Symbol:
Ccdc13
Name:
coiled-coil domain containing 13
RGD ID:
12628000
Description:
INVOLVED IN cytoplasmic microtubule organization (inferred); DNA damage response (inferred); non-motile cilium assembly (inferred); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); FOUND IN centriolar satellite (inferred); centrosome (inferred)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
coiled-coil domain-containing protein 13
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 199,998,819 - 200,055,094 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936695 2,350,640 - 2,402,557 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936695 2,350,668 - 2,404,882 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Ccdc13 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405118 199,998,819 - 200,055,094 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936695 2,350,640 - 2,402,557 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936695 2,350,668 - 2,404,882 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CCDC13 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 3 42,704,118 - 42,773,253 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 3 42,705,756 - 42,773,253 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 3 42,747,248 - 42,814,745 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 3 42,724,878 - 42,789,749 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 3 42,724,885 - 42,789,748 NCBI Celera 3 42,690,269 - 42,755,122 (-) NCBI Celera Cytogenetic Map 3 p22.1 NCBI HuRef 3 42,795,514 - 42,860,384 (-) NCBI HuRef CHM1_1 3 42,701,048 - 42,765,907 (-) NCBI CHM1_1 T2T-CHM13v2.0 3 42,722,128 - 42,791,300 (-) NCBI T2T-CHM13v2.0
Ccdc13 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 9 121,626,690 - 121,668,581 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 9 121,626,693 - 121,668,527 (-) Ensembl GRCm39 Ensembl GRCm38 9 121,797,624 - 121,839,515 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 9 121,797,627 - 121,839,461 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 9 121,726,480 - 121,745,639 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 9 121,726,480 - 121,745,639 (-) NCBI MGSCv36 mm8 Celera 9 122,290,743 - 122,310,553 (-) NCBI Celera Cytogenetic Map 9 F4 NCBI cM Map 9 72.63 NCBI
Ccdc13 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 8 130,335,797 - 130,391,658 (-) NCBI GRCr8 mRatBN7.2 8 121,455,202 - 121,507,487 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 8 121,457,697 - 121,502,337 (-) Ensembl mRatBN7.2 Ensembl Rnor_6.0 8 130,436,529 - 130,475,521 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 8 130,437,157 - 130,475,320 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 8 129,615,611 - 129,653,317 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 8 127,098,740 - 127,139,377 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 Celera 8 120,592,355 - 120,623,289 (-) NCBI Celera Cytogenetic Map 8 q32 NCBI
Ccdc13 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955420 28,061,449 - 28,107,309 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955420 28,061,460 - 28,107,509 (+) NCBI ChiLan1.0 ChiLan1.0
CCDC13 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 2 42,669,492 - 42,737,174 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 3 42,662,044 - 42,741,936 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 3 42,615,424 - 42,680,102 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 3 43,679,176 - 43,743,253 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 3 43,679,176 - 43,743,463 (-) Ensembl panpan1.1 panPan2
CCDC13 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 23 11,835,075 - 11,886,892 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 23 11,820,749 - 11,873,713 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 23 11,809,264 - 11,861,401 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 23 12,124,443 - 12,176,597 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 23 12,107,392 - 12,163,232 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 23 11,926,382 - 11,978,871 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 23 12,068,522 - 12,121,181 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 23 12,072,658 - 12,124,832 (-) NCBI UU_Cfam_GSD_1.0
CCDC13 Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 13 26,220,622 - 26,265,700 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 13 26,220,622 - 26,265,699 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 13 28,888,378 - 28,933,894 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
CCDC13 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 22 4,164,828 - 4,228,692 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 22 4,165,416 - 4,228,483 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666041 162,971,825 - 163,037,800 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Ccdc13
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000009673 ⟹ ENSSTOP00000008678
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936695 2,350,640 - 2,402,557 (+) Ensembl
RefSeq Acc Id:
XM_021735025 ⟹ XP_021590700
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,819 - 200,055,094 (+) NCBI SpeTri2.0 NW_004936695 2,350,668 - 2,404,882 (+) NCBI
Sequence:
TGCTTTTGCTTTCAACCTTCCACCATCCTGTTTTACACTTTCAAAGATATTCTGAATGGCTACGTTAAATTTCATGGTGAAATCGTCCATTTTCCAACTTCCTTACAGGACAGCAAAATGTGCATCTC
hide sequence
RefSeq Acc Id:
XM_021735026 ⟹ XP_021590701
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,055,094 (+) NCBI SpeTri2.0 NW_004936695 2,350,668 - 2,404,882 (+) NCBI
Sequence:
TGCTTTTGCTTTCAACCTTCCACCATCCTGTTTTACACTTTCAAAGATATTCTGAATGGCTACGTTAAATTTCATGGTGAAATCGTCCATTTTCCAACTTCCTTACAGGACAGCAAAATGTGCATCTC
hide sequence
RefSeq Acc Id:
XM_040290112 ⟹ XP_040146046
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 200,004,482 - 200,055,094 (+) NCBI
RefSeq Acc Id:
XM_040290114 ⟹ XP_040146048
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,055,094 (+) NCBI
RefSeq Acc Id:
XM_040290115 ⟹ XP_040146049
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,055,094 (+) NCBI
RefSeq Acc Id:
XM_040290116 ⟹ XP_040146050
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,050,236 (+) NCBI
RefSeq Acc Id:
XM_040290117 ⟹ XP_040146051
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,055,094 (+) NCBI
RefSeq Acc Id:
XM_040290118 ⟹ XP_040146052
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,043,402 (+) NCBI
RefSeq Acc Id:
XM_040290119 ⟹ XP_040146053
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,049,486 (+) NCBI
RefSeq Acc Id:
XM_040290120 ⟹ XP_040146054
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024405118 199,998,957 - 200,055,094 (+) NCBI
RefSeq Acc Id:
XP_021590701 ⟸ XM_021735026
- Peptide Label:
isoform X1
- UniProtKB:
I3ME06 (UniProtKB/TrEMBL)
- Sequence:
MAADEGSQDTLRLQFKAMQELQHRRLQQQMEKKREKEKEQESRDDDQKESMEISDGLSLLHTEEQNLKNIFEQRVLEDEIQQLREELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRLAFTGSAGM
hide sequence
RefSeq Acc Id:
XP_021590700 ⟸ XM_021735025
- Peptide Label:
isoform X1
- UniProtKB:
I3ME06 (UniProtKB/TrEMBL)
- Sequence:
MAADEGSQDTLRLQFKAMQELQHRRLQQQMEKKREKEKEQESRDDDQKESMEISDGLSLLHTEEQNLKNIFEQRVLEDEIQQLREELRETVDENGRLYKLLKERDFEIKHLKKKIEEDRLAFTGSAGM
hide sequence
RefSeq Acc Id:
XP_040146054 ⟸ XM_040290120
- Peptide Label:
isoform X8
RefSeq Acc Id:
XP_040146051 ⟸ XM_040290117
- Peptide Label:
isoform X5
RefSeq Acc Id:
XP_040146049 ⟸ XM_040290115
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_040146048 ⟸ XM_040290114
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_040146050 ⟸ XM_040290116
- Peptide Label:
isoform X4
RefSeq Acc Id:
XP_040146053 ⟸ XM_040290119
- Peptide Label:
isoform X7
RefSeq Acc Id:
XP_040146052 ⟸ XM_040290118
- Peptide Label:
isoform X6
RefSeq Acc Id:
XP_040146046 ⟸ XM_040290112
- Peptide Label:
isoform X1
- UniProtKB:
I3ME06 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSSTOP00000008678 ⟸ ENSSTOT00000009673
