Tank (TRAF family member associated NFKB activator)

Gene: Tank (TRAF family member associated NFKB activator) Ictidomys tridecemlineatus

Analyze

Symbol:

Tank

Name:

TRAF family member associated NFKB activator

RGD ID:

12498262

Description:

ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (inferred); cellular response to interleukin-1 (inferred); cellular response to ionizing radiation (inferred); ASSOCIATED WITH autistic disorder (ortholog); Breast Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

TRAF family member associated NFKB activator, transcript variant X1; TRAF family member associated NFKB activator, transcript variant X2; TRAF family member associated NFKB activator, transcript variant X3; TRAF family member-associated NF-kappa-B activator

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	123,862,875 - 123,952,061 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	17,665,593 - 17,742,422 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	17,665,604 - 17,754,845 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Breast Neoplasms (ISO)

COVID-19 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

canonical NF-kappaB signal transduction (IEA)

cellular response to interleukin-1 (IEA)

cellular response to ionizing radiation (IEA)

cellular response to tumor necrosis factor (IEA)

DNA damage response (IEA)

negative regulation of canonical NF-kappaB signal transduction (IEA)

negative regulation of tumor necrosis factor-mediated signaling pathway (IEA)

positive regulation of protein deubiquitination (IEA)

positive regulation of type I interferon production (IEA)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (IEA)

protein-containing complex (IEA)

Molecular Function

cysteine-type deubiquitinase activity (IEA,ISO)

deubiquitinase activator activity (IEA)

metal ion binding (IEA)

molecular adaptor activity (IEA)

molecular function inhibitor activity (IEA)

protein binding (ISO)

ubiquitin protein ligase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Tank
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	123,862,875 - 123,952,061 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	17,665,593 - 17,742,422 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	17,665,604 - 17,754,845 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TANK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	161,136,963 - 161,236,230 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	161,136,908 - 161,236,230 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	161,993,474 - 162,092,741 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	161,701,712 - 161,800,928 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	161,818,972 - 161,886,997	NCBI
Celera	2	155,605,253 - 155,704,471 (+)	NCBI		Celera
Cytogenetic Map	2	q24.2	NCBI
HuRef	2	153,878,179 - 153,977,180 (+)	NCBI		HuRef
CHM1_1	2	161,999,604 - 162,098,821 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	161,595,211 - 161,694,538 (+)	NCBI		T2T-CHM13v2.0

Tank
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	61,408,901 - 61,484,515 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	61,408,929 - 61,484,515 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	61,578,557 - 61,654,171 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	61,578,585 - 61,654,171 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	61,416,643 - 61,492,228 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	61,379,425 - 61,454,950 (+)	NCBI		MGSCv36	mm8
Celera	2	63,280,293 - 63,355,826 (+)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	35.56	NCBI

Tank
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	66,522,834 - 66,598,864 (+)	NCBI		GRCr8
mRatBN7.2	3	46,114,230 - 46,190,270 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	46,114,274 - 46,190,264 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	49,452,587 - 49,528,949 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	58,036,094 - 58,112,454 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	55,824,243 - 55,901,927 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	47,439,007 - 47,515,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	47,439,076 - 47,515,700 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	54,111,767 - 54,188,472 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	43,396,247 - 43,475,491 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	43,329,797 - 43,371,197 (+)	NCBI
Celera	3	45,783,047 - 45,858,966 (+)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

Tank
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	12,470,085 - 12,561,370 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	12,470,203 - 12,561,364 (-)	NCBI	ChiLan1.0	ChiLan1.0

TANK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	63,847,693 - 63,923,533 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	63,839,226 - 63,938,505 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	48,426,036 - 48,525,265 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	165,797,247 - 165,896,438 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	165,820,833 - 165,896,438 (+)	Ensembl	panpan1.1		panPan2

TANK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	6,732,507 - 6,826,762 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	6,750,265 - 6,826,486 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	6,869,111 - 6,962,895 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	6,855,580 - 6,949,743 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	6,855,616 - 6,949,726 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	6,871,470 - 6,966,109 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	6,916,601 - 7,010,763 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	7,023,842 - 7,118,152 (+)	NCBI		UU_Cfam_GSD_1.0

TANK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	67,952,173 - 68,048,963 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	67,970,972 - 68,048,681 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	75,433,203 - 75,529,766 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TANK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	46,527,795 - 46,632,133 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	46,556,614 - 46,632,186 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	152,907,321 - 153,010,811 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tank
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	4,220,963 - 4,300,861 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	4,221,294 - 4,325,199 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005315757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021730066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040294384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000007745 ⟹ ENSSTOP00000006932

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	17,666,251 - 17,724,137 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000037045 ⟹ ENSSTOP00000029797

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936469	17,665,593 - 17,742,422 (-)	Ensembl

RefSeq Acc Id:

XM_005315757 ⟹ XP_005315814

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	123,875,325 - 123,952,061 (+)	NCBI
SpeTri2.0	NW_004936469	17,665,605 - 17,742,376 (-)	NCBI

