Mms22l (MMS22-like, DNA repair protein) - Rat Genome Database

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Gene: Mms22l (MMS22-like, DNA repair protein) Mus musculus
Analyze
Symbol: Mms22l
Name: MMS22-like, DNA repair protein
RGD ID: 1620630
MGI Page MGI
Description: Predicted to enable single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination; protein localization to chromatin; and replication fork processing. Predicted to act upstream of or within DNA repair and chromatin organization. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of FACT complex and MCM complex. Predicted to be active in nuclear replication fork and site of double-strand break. Is expressed in cerebral cortex ventricular layer. Orthologous to human MMS22L (MMS22 like, DNA repair protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F730047E07Rik; Gm134; hypothetical protein LOC212377; methyl methanesulfonate-sensitivity protein 22-like; protein MMS22-like; uncharacterized protein LOC212377
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39424,496,451 - 24,602,950 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm39 Ensembl
GRCm38424,496,451 - 24,602,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37424,423,609 - 24,530,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36424,595,792 - 24,693,579 (+)NCBIMGSCv36mm8
Celera424,232,868 - 24,339,314 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14691545   PMID:16141072   PMID:16141073   PMID:16919269  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24652767   PMID:28378742   PMID:30973865   PMID:32325033   PMID:34321999  


Genomics

Comparative Map Data
Mms22l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39424,496,451 - 24,602,950 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm39 Ensembl
GRCm38424,496,451 - 24,602,950 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl424,496,451 - 24,602,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv37424,423,609 - 24,530,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36424,595,792 - 24,693,579 (+)NCBIMGSCv36mm8
Celera424,232,868 - 24,339,314 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map410.36NCBI
MMS22L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38697,142,161 - 97,284,035 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl697,142,161 - 97,283,217 (-)EnsemblGRCh38hg38GRCh38
GRCh37697,590,037 - 97,731,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36697,696,758 - 97,837,773 (-)NCBINCBI36Build 36hg18NCBI36
Celera698,233,679 - 98,375,346 (-)NCBICelera
Cytogenetic Map6q16.1NCBI
HuRef695,025,862 - 95,167,382 (-)NCBIHuRef
CHM1_1697,852,099 - 97,993,079 (-)NCBICHM1_1
T2T-CHM13v2.0698,315,584 - 98,457,957 (-)NCBIT2T-CHM13v2.0
Mms22l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8542,994,382 - 43,110,371 (+)NCBIGRCr8
mRatBN7.2538,197,707 - 38,313,745 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl538,197,779 - 38,313,745 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx540,288,528 - 40,404,428 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0541,887,573 - 42,003,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0541,820,871 - 41,936,780 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0538,844,502 - 38,960,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl538,844,488 - 38,961,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0543,473,579 - 43,590,298 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4539,528,968 - 39,645,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1539,529,547 - 39,645,295 (+)NCBI
Celera537,133,558 - 37,249,635 (+)NCBICelera
Cytogenetic Map5q21NCBI
Mms22l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541123,125,121 - 23,245,950 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541123,125,203 - 23,245,941 (-)NCBIChiLan1.0ChiLan1.0
MMS22L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25117,181,663 - 117,332,914 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16115,059,841 - 115,211,068 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0694,989,906 - 95,127,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1698,873,354 - 99,011,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl698,861,299 - 99,011,773 (-)Ensemblpanpan1.1panPan2
MMS22L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11255,584,884 - 55,713,996 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1255,588,888 - 55,713,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1255,404,529 - 55,533,735 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01256,400,771 - 56,530,067 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1256,400,779 - 56,530,011 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11255,737,270 - 55,866,290 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01255,598,005 - 55,727,110 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01255,845,599 - 55,974,832 (-)NCBIUU_Cfam_GSD_1.0
Mms22l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494690,119,302 - 90,241,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936699486,491 - 608,562 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936699486,510 - 608,532 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMS22L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl164,306,073 - 64,459,904 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1164,306,078 - 64,459,956 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2172,728,444 - 72,948,597 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMS22L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11376,611,574 - 76,750,893 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1376,611,517 - 76,750,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604048,920,825 - 49,061,322 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mms22l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248108,035,864 - 8,168,555 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mms22l
3491 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2833
Count of miRNA genes:835
Interacting mature miRNAs:1131
Transcripts:ENSMUST00000050446, ENSMUST00000108222, ENSMUST00000123984, ENSMUST00000131282, ENSMUST00000138567, ENSMUST00000139050, ENSMUST00000154349, ENSMUST00000154496, ENSMUST00000172622, ENSMUST00000173079
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1302010Wta1_mweight adult 1 (mouse)Not determined4868324042683429Mouse
1558992Ses8_msalmonella enteritidis susceptibility 8 (mouse)Not determined4868324042683429Mouse
1301473Triglq1_mtriglyceride QTL 1 (mouse)Not determined4868324042683429Mouse
1302125Lxw1_mlupus BXSB x NZW 1 (mouse)Not determined4868324042683429Mouse
4141302Ssrq5_mstress response QTL 5 (mouse)Not determined868324042683430Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse

Markers in Region
29.MHAa77c5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38424,573,578 - 24,573,739UniSTSGRCm38
MGSCv37424,500,725 - 24,500,886UniSTSGRCm37
Celera424,309,929 - 24,310,090UniSTS
Cytogenetic Map4A3UniSTS
Whitehead_YAC4 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_199467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006537730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK089531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY512923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE623427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX296536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK639437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000050446   ⟹   ENSMUSP00000057715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,496,544 - 24,602,946 (+)Ensembl
GRCm38.p6 Ensembl424,496,544 - 24,602,946 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108222   ⟹   ENSMUSP00000103857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,496,451 - 24,602,950 (+)Ensembl
GRCm38.p6 Ensembl424,496,451 - 24,602,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123984
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,578,848 - 24,591,208 (+)Ensembl
GRCm38.p6 Ensembl424,578,848 - 24,591,208 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131282   ⟹   ENSMUSP00000133800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,507,434 - 24,599,984 (+)Ensembl
GRCm38.p6 Ensembl424,507,434 - 24,599,984 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138567   ⟹   ENSMUSP00000134736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,496,462 - 24,503,413 (+)Ensembl
GRCm38.p6 Ensembl424,496,462 - 24,503,413 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,496,465 - 24,497,044 (+)Ensembl
GRCm38.p6 Ensembl424,496,465 - 24,497,044 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,505,162 - 24,602,949 (+)Ensembl
GRCm38.p6 Ensembl424,505,162 - 24,602,949 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154496   ⟹   ENSMUSP00000134140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,536,348 - 24,574,795 (+)Ensembl
GRCm38.p6 Ensembl424,536,348 - 24,574,795 (+)Ensembl
RefSeq Acc Id: ENSMUST00000172622   ⟹   ENSMUSP00000133658
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,497,896 - 24,529,163 (+)Ensembl
GRCm38.p6 Ensembl424,497,896 - 24,529,163 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173079
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl424,496,451 - 24,581,338 (+)Ensembl
GRCm38.p6 Ensembl424,496,451 - 24,581,338 (+)Ensembl
RefSeq Acc Id: NM_199467   ⟹   NP_955761
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,451 - 24,602,950 (+)NCBI
GRCm38424,496,451 - 24,602,950 (+)NCBI
MGSCv37424,423,609 - 24,530,097 (+)RGD
Celera424,232,868 - 24,339,314 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149739
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,451 - 24,602,950 (+)NCBI
GRCm38424,496,451 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006537730   ⟹   XP_006537793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,469 - 24,602,950 (+)NCBI
GRCm38424,496,469 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249970   ⟹   XP_011248272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,535,112 - 24,602,950 (+)NCBI
GRCm38424,535,107 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163937   ⟹   XP_036019830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,545 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163938   ⟹   XP_036019831
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,545 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163939   ⟹   XP_036019832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,517,151 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954899
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,469 - 24,602,950 (+)NCBI
GRCm38424,496,469 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954900
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,496,451 - 24,602,950 (+)NCBI
GRCm38424,496,451 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004941857
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39424,505,345 - 24,602,950 (+)NCBI
Sequence:
RefSeq Acc Id: NP_955761   ⟸   NM_199467
- UniProtKB: Q6R5F9 (UniProtKB/Swiss-Prot),   D3YXA0 (UniProtKB/Swiss-Prot),   B7ZN61 (UniProtKB/Swiss-Prot),   Q80UT0 (UniProtKB/Swiss-Prot),   B1AUR6 (UniProtKB/Swiss-Prot),   G8JL47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006537793   ⟸   XM_006537730
- Peptide Label: isoform X1
- UniProtKB: G8JL47 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011248272   ⟸   XM_011249970
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSMUSP00000134736   ⟸   ENSMUST00000138567
RefSeq Acc Id: ENSMUSP00000103857   ⟸   ENSMUST00000108222
RefSeq Acc Id: ENSMUSP00000133658   ⟸   ENSMUST00000172622
RefSeq Acc Id: ENSMUSP00000133800   ⟸   ENSMUST00000131282
RefSeq Acc Id: ENSMUSP00000134140   ⟸   ENSMUST00000154496
RefSeq Acc Id: ENSMUSP00000057715   ⟸   ENSMUST00000050446
RefSeq Acc Id: XP_036019830   ⟸   XM_036163937
- Peptide Label: isoform X1
- UniProtKB: G8JL47 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019831   ⟸   XM_036163938
- Peptide Label: isoform X2
- UniProtKB: Q6R5F9 (UniProtKB/Swiss-Prot),   D3YXA0 (UniProtKB/Swiss-Prot),   B7ZN61 (UniProtKB/Swiss-Prot),   B1AUR6 (UniProtKB/Swiss-Prot),   Q80UT0 (UniProtKB/Swiss-Prot),   G8JL47 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036019832   ⟸   XM_036163939
- Peptide Label: isoform X3
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1AUR6-F1-model_v2 AlphaFold B1AUR6 1-1238 view protein structure

