Primpol (primase and DNA directed polymerase)

Gene: Primpol (primase and DNA directed polymerase) Ictidomys tridecemlineatus

Analyze

Symbol:

Primpol

Name:

primase and DNA directed polymerase

RGD ID:

12610371

Description:

ENCODES a protein that exhibits chromatin binding (inferred); DNA primase activity (inferred); DNA-directed DNA polymerase activity (inferred); INVOLVED IN DNA replication, synthesis of primer (inferred); error-prone translesion synthesis (inferred); mitochondrial DNA repair (inferred); ASSOCIATED WITH genetic disease (ortholog); Myopia 22, Autosomal Dominant (ortholog); FOUND IN mitochondrial matrix (inferred); nucleus (inferred); replication fork (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Ccdc111; coiled-coil domain containing 111; primase and DNA directed polymerase, transcript variant X1; primase and DNA directed polymerase, transcript variant X2; primase and DNA directed polymerase, transcript variant X3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	33,412,746 - 33,573,466 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	4,534,970 - 4,569,549 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	4,536,246 - 4,571,000 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Myopia 22, Autosomal Dominant (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication, synthesis of primer (IEA)

error-prone translesion synthesis (IEA)

mitochondrial DNA repair (IEA)

mitochondrial DNA replication (IEA)

R-loop processing (IEA)

replication fork processing (IEA)

response to UV (IEA)

translesion synthesis (IEA)

Cellular Component

mitochondrial matrix (IEA)

nucleus (IEA)

replication fork (IEA)

Molecular Function

chromatin binding (IEA)

DNA primase activity (IEA)

DNA-directed DNA polymerase activity (IEA)

manganese ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Primpol
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	33,412,746 - 33,573,466 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	4,534,970 - 4,569,549 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	4,536,246 - 4,571,000 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRIMPOL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	184,649,738 - 184,694,952 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	184,649,667 - 184,694,963 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	185,570,892 - 185,616,106 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	185,807,896 - 185,853,106 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	182,899,431 - 182,944,944 (+)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	181,325,094 - 181,369,754 (+)	NCBI		HuRef
CHM1_1	4	185,547,294 - 185,592,636 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	187,993,422 - 188,038,703 (+)	NCBI		T2T-CHM13v2.0

Primpol
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	47,028,614 - 47,070,282 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	47,028,629 - 47,070,247 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	46,575,579 - 46,617,227 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	46,575,594 - 46,617,212 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	47,660,948 - 47,702,554 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	48,074,411 - 48,116,017 (-)	NCBI		MGSCv36	mm8
Celera	8	49,258,170 - 49,299,782 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	26.39	NCBI

Primpol
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	52,413,894 - 52,450,975 (+)	NCBI		GRCr8
mRatBN7.2	16	45,681,252 - 45,715,758 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	45,681,326 - 45,715,565 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	48,863,385 - 48,900,409 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	48,863,418 - 48,897,795 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	48,578,483 - 48,615,806 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	48,968,598 - 48,997,032 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	43,684,349 - 43,721,241 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

Primpol
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	24,279,122 - 24,303,682 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	24,278,727 - 24,307,312 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRIMPOL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	182,373,488 - 182,419,142 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	182,735,279 - 182,780,912 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	176,815,122 - 176,860,682 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	189,040,324 - 189,085,335 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

PRIMPOL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	45,861,244 - 45,920,183 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	45,856,042 - 45,918,761 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	46,354,134 - 46,412,999 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	48,076,787 - 48,135,773 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	48,070,581 - 48,135,753 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	46,042,091 - 46,100,919 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	46,656,725 - 46,715,297 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	46,789,466 - 46,848,402 (-)	NCBI		UU_Cfam_GSD_1.0

PRIMPOL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	45,709,710 - 45,819,919 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	45,764,261 - 45,851,052 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	52,463,747 - 52,518,946 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRIMPOL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	130,611,105 - 130,653,614 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	130,611,133 - 130,657,450 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	110,862,699 - 110,906,635 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Primpol
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	15,425,234 - 15,453,613 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	15,414,510 - 15,451,711 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021729062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005737966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000004914 ⟹ ENSSTOP00000004408

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936554	4,534,970 - 4,569,549 (-)	Ensembl

RefSeq Acc Id:

