:341,253...376,700 		JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chrNW_004936594:3,906,714...3,911,604
Ensembl chrNW_004936594:3,906,697...3,911,714 		JBrowse link
G Ccdc117 coiled-coil domain containing 117 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936657:2,876,417...2,888,542
Ensembl chrNW_004936657:2,876,408...2,888,566 		JBrowse link
G Cebpg CCAAT enhancer binding protein gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:2,435,672...2,439,056
Ensembl chrNW_004936570:2,438,187...2,438,639 		JBrowse link
G Dhx9 DExH-box helicase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:6,896,487...6,934,938
Ensembl chrNW_004936481:6,896,359...6,935,623 		JBrowse link
G Egfr epidermal growth factor receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:7664335) UniProt PMID:7664335 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Eya2 EYA transcriptional coactivator and phosphatase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936514:6,223,745...6,401,985
Ensembl chrNW_004936514:6,223,719...6,341,326 		JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:12,191,391...12,295,380
Ensembl chrNW_004936474:12,191,389...12,295,458 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936560:1,325,521...1,466,216
Ensembl chrNW_004936560:1,337,842...1,462,285 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898 		JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Ino80b INO80 complex subunit B involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936556:678,073...681,157
Ensembl chrNW_004936556:677,944...681,147 		JBrowse link
G Ino80c INO80 complex subunit C involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936517:9,632,870...9,649,525
Ensembl chrNW_004936517:9,632,870...9,649,527 		JBrowse link
G Ino80d INO80 complex subunit D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936631:2,405,056...2,474,798
Ensembl chrNW_004936631:2,410,300...2,474,811 		JBrowse link
G Ino80e INO80 complex subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:12,463,592...12,472,271
Ensembl chrNW_004936501:12,463,520...12,472,257 		JBrowse link
G Mcrs1 microspherule protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:7,277,739...7,287,389
Ensembl chrNW_004936512:7,276,584...7,287,427 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Nfrkb nuclear factor related to kappaB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936572:2,435,875...2,468,848
Ensembl chrNW_004936572:2,435,847...2,471,655 		JBrowse link
G Npas2 neuronal PAS domain protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936661:96,312...176,395
Ensembl chrNW_004936661:95,752...210,097 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chrNW_004936728:428,028...538,413
Ensembl chrNW_004936728:428,028...541,530 		JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:24939902) UniProt PMID:24939902 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Rnf168 ring finger protein 168 involved_in ISO (PMID:23760478)
(PMID:19203578), (PMID:19203579)		 UniProt PMID:19203578 PMID:19203579 PMID:23760478 NCBI chrNW_004936784:1,073,236...1,094,575 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:18001824), (PMID:18001825) UniProt PMID:18001824 PMID:18001825 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Tfpt TCF3 fusion partner involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:234,978...239,425
Ensembl chrNW_004936994:234,992...239,425 		JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114 		JBrowse link
G Tmem161a transmembrane protein 161A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936596:2,274,989...2,287,288
Ensembl chrNW_004936596:2,274,989...2,287,580 		JBrowse link
G Trim28 tripartite motif containing 28 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937062:126,832...132,938
Ensembl chrNW_004937062:126,708...134,366 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) HGNC-UCL PMID:16129784
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936638:1,242,950...1,289,376
Ensembl chrNW_004936638:1,242,893...1,290,512 		JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 involved_in ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:19261748) UniProt PMID:17525340 PMID:17525341 PMID:17525342 PMID:19261748 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Yy1 YY1 transcription factor involved_in ISO (MGI:5638510|PMID:23979016) ComplexPortal PMID:23979016 MGI:5638510 NCBI chrNW_004936604:3,911,407...3,945,405 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam168a family with sequence similarity 168 member A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936498:2,601,341...2,784,446
Ensembl chrNW_004936498:2,605,788...2,670,164 		JBrowse link