Promoters
RGD ID:6835327
Promoter ID:MM_KWN:36867
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000010752,   OTTMUST00000010781,   UC008SDU.1,   UC008SDV.1,   UC008SDW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36424,423,256 - 24,423,756 (+)MPROMDB
RGD ID:6882934
Promoter ID:EPDNEW_M4918
Type:initiation region
Name:Mms22l_1
Description:Mus musculus MMS22-like, DNA repair protein , transcript variant2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38424,496,459 - 24,496,519EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684980 AgrOrtholog
Ensembl Genes ENSMUSG00000045751 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000050446.13 UniProtKB/TrEMBL
  ENSMUST00000108222 ENTREZGENE
  ENSMUST00000108222.9 UniProtKB/Swiss-Prot
  ENSMUST00000131282.4 UniProtKB/TrEMBL
  ENSMUST00000138567.9 UniProtKB/TrEMBL
  ENSMUST00000154349 ENTREZGENE
  ENSMUST00000154496.3 UniProtKB/TrEMBL
  ENSMUST00000172622.8 UniProtKB/TrEMBL
InterPro MMS22-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MMS22L_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MMS22L_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:212377 UniProtKB/Swiss-Prot
MGD MGI:2684980 ENTREZGENE
NCBI Gene 212377 ENTREZGENE
PANTHER PROTEIN MMS22-LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR28547 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MMS22L_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MMS22L_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mms22l PhenoGen
UniProt B1AUR6 ENTREZGENE
  B7ZN61 ENTREZGENE
  D3YXA0 ENTREZGENE
  G3UXE4_MOUSE UniProtKB/TrEMBL
  G3UXR9_MOUSE UniProtKB/TrEMBL
  G3UYM2_MOUSE UniProtKB/TrEMBL
  G5E925_MOUSE UniProtKB/TrEMBL
  G8JL47 ENTREZGENE, UniProtKB/TrEMBL
  MMS22_MOUSE UniProtKB/Swiss-Prot
  Q3TPX2_MOUSE UniProtKB/TrEMBL
  Q6R5F9 ENTREZGENE
  Q80UT0 ENTREZGENE
  Q8R3F6_MOUSE UniProtKB/TrEMBL
UniProt Secondary B7ZN61 UniProtKB/Swiss-Prot
  D3YXA0 UniProtKB/Swiss-Prot
  Q6R5F9 UniProtKB/Swiss-Prot
  Q80UT0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Mms22l  MMS22-like, DNA repair protein  F730047E07Rik  RIKEN cDNA F730047E07 gene  Symbol and/or name change 5135510 APPROVED