XM_005329223 ⟹ XP_005329280

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,075 - 33,573,466 (+)	NCBI
SpeTri2.0	NW_004936554	4,536,246 - 4,571,000 (-)	NCBI

Sequence:

show sequence

GCCCGACTCGGCCCCGCGGAGCTCGCACTTAGGTTGGCGACAAAGCTTACTTCAGCTCCGGCCC
GCCTGGCCCCAGCCCGCCGCAGGACCACGTCCCCGCTGGGCCCGGAGCGGAGCCCGCCTTTCTC
CGGCGGCAGCCCCGCCCCGCGCGCTGGGCCCGCCCCCGCGCGGAGATTGAAGTCTGCATCCCGC
CCTCGGCTGAAGACCCGCGGGCTTCCGCCCCCGACCCACTGGTTTCCGGAGAGGTGTCCTGGAG
GTAGCAGAATTTGATCTGGACCTTGAAGGAGAAGAATTCAGAAAAGCAACTGTGAGAGAAACAA
GAGCAAGAGAATTTCTGGAGTGGTCCAGGAGCAGAAAGTGATCATTATCATTCATTTGGTGAGA
AAGCTGAACGAGAATAATAATAGAAAACTTAAGTGGAACAGGATTTATTCTCCCCACACTTATA
AACCAATGAAGAGAAAATGGGAAGAAAAACTGAAGCGAATTGAAGAACTAGCATCTCAGTATGA
GAGGAAACCATTGTCCTCTGTTTATAGACCAAGATTGTCCAAGTCAGAAGAACCACCCTCCATT
TGGAAGCTGTTTTATCGACAAAATCAAGCTTTTAATTTTGTTAAAAGCTGTAAAGAGGATGTTC
ATGTATTTGCTTTGGAATGTAAAGTGGGAGATGGTCAACGCATTTACCTTGTAACAACCTATGC
TCAACTTTGGTTTTACTATAAATCTCGAAAAAGTCTCATGCACTGCTATGAAGTTATTCCTGAA
AATGCTGTATGCAAACTTTATTTTGATTTGGAATTTAACAAACCTGCCAATCCTGAAGCCGATG
GGAAAAAGATGGTTGCATTACTCATAGAGTATGTTTGTAAAGCACTTCAAGAATTATACAATGT
TAGTTGTTCATCTGAAGATGTTTTCAACTTGGATTCTAGCACTGATGAAAAATTTAGCCGTCAT
TTAATATTTCAACTCCATGATGTGGCATTTAAAGATAATGTTCACGTTGGTAATTTTGTCAGAA
AGATTCTGCAGCCTGCTTTTCACTTTATTGCCAGTGAAGATGATGATAGAATTCTAGAGATAAC
AGATTATCAATCTTCCCATTTTTCTGAAGCACCATTAAAACAAGGGAGTTCCTTGAACAAAATG
TTGACAGTTAAGGATATGGGAGAGAGCTGGGCGTTAAATTTGGAGGAACTGGAGAGACTGGGGT
CAGCTGACAAAAGTGGTCCTGATCTTTCATTTTTAATTGTAAAGAACAACATGGGAGAAAAGCA
TCTTTTTGTGGATCTAGGAGTTTATACAAGAAACAGAAACTTCCGACTGTATAAATCATCAAAA
ATAGGAAAGCATGTCGCTTTGGAGATTGCTGAAGATAACAAATTTTTTCCTAAACAGTCAAAAA
GTATTTCTGAAGAAAATCAATATTTCCTTTCTTCCTTGGTCAGCAATGTCAGATTTTCAGATAC
TTTACGAATTCTTACGTGTGACGCACCTCAGATTAAACGAAAGCAAGCTGAGTATTTGAATAGT
ACCATCACTTCAGTAGAAACCATTGAAGGTTTTCAGTGTTCACCCTATCCTGAAGTTGATCGTT
TTGTTCTTTCTTTGGTGAATAAAAATGACATTAAAGGAGGAATTCGGCGCTGGAGCTACTTTTT
CCCAGAAGAATTATTGGTTTATGATATTTCCAAATTCCGGTGGTGTGAAAACATTGGAAGAGCC
CACAAAAGTAATAATATCATGATTCTGGTTGATCTGAAAAATGAAGTTTGGTATCAAAAATGTC
ATGACCCTGTATGCAAAGCAGAAAACTTCAAATCTGACTATTTTCCATTACCTGCTGAAGTCAG
TCTTCTGTTTCTTCTCAAACAGGAAGAAGAGTTTACAGAAGATGAAACTGAGCACAGTGAAACC
AAGAATCCTCATGAGCTCCTGTCAACAGCAGGTGCATCTGCTGATGCTGACTGGGATAATGGCA
CTGATGATGCTTGCTTTTTAGAAGCTACTGAAGATGCTGAATTAGCTGAAGCTGTAGAGAATAG
TCTTCTTACTTCTCACAGTAGTATAGAGGATGAAATTCCTGATGAACTAATTATTGAGGTATTT
CAAGAGTAGCTCTCTGTGGATAGTGCTTATTATCCAGGCAAAAATTTGCCCAAAGTCTGAGATT
TGATAACAGATTTATTAAATTAGGCCTGGGAGTGCAGCTCAGTGGTAGAGTGCCTGCTTGTCTA
ATATGCAAAGGCCCCAAGTTCAATCTCCAGCTGCACAAAAATAATTATATTAACTTATTAAGTC
TGTTTATATCAATTGTGTTTTTATCACTTTATCTTCCAATTTGTTATTTACTAAAGTAAACCAG
TTTTATTGAAAATTGGCTTTGGTGTTTTTAAACTCATTCAGTAGACATCTCATTAACCAAAATT
GGTCTGTGTTCATAATGACATAATTTTAAAAGTTTATTTATAGATTAATACTCATGTCTGGGTT
TTAATATCTGGGGCTGATTAAAATAAGGTATCAGCATTTTATTATCAGGAAAGATGACTATGGC
TTCTAAGACAAACTTGTTTCATTTATTTTAGTGATTAAGTCATACTTTTAAAAAAATCTGAGAT
GTGTTATGTAGGTAATTTTTCATAGACTG