G LOC101962552 protein FAM168A-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936855:689,226...690,369 JBrowse link
G Rps3 ribosomal protein S3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,198,189...4,204,531
Ensembl chrNW_004936498:4,198,130...4,204,528 		JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:181,457...209,286
Ensembl chrNW_004936606:186,223...208,499 		JBrowse link
G Fam178b family with sequence similarity 178 member B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936744:808,845...894,128
Ensembl chrNW_004936744:810,446...893,049 		JBrowse link
G Fmn2 formin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:9,832,790...10,169,488
Ensembl chrNW_004936526:9,833,128...10,169,267 		JBrowse link
G Foxm1 forkhead box M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:3,185,289...3,198,427
Ensembl chrNW_004936606:3,185,982...3,198,378 		JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:16,744,607...16,923,209
Ensembl chrNW_004936486:16,744,570...16,923,543 		JBrowse link
G Ooep oocyte expressed protein involved_in ISO (MGI:6467697|PMID:29125140) UniProt PMID:29125140 MGI:6467697 NCBI chrNW_004937318:2,623...3,622 JBrowse link
G Sirt1 sirtuin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:10,296,097...10,316,673
Ensembl chrNW_004936521:10,296,097...10,322,215 		JBrowse link
G Sirt6 sirtuin 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,387,162...2,394,066
Ensembl chrNW_004936588:2,386,977...2,394,096 		JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936523:8,563,662...8,634,576
Ensembl chrNW_004936523:8,563,410...8,634,585 		JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936600:4,715,504...4,766,273
Ensembl chrNW_004936600:4,721,327...4,765,915 		JBrowse link
G Spidr scaffold protein involved in DNA repair involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,921,755...5,041,573
Ensembl chrNW_004936590:4,921,542...5,316,195 		JBrowse link
G Spire1 spire type actin nucleation factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:2,151,990...2,292,307
Ensembl chrNW_004936626:2,151,827...2,227,374 		JBrowse link
G Spire2 spire type actin nucleation factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:236,135...246,004
Ensembl chrNW_004936641:236,135...245,916 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N involved_in ISO (PMID:16129784) ComplexPortal PMID:16129784
G Ube2v2 ubiquitin conjugating enzyme E2 V2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,637,858...4,670,789
Ensembl chrNW_004936590:4,637,065...4,670,827 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:482,795...503,996
Ensembl chrNW_004936543:482,944...498,385 		JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936765:667,107...670,627
Ensembl chrNW_004936765:667,053...670,672 		JBrowse link
G Actl6a actin like 6A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936566:3,577,412...3,587,182
Ensembl chrNW_004936566:3,573,974...3,595,534 		JBrowse link
G Actr2 actin related protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:9,980,228...10,021,417
Ensembl chrNW_004936491:9,979,427...10,022,043 		JBrowse link
G Arid2 AT-rich interaction domain 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:4,020,303...4,199,390
Ensembl chrNW_004936512:4,020,966...4,196,459 		JBrowse link
G Blm BLM RecQ like helicase acts_upstream_of_or_within ISO (PMID:25520194) MGI PMID:25520194 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
G Brd8 bromodomain containing 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936531:7,333,974...7,361,855
Ensembl chrNW_004936531:7,333,907...7,362,114 		JBrowse link
G Crebbp CREB binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:552,447...663,237
Ensembl chrNW_004936694:553,753...663,617 		JBrowse link
G Dmap1 DNA methyltransferase 1 associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:25,486,447...25,495,909
Ensembl chrNW_004936474:25,486,462...25,495,992 		JBrowse link
G Ep400 E1A binding protein p400 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,212,063...2,297,730
Ensembl chrNW_004936660:2,212,243...2,295,862 		JBrowse link
G Epc1 enhancer of polycomb homolog 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936574:966,655...1,050,537
Ensembl chrNW_004936574:964,619...1,050,571 		JBrowse link
G Epc2 enhancer of polycomb homolog 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:28,489,620...28,625,975
Ensembl chrNW_004936469:28,488,377...28,625,975 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G Fancb FA complementation group B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25520194) TreeGrafter
MGI		 PMID:25520194 GO_REF:0000118 NCBI chrNW_004936470:4,305,220...4,323,456
Ensembl chrNW_004936470:4,305,740...4,323,374 		JBrowse link
G Fus FUS RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:13,529,732...13,541,102
Ensembl chrNW_004936501:13,529,803...13,540,764 		JBrowse link
G Hdgfl2 HDGF like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,590,557...2,615,241
Ensembl chrNW_004936588:2,590,329...2,618,604 		JBrowse link
G Helq helicase, POLQ like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936738:1,224,072...1,265,887
Ensembl chrNW_004936738:1,224,312...1,265,786 		JBrowse link
G Ing3 inhibitor of growth family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936605:4,154,276...4,179,627
Ensembl chrNW_004936605:4,151,202...4,179,689 		JBrowse link
G Kat5 lysine acetyltransferase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,767,526...3,775,416
Ensembl chrNW_004936599:3,766,242...3,776,128 		JBrowse link
G LOC101961559 E3 ubiquitin-protein ligase RNF126 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:231,723...237,969
Ensembl chrNW_004936588:255,639...260,291
Ensembl chrNW_004936588:255,639...260,291 		JBrowse link
G Mbtd1 mbt domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:10,567,146...10,633,130
Ensembl chrNW_004936490:10,587,010...10,630,049 		JBrowse link
G Meaf6 MYST/Esa1 associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:19,732,278...19,754,228
Ensembl chrNW_004936474:19,729,465...19,754,261 		JBrowse link
G Morf4l1 mortality factor 4 like 1 involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chrNW_004936471:37,073,920...37,097,216
Ensembl chrNW_004936471:37,073,895...37,097,235 		JBrowse link
G Morf4l2 mortality factor 4 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936499:10,636,711...10,647,442
Ensembl chrNW_004936499:10,636,776...10,647,442 		JBrowse link
G Mrgbp MRG domain binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,303,870...10,308,007
Ensembl chrNW_004936514:10,303,597...10,307,185 		JBrowse link
G Mrnip MRN complex interacting protein involved_in ISO (PMID:27568553) UniProt PMID:27568553 NCBI chrNW_004936739:926,678...955,024 JBrowse link
G Ooep oocyte expressed protein involved_in ISO (MGI:6272426|PMID:29955025) UniProt PMID:29955025 MGI:6272426 NCBI chrNW_004937318:2,623...3,622 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Peli1 pellino E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:8,985,074...9,040,863
Ensembl chrNW_004936491:8,985,074...9,041,244 		JBrowse link
G Pias4 protein inhibitor of activated STAT 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:2,287,941...2,302,875
Ensembl chrNW_004936588:2,287,996...2,302,691 		JBrowse link
G Prmt1 protein arginine methyltransferase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,492,032...3,502,738
Ensembl chrNW_004936664:3,491,920...3,504,667 		JBrowse link
G Rad51ap1 RAD51 associated protein 1 involved_in ISO (PMID:17996710), (PMID:17996711) UniProt PMID:17996710 PMID:17996711 NCBI chrNW_004936606:4,697,369...4,716,006 JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO (PMID:23115235) UniProt PMID:23115235 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Ruvbl1 RuvB like AAA ATPase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936798:559,706...572,710
Ensembl chrNW_004936798:559,778...572,506 		JBrowse link
G Ruvbl2 RuvB like AAA ATPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:2,995,212...3,010,563
Ensembl chrNW_004936664:2,995,213...3,010,853 		JBrowse link
G Skp2 S-phase kinase associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:5,635,856...5,664,057
Ensembl chrNW_004936518:5,637,331...5,664,778 		JBrowse link
G Timeless timeless circadian regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:780,021...792,856
Ensembl chrNW_004936646:780,087...792,837 		JBrowse link
G Trrap transformation/transcription domain associated protein involved_in ISO (PMID:27153538) ComplexPortal PMID:27153538 NCBI chrNW_004936750:1,245,926...1,360,226
Ensembl chrNW_004936750:1,248,320...1,359,473 		JBrowse link
G Vps72 vacuolar protein sorting 72 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:1,381,454...1,395,319
Ensembl chrNW_004936580:1,381,440...1,395,332 		JBrowse link
G Was WASP actin nucleation promoting factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936721:634,685...641,248
Ensembl chrNW_004936721:634,706...641,082 		JBrowse link
G Wdr48 WD repeat domain 48 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,307,913...28,351,727
Ensembl chrNW_004936473:28,307,875...28,354,279 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
G Yeats4 YEATS domain containing 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936545:7,179,806...7,205,600
Ensembl chrNW_004936545:7,179,723...7,206,691 		JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase involved_in ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004936526:8,936,096...8,965,155
Ensembl chrNW_004936526:8,935,991...8,965,367 		JBrowse link
G Kmt5b lysine methyltransferase 5B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:1,928,172...1,983,983
Ensembl chrNW_004936599:1,928,145...1,984,008 		JBrowse link
G Kmt5c lysine methyltransferase 5C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936886:596,949...602,959
Ensembl chrNW_004936886:595,782...604,286 		JBrowse link
G LOC101962206 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20620605), (PMID:21491884) UniProt PMID:20620605 PMID:21491884 NCBI chrNW_004936577:3,761,078...3,771,864 JBrowse link
G LOC101967900 lysine-specific demethylase 4D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24550317) MGI
Ensembl		 PMID:24550317 GO_REF:0000107 NCBI chrNW_004936674:53,200...73,042 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:538,703...542,901
Ensembl chrNW_004936474:538,625...542,901 		JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,291,282...3,297,581
Ensembl chrNW_004936529:3,291,269...3,299,992 		JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936664:3,649,020...3,656,545
Ensembl chrNW_004936664:3,649,833...3,656,035 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936590:4,722,914...4,887,615
Ensembl chrNW_004936590:4,722,873...4,890,156 		JBrowse link
G Rif1 replication timing regulatory factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:26,045,500...26,105,980
Ensembl chrNW_004936469:26,048,953...26,105,997 		JBrowse link
G Shld1 shieldin complex subunit 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936485:13,179,218...13,267,980
Ensembl chrNW_004936485:13,176,426...13,267,953 		JBrowse link
G Shld2 shieldin complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:5,315,297...5,400,752
Ensembl chrNW_004936601:5,315,261...5,396,301 		JBrowse link
G Shld3 shieldin complex subunit 3 involved_in ISO (PMID:29656893) UniProt PMID:29656893
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,686,070...1,838,315
Ensembl chrNW_004936672:1,685,734...1,838,315 		JBrowse link
G Top2b DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chrNW_004936473:17,146,576...17,189,589
Ensembl chrNW_004936473:17,143,894...17,189,605 		JBrowse link
G Wrap53 WD repeat containing antisense to TP53 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:936,184...952,784
Ensembl chrNW_004936595:936,487...952,791 		JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:562,038...567,709
Ensembl chrNW_004936629:562,022...567,822 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISO (PMID:15014079) UniProt PMID:15014079 NCBI chrNW_004936472:25,236,728...25,246,585
Ensembl chrNW_004936472:25,236,728...25,246,580 		JBrowse link
G Prkcg protein kinase C gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936994:87,525...105,125
Ensembl chrNW_004936994:87,519...105,134 		JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:3,102,468...3,147,601
Ensembl chrNW_004936526:3,102,039...3,147,642 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:752,571...783,746
Ensembl chrNW_004936706:751,108...783,777 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    positive regulation of biological process 6057
      positive regulation of response to stimulus 2234
        positive regulation of DNA repair 116
          positive regulation of base-excision repair 3
          positive regulation of double-strand break repair + 72
          positive regulation of error-prone translesion synthesis 0
          positive regulation of mismatch repair 3
          positive regulation of single strand break repair + 2
Path 2
Term Annotations click to browse term
  biological_process 15871
    metabolic process 9527
      cellular metabolic process 8291
        cellular aromatic compound metabolic process 4861
          nucleobase-containing compound metabolic process 4641
            nucleic acid metabolic process 4163
              DNA metabolic process 874
                DNA repair 493
                  regulation of DNA repair 171
                    positive regulation of DNA repair 116
                      positive regulation of base-excision repair 3
                      positive regulation of double-strand break repair + 72
                      positive regulation of error-prone translesion synthesis 0
                      positive regulation of mismatch repair 3
                      positive regulation of single strand break repair + 2
paths to the root