Sequence:

show sequence

GTTAAAGGCTCCGCGCGCAGGCGCTGCCCTCTGAACTGGAACGGAAAACAACTTCCGGTTGCGG
TCACTAGATCAGGTACTGGCGACCTGTAGCGTGAGAGAGCGTGGCGGAAAACCCTGAACTACTT
GCCATTTATTCCATCCTTTATAGTGATGCCACAGGACAAGAGGGAATGGATAAAAACATTGGCG
AACAGCTCAATAAAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCTGCATTAAA
GGAACTGCAGCAAAAGACTGAGAACTATGAGCAGAGAATACGTGAGCAACAGGAACAGCTGTCA
CTTCAACAAACTATTATTGACAAGCTAAAATCACAGTTACTTCTGGTGAATTCCAGTCGAGATG
ACAGTTATGACTATGTTCCCCTGCTTGAAGATGGTGAAACAAGAAAGAATAATTTGACCTTTGA
TCAGCCACTTGATAAAGTGAAATCTGGAATACCAAGAGAAAAGCAGTCAAAGGTGAGAAGACAA
GAGGTTTCTCCTCCTAGAAAAGAAACTTCACCAAGGAGTCTTGGCATTCCTTCATTCCATGAAA
GGGGTAATATAGAGAAGACTTTCTGGGATCTCAAAGAAGAATTCCATAGAATTTGCATTCTAGC
AAAAGCACAAAAAGACCACTTAAGCAAACTTAACATACCAGACATTGCAACTGAAACACAGTGC
TCTGTGCCTATACAGTGTACGGATAAAACAGATAAACAAGAAGCGCTGTTTAAGCCTCAGGCTA
AAGATGATATAAATAGAGGTGCACCATGCATCACATCTGTCACACCAAGAGGACTGGGCCAGGA
TGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTTTCCACCTACGGACAGT
GACTCTACTTTTTTGCATAGCACTCCAGAGAGACCCAACATCTTTGGTCCTAGCACATCTGAGG
CAGTGTGCCAGGACAAATTTAATATGGAGCTCAGAAACAACACAGGAAACTTTCTTAAGACAGA
AGAAACTCTGTTCGAAATTCAGGGAATTGACCCCATAGCTTCAGCTATACAAAACCTTAAAACA
ACTGACATAACAAAACCCTCAAATCTTGTGAACACTTGTATCAGGACAACTCTGGATAGAGCTC
CATGCTTTCCTCCTGGAGACCAAAATGCGTTATATGTAAAAACATTCCCACTTCAGGACCCAAC
AGATGCACCTTTTTCCTCACTGGATTCCCCAGGAAAAGCTATCCGAGGACCACAGCAGCCCCTT
TGGAAGCCCTTTCCTAATCAAGACATTGACTTAGTGGTACTAAGTGGCTCAGACTCAGAACTGC
ATATACCCCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCATTACATCCAGGGGGGA
TTTCCTCCGGCATCTTAATTCACACTTTAATGGGGAGACTTAAGGCACACTTAAAAACAGATAT
GTCAAGTTGTGTGATGATTTGGGGTTATTAATACTACAAATACTTGATTGTAAATTAAATTCAG
AATCATTTATAGAAAAATCTAATATCACAGCTATTTGAATTTTTTTCTAAACTTATTTTGTAAC
TTTTATTATCTTTTAAAAGATCATCTTGTAAAAAAACCAATTCATTGTATTCATGTTTACAGTA
TTATTACCACAATTCAAAGTGATGTGGCTAACAGAGTTGTAAAATCATAATTTATGTTGTATCA
AATATCTAAGCTTATTGCTTGGATTTCTAGTGAGAGCTATTGAGTTTGAAAATGTAAATCTTAG
GGGATTTTGTTTTGTTTTCATTTAAAATATTACATTATTTATACTACAAGTAATTTCTTTTAAG
TAAATCTGTAAGAGGATAGCAGACAAAATAAAAATCTAATACTAAATCCAAGAAATTCGATGCC
CAGTGATAATTATTTAAACACTTTAGATTATTTCTAATAACATATGTGGTTTTTAATTTTTGCT
GTGTATACCTATATGATGAAATGAATTAAATATTAAAAGAGTTACTTATGTTATGATCATTAAA
GTGTTCTTTGTTCCTGAGGTAAATAAATAAATAAGTCATATTTGTGGGA

hide sequence

RefSeq Acc Id:

XM_021730025 ⟹ XP_021585700

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	123,875,325 - 123,952,061 (+)	NCBI
SpeTri2.0	NW_004936469	17,665,604 - 17,742,377 (-)	NCBI

Sequence:

show sequence

CGTTAAAGGCTCCGCGCGCAGGCGCTGCCCTCTGAACTGGAACGGAAAACAACTTCCGGTTGCG
GTCACTAGATCAGGTACTGGCGACCTGTAGCGTGAGAGAGCGTGGCGGAAAACCCTGAACTACT
TGCCATTTATTCCATCCTTTATAGTGATGCCACAGGACAAGAGGGAATGGATAAAAACATTGGC
GAACAGCTCAATAAAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCTGCATTAA
AGGAACTGCAGCAAAAGACTGAGAACTATGAGCAGAGAATACGTGAGCAACAGGAACAGCTGTC
ACTTCAACAAACTATTATTGACAAGCTAAAATCACAGTTACTTCTGGTGAATTCCAGTCGAGGT
TTTTATCTTGCAGATGACAGTTATGACTATGTTCCCCTGCTTGAAGATGGTGAAACAAGAAAGA
ATAATTTGACCTTTGATCAGCCACTTGATAAAGTGAAATCTGGAATACCAAGAGAAAAGCAGTC
AAAGGTGAGAAGACAAGAGGTTTCTCCTCCTAGAAAAGAAACTTCACCAAGGAGTCTTGGCATT
CCTTCATTCCATGAAAGGGGTAATATAGAGAAGACTTTCTGGGATCTCAAAGAAGAATTCCATA
GAATTTGCATTCTAGCAAAAGCACAAAAAGACCACTTAAGCAAACTTAACATACCAGACATTGC
AACTGAAACACAGTGCTCTGTGCCTATACAGTGTACGGATAAAACAGATAAACAAGAAGCGCTG
TTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTGCACCATGCATCACATCTGTCACACCAA
GAGGACTGGGCCAGGATGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTCAATGTCAAGTT
TCCACCTACGGACAGTGACTCTACTTTTTTGCATAGCACTCCAGAGAGACCCAACATCTTTGGT
CCTAGCACATCTGAGGCAGTGTGCCAGGACAAATTTAATATGGAGCTCAGAAACAACACAGGAA
ACTTTCTTAAGACAGAAGAAACTCTGTTCGAAATTCAGGGAATTGACCCCATAGCTTCAGCTAT
ACAAAACCTTAAAACAACTGACATAACAAAACCCTCAAATCTTGTGAACACTTGTATCAGGACA
ACTCTGGATAGAGCTCCATGCTTTCCTCCTGGAGACCAAAATGCGTTATATGTAAAAACATTCC
CACTTCAGGACCCAACAGATGCACCTTTTTCCTCACTGGATTCCCCAGGAAAAGCTATCCGAGG
ACCACAGCAGCCCCTTTGGAAGCCCTTTCCTAATCAAGACATTGACTTAGTGGTACTAAGTGGC
TCAGACTCAGAACTGCATATACCCCGAGTATGTGAATTCTGTCAAGCAGTTTTCCCACCATCCA
TTACATCCAGGGGGGATTTCCTCCGGCATCTTAATTCACACTTTAATGGGGAGACTTAAGGCAC
ACTTAAAAACAGATATGTCAAGTTGTGTGATGATTTGGGGTTATTAATACTACAAATACTTGAT
TGTAAATTAAATTCAGAATCATTTATAGAAAAATCTAATATCACAGCTATTTGAATTTTTTTCT
AAACTTATTTTGTAACTTTTATTATCTTTTAAAAGATCATCTTGTAAAAAAACCAATTCATTGT
ATTCATGTTTACAGTATTATTACCACAATTCAAAGTGATGTGGCTAACAGAGTTGTAAAATCAT
AATTTATGTTGTATCAAATATCTAAGCTTATTGCTTGGATTTCTAGTGAGAGCTATTGAGTTTG
AAAATGTAAATCTTAGGGGATTTTGTTTTGTTTTCATTTAAAATATTACATTATTTATACTACA
AGTAATTTCTTTTAAGTAAATCTGTAAGAGGATAGCAGACAAAATAAAAATCTAATACTAAATC
CAAGAAATTCGATGCCCAGTGATAATTATTTAAACACTTTAGATTATTTCTAATAACATATGTG
GTTTTTAATTTTTGCTGTGTATACCTATATGATGAAATGAATTAAATATTAAAAGAGTTACTTA
TGTTATGATCATTAAAGTGTTCTTTGTTCCTGAGGTAAATAAATAAATAAGTCATATTTGTGGG
AA

hide sequence

RefSeq Acc Id:

XM_021730066 ⟹ XP_021585741

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	123,862,875 - 123,952,061 (+)	NCBI
SpeTri2.0	NW_004936469	17,665,604 - 17,754,845 (-)	NCBI

Sequence:

show sequence

AGTTCAACAACGGGAGAGCTCAGGACAGTTTAAGTTGCGTTGGTAAATCCTGTGCAAACAGCTT
CCACAATGTGTAACTGCCTACATCTTTAAAGAGAAATACGCTGTGATGGAAGATTTGTAACCTG
GAGAAGAGACTTGCCATTTATTCCATCCTTTATAGTGATGCCACAGGACAAGAGGGAATGGATA
AAAACATTGGCGAACAGCTCAATAAAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGA
TTCTGCATTAAAGGAACTