Mms22l (MMS22 like, DNA repair protein) - Rat Genome Database

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Gene: Mms22l (MMS22 like, DNA repair protein) Ictidomys tridecemlineatus
Analyze
Symbol: Mms22l
Name: MMS22 like, DNA repair protein
RGD ID: 12530159
Description: ENCODES a protein that exhibits single-stranded DNA binding (inferred); INVOLVED IN chromatin organization (inferred); DNA repair (inferred); double-strand break repair via homologous recombination (inferred); FOUND IN FACT complex (ortholog); MCM complex (ortholog); nuclear replication fork (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936699486,491 - 608,562 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936699486,510 - 608,532 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Mms22l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936699486,491 - 608,562 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936699486,510 - 608,532 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMS22L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38697,142,161 - 97,284,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl697,142,161 - 97,283,217 (-)EnsemblGRCh38hg38GRCh38
GRCh37697,590,037 - 97,731,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36697,696,758 - 97,837,773 (-)NCBINCBI36Build 36hg18NCBI36
Celera698,233,679 - 98,375,346 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef695,025,862 - 95,167,382 (-)NCBIHuRef
CHM1_1697,852,099 - 97,993,079 (-)NCBICHM1_1
T2T-CHM13v2.0698,315,584 - 98,457,957 (-)NCBIT2T-CHM13v2.0
Mms22l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39424,496,451 - 24,602,950 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm39 Ensembl
GRCm38424,496,451 - 24,602,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37424,423,609 - 24,530,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36424,595,792 - 24,693,579 (+)NCBIMGSCv36mm8
Celera424,232,868 - 24,339,314 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.36NCBI
Mms22l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8542,994,382 - 43,110,371 (+)NCBIGRCr8
mRatBN7.2538,197,707 - 38,313,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl538,197,779 - 38,313,745 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx540,288,528 - 40,404,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0541,887,573 - 42,003,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0541,820,871 - 41,936,780 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0538,844,502 - 38,960,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl538,844,488 - 38,961,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0543,473,579 - 43,590,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4539,528,968 - 39,645,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1539,529,547 - 39,645,295 (+)NCBI
Celera537,133,558 - 37,249,635 (+)NCBICelera
Cytogenetic Map5q21NCBI
Mms22l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541123,125,121 - 23,245,950 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541123,125,203 - 23,245,941 (-)NCBIChiLan1.0ChiLan1.0
MMS22L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25117,181,663 - 117,332,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16115,059,841 - 115,211,068 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0694,989,906 - 95,127,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1698,873,354 - 99,011,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl698,861,299 - 99,011,773 (-)Ensemblpanpan1.1panPan2
MMS22L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11255,584,884 - 55,713,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1255,588,888 - 55,713,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1255,404,529 - 55,533,735 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01256,400,771 - 56,530,067 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1256,400,779 - 56,530,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11255,737,270 - 55,866,290 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01255,598,005 - 55,727,110 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01255,845,599 - 55,974,832 (-)NCBIUU_Cfam_GSD_1.0
MMS22L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,306,073 - 64,459,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,306,078 - 64,459,956 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2172,728,444 - 72,948,597 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMS22L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11376,611,574 - 76,750,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1376,611,517 - 76,750,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604048,920,825 - 49,061,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mms22l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248108,035,864 - 8,168,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000011579   ⟹   ENSSTOP00000010393
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936699487,230 - 608,431 (+)Ensembl
Ensembl Acc Id: ENSSTOT00000032877   ⟹   ENSSTOP00000028830
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936699486,491 - 608,562 (+)Ensembl
RefSeq Acc Id: XM_005338013   ⟹   XP_005338070
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBI
SpeTri2.0NW_004936699486,510 - 608,532 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040283127   ⟹   XP_040139061
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBI
RefSeq Acc Id: XR_005732913
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494690,129,802 - 90,241,514 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338070 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139061 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010393.3
  ENSSTOP00000028830.1
GenBank Protein KAG3289964 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005338070   ⟸   XM_005338013
- Peptide Label: isoform X1
- UniProtKB: A0A287D5N8 (UniProtKB/TrEMBL),   I3MHL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139061   ⟸   XM_040283127
- Peptide Label: isoform X2
- UniProtKB: I3MHL6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000010393   ⟸   ENSSTOT00000011579
Ensembl Acc Id: ENSSTOP00000028830   ⟸   ENSSTOT00000032877

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011557 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011579.3 UniProtKB/TrEMBL
  ENSSTOT00000032877.1 UniProtKB/TrEMBL
InterPro MMS22-like UniProtKB/TrEMBL
  MMS22L_C UniProtKB/TrEMBL
  MMS22L_N UniProtKB/TrEMBL
NCBI Gene Mms22l ENTREZGENE
PANTHER PROTEIN MMS22-LIKE UniProtKB/TrEMBL
  PTHR28547 UniProtKB/TrEMBL
Pfam MMS22L_C UniProtKB/TrEMBL
  MMS22L_N UniProtKB/TrEMBL
UniProt A0A287D5N8 ENTREZGENE, UniProtKB/TrEMBL
  I3MHL6 ENTREZGENE, UniProtKB/TrEMBL