hide sequence

RefSeq Acc Id:

XM_021729061 ⟹ XP_021584736

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,075 - 33,573,466 (+)	NCBI
SpeTri2.0	NW_004936554	4,536,778 - 4,571,000 (-)	NCBI

Sequence:

show sequence

GCCCGACTCGGCCCCGCGGAGCTCGCACTTAGGTTGGCGACAAAGCTTACTTCAGCTCCGGCCC
GCCTGGCCCCAGCCCGCCGCAGGACCACGTCCCCGCTGGGCCCGGAGCGGAGCCCGCCTTTCTC
CGGCGGCAGCCCCGCCCCGCGCGCTGGGCCCGCCCCCGCGCGGAGATTGAAGTCTGCATCCCGC
CCTCGGCTGAAGACCCGCGGGCTTCCGCCCCCGACCCACTGGTTTCCGGAGAGGTGTCCTGGAG
GTAGCAGAATTTGATCTGGACCTTGAAGGAGAAGAATTCAGAAAAGCAACTGTGAGAGAAACAA
GAGCAAGAGAATTTCTGGAGTGGTCCAGGAGCAGAAAGTGATCATTATCATTCATTTGGTGAGA
AAGCTGAACGAGAATAATAATAGAAAACTTAAGTGGAACAGGATTTATTCTCCCCACACTTATA
AACCAATGAAGAGAAAATGGGAAGAAAAACTGAAGCGAATTGAAGAACTAGCATCTCAGTATGA
GAGGAAACCATTGTCCTCTGTTTATAGACCAAGATTGTCCAAGTCAGAAGAACCACCCTCCATT
TGGAAGCTGTTTTATCGACAAAATCAAGCTTTTAATTTTGTTAAAAGCTGTAAAGAGGATGTTC
ATGTATTTGCTTTGGAATGTAAAGTGGGAGATGGTCAACGCATTTACCTTGTAACAACCTATGC
TCAACTTTGGTTTTACTATAAATCTCGAAAAAGTCTCATGCACTGCTATGAAGTTATTCCTGAA
AATGCTGTATGCAAACTTTATTTTGATTTGGAATTTAACAAACCTGCCAATCCTGAAGCCGATG
GGAAAAAGATGGTTGCATTACTCATAGAGTATGTTTGTAAAGCACTTCAAGAATTATACAATGT
TAGTTGTTCATCTGAAGATGTTTTCAACTTGGATTCTAGCACTGATGAAAAATTTAGCCGTCAT
TTAATATTTCAACTCCATGATGTGGCATTTAAAGATAATGTTCACGTTGGTAATTTTGTCAGAA
AGATTCTGCAGCCTGCTTTTCACTTTATTGCCAGTGAAGATGATGATAGAATTCTAGAGATAAC
AGATTATCAATCTTCCCATTTTTCTGAAGCACCATTAAAACAAGGGAGTTCCTTGAACAAAATG
TTGACAGTTAAGGATATGGGAGAGAGCTGGGCGTTAAATTTGGAGGAACTGGAGAGACTGGGGT
CAGCTGACAAAAGTGGTCCTGATCTTTCATTTTTAATTGTAAAGAACAACATGGGAGAAAAGCA
TCTTTTTGTGGATCTAGGAGTTTATACAAGAAACAGAAACTTCCGACTGTATAAATCATCAAAA
ATAGGAAAGCATGTCGCTTTGGAGATTGCTGAAGATAACAAATTTTTTCCTAAACAGTCAAAAA
GTATTTCTGAAGAAAATCAATATTTCCTTTCTTCCTTGGTCAGCAATGTCAGATTTTCAGATAC
TTTACGAATTCTTACGTGTGACGCACCTCAGATTAAACGAAAGCAAGCTGAGTATTTGAATAGT
ACCATCACTTCAGAAACCATTGAAGGTTTTCAGTGTTCACCCTATCCTGAAGTTGATCGTTTTG
TTCTTTCTTTGGTGAATAAAAATGACATTAAAGGAGGAATTCGGCGCTGGAGCTACTTTTTCCC
AGAAGAATTATTGGTTTATGATATTTCCAAATTCCGGTGGTGTGAAAACATTGGAAGAGCCCAC
AAAAGTAATAATATCATGATTCTGGTTGATCTGAAAAATGAAGTTTGGTATCAAAAATGTCATG
ACCCTGTATGCAAAGCAGAAAACTTCAAATCTGACTATTTTCCATTACCTGCTGAAGTCAGTCT
TCTGTTTCTTCTCAAACAGGAAGAAGAGTTTACAGAAGATGAAACTGAGCACAGTGAAACCAAG
AATCCTCATGAGCTCCTGTCAACAGCAGGTGCATCTGCTGATGCTGACTGGGATAATGGCACTG
ATGATGCTTGCTTTTTAGAAGCTACTGAAGATGCTGAATTAGCTGAAGCTGTAGAGAATAGTCT
TCTTACTTCTCACAGTAGTATAGAGGATGAAATTCCTGATGAACTAATTATTGAGGTATTTCAA
GAGTAG

hide sequence

RefSeq Acc Id:

XM_021729062 ⟹ XP_021584737

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,075 - 33,573,466 (+)	NCBI
SpeTri2.0	NW_004936554	4,536,778 - 4,569,460 (-)	NCBI

Sequence:

show sequence

GAGAAGAATTCAGAAAAGCAACTGTGAGAGAAACAAGAGCAAGAGAATTTCTGGAGTGGTCCAG
GAGCAGAAAGTGATCATTATCATTCATTTGGTGAGAAAGCTGAACGAGAATAATAATAGACCAA
GATTGTCCAAGTCAGAAGAACCACCCTCCATTTGGAAGCTGTTTTATCGACAAAATCAAGCTTT
TAATTTTGTTAAAAGCTGTAAAGAGGATGTTCATGTATTTGCTTTGGAATGTAAAGTGGGAGAT
GGTCAACGCATTTACCTTGTAACAACCTATGCTCAACTTTGGTTTTACTATAAATCTCGAAAAA
GTCTCATGCACTGCTATGAAGTTATTCCTGAAAATGCTGTATGCAAACTTTATTTTGATTTGGA
ATTTAACAAACCTGCCAATCCTGAAGCCGATGGGAAAAAGATGGTTGCATTACTCATAGAGTAT
GTTTGTAAAGCACTTCAAGAATTATACAATGTTAGTTGTTCATCTGAAGATGTTTTCAACTTGG
ATTCTAGCACTGATGAAAAATTTAGCCGTCATTTAATATTTCAACTCCATGATGTGGCATTTAA
AGATAATGTTCACGTTGGTAATTTTGTCAGAAAGATTCTGCAGCCTGCTTTTCACTTTATTGCC
AGTGAAGATGATGATAGAATTCTAGAGATAACAGATTATCAATCTTCCCATTTTTCTGAAGCAC
CATTAAAACAAGGGAGTTCCTTGAACAAAATGTTGACAGTTAAGGATATGGGAGAGAGCTGGGC
GTTAAATTTGGAGGAACTGGAGAGACTGGGGTCAGCTGACAAAAGTGGTCCTGATCTTTCATTT
TTAATTGTAAAGAACAACATGGGAGAAAAGCATCTTTTTGTGGATCTAGGAGTTTATACAAGAA
ACAGAAACTTCCGACTGTATAAATCATCAAAAATAGGAAAGCATGTCGCTTTGGAGATTGCTGA
AGATAACAAATTTTTTCCTAAACAGTCAAAAAGTATTTCTGAAGAAAATCAATATTTCCTTTCT
TCCTTGGTCAGCAATGTCAGATTTTCAGATACTTTACGAATTCTTACGTGTGACGCACCTCAGA
TTAAACGAAAGCAAGCTGAGTATTTGAATAGTACCATCACTTCAGTAGAAACCATTGAAGGTTT
TCAGTGTTCACCCTATCCTGAAGTTGATCGTTTTGTTCTTTCTTTGGTGAATAAAAATGACATT
AAAGGAGGAATTCGGCGCTGGAGCTACTTTTTCCCAGAAGAATTATTGGTTTATGATATTTCCA
AATTCCGGTGGTGTGAAAACATTGGAAGAGCCCACAAAAGTAATAATATCATGATTCTGGTTGA
TCTGAAAAATGAAGTTTGGTATCAAAAATGTCATGACCCTGTATGCAAAGCAGAAAACTTCAAA
TCTGACTATTTTCCATTACCTGCTGAAGTCAGTCTTCTGTTTCTTCTCAAACAGGAAGAAGAGT
TTACAGAAGATGAAACTGAGCACAGTGAAACCAAGAATCCTCATGAGCTCCTGTCAACAGCAGG
TGCATCTGCTGATGCTGACTGGGATAATGGCACTGATGATGCTTGCTTTTTAGAAGCTACTGAA
GATGCTGAATTAGCTGAAGCTGTAGAGAATAGTCTTCTTACTTCTCACAGTAGTATAGAGGATG
AAATTCCTGATGAACTAATTATTGAGGTATTTCAAGAGTAG

hide sequence

RefSeq Acc Id:

XM_040294325 ⟹ XP_040150259

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,412,746 - 33,573,466 (+)	NCBI

RefSeq Acc Id:

XM_040294333 ⟹ XP_040150267

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,225 - 33,573,466 (+)	NCBI

RefSeq Acc Id:

XM_040294336 ⟹ XP_040150270

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,538,797 - 33,573,466 (+)	NCBI

RefSeq Acc Id:

XM_040294354 ⟹ XP_040150288

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,075 - 33,570,009 (+)	NCBI

RefSeq Acc Id:

XR_005737966

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404943	33,539,075 - 33,573,095 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005329280	(Get FASTA)	NCBI Sequence Viewer
	XP_021584736	(Get FASTA)	NCBI Sequence Viewer
	XP_021584737	(Get FASTA)	NCBI Sequence Viewer
	XP_040150259	(Get FASTA)	NCBI Sequence Viewer
	XP_040150267	(Get FASTA)	NCBI Sequence Viewer
	XP_040150270	(Get FASTA)	NCBI Sequence Viewer
	XP_040150288	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004408.3
GenBank Protein	KAG3294575	(Get FASTA)	NCBI Sequence Viewer
	KAG3294576	(Get FASTA)	NCBI Sequence Viewer
	KAG3294577	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005329280 ⟸ XM_005329223
- Peptide Label:	isoform X1
- UniProtKB:	I3M541 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKRKWEEKLKRIEELASQYERKPLSSVYRPRLSKSEEPPSIWKLFYRQNQAFNFVKSCKEDVHV FALECKVGDGQRIYLVTTYAQLWFYYKSRKSLMHCYEVIPENAVCKLYFDLEFNKPANPEADGK KMVALLIEYVCKALQELYNVSCSSEDVFNLDSSTDEKFSRHLIFQLHDVAFKDNVHVGNFVRKI LQPAFHFIASEDDDRILEITDYQSSHFSEAPLKQGSSLNKMLTVKDMGESWALNLEELERLGSA DKSGPDLSFLIVKNNMGEKHLFVDLGVYTRNRNFRLYKSSKIGKHVALEIAEDNKFFPKQSKSI SEENQYFLSSLVSNVRFSDTLRILTCDAPQIKRKQAEYLNSTITSVETIEGFQCSPYPEVDRFV LSLVNKNDIKGGIRRWSYFFPEELLVYDISKFRWCENIGRAHKSNNIMILVDLKNEVWYQKCHD PVCKAENFKSDYFPLPAEVSLLFLLKQEEEFTEDETEHSETKNPHELLSTAGASADADWDNGTD DACFLEATEDAELAEAVENSLLTSHSSIEDEIPDELIIEVFQE hide sequence

RefSeq Acc Id:

XP_021584736 ⟸ XM_021729061

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKRKWEEKLKRIEELASQYERKPLSSVYRPRLSKSEEPPSIWKLFYRQNQAFNFVKSCKEDVHV
FALECKVGDGQRIYLVTTYAQLWFYYKSRKSLMHCYEVIPENAVCKLYFDLEFNKPANPEADGK
KMVALLIEYVCKALQELYNVSCSSEDVFNLDSSTDEKFSRHLIFQLHDVAFKDNVHVGNFVRKI
LQPAFHFIASEDDDRILEITDYQSSHFSEAPLKQGSSLNKMLTVKDMGESWALNLEELERLGSA
DKSGPDLSFLIVKNNMGEKHLFVDLGVYTRNRNFRLYKSSKIGKHVALEIAEDNKFFPKQSKSI
SEENQYFLSSLVSNVRFSDTLRILTCDAPQIKRKQAEYLNSTITSETIEGFQCSPYPEVDRFVL
SLVNKNDIKGGIRRWSYFFPEELLVYDISKFRWCENIGRAHKSNNIMILVDLKNEVWYQKCHDP
VCKAENFKSDYFPLPAEVSLLFLLKQEEEFTEDETEHSETKNPHELLSTAGASADADWDNGTDD
ACFLEATEDAELAEAVENSLLTSHSSIEDEIPDELIIEVFQE

hide sequence

RefSeq Acc Id:

XP_021584737 ⟸ XM_021729062

- Peptide Label:

isoform X4

- Sequence:

show sequence

MHCYEVIPENAVCKLYFDLEFNKPANPEADGKKMVALLIEYVCKALQELYNVSCSSEDVFNLDS
STDEKFSRHLIFQLHDVAFKDNVHVGNFVRKILQPAFHFIASEDDDRILEITDYQSSHFSEAPL
KQGSSLNKMLTVKDMGESWALNLEELERLGSADKSGPDLSFLIVKNNMGEKHLFVDLGVYTRNR
NFRLYKSSKIGKHVALEIAEDNKFFPKQSKSISEENQYFLSSLVSNVRFSDTLRILTCDAPQIK
RKQAEYLNSTITSVETIEGFQCSPYPEVDRFVLSLVNKNDIKGGIRRWSYFFPEELLVYDISKF
RWCENIGRAHKSNNIMILVDLKNEVWYQKCHDPVCKAENFKSDYFPLPAEVSLLFLLKQEEEFT
EDETEHSETKNPHELLSTAGASADADWDNGTDDACFLEATEDAELAEAVENSLLTSHSSIEDEI
PDELIIEVFQE

hide sequence

RefSeq Acc Id:	XP_040150259 ⟸ XM_040294325
- Peptide Label:	isoform X1
- UniProtKB:	I3M541 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150270 ⟸ XM_040294336
- Peptide Label:	isoform X1
- UniProtKB:	I3M541 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040150288 ⟸ XM_040294354
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040150267 ⟸ XM_040294333
- Peptide Label:	isoform X1
- UniProtKB:	I3M541 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000004408 ⟸ ENSSTOT00000004914

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000004912	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000004914.3	UniProtKB/TrEMBL
InterPro	DNA_primase_S	UniProtKB/TrEMBL
	PRIMPOL	UniProtKB/TrEMBL
NCBI Gene	Primpol	ENTREZGENE
PANTHER	DNA-DIRECTED PRIMASE/POLYMERASE PROTEIN	UniProtKB/TrEMBL
	PTHR31399	UniProtKB/TrEMBL
Pfam	DNA_primase_S	UniProtKB/TrEMBL
	Herpes_UL52	UniProtKB/TrEMBL
UniProt	I3M541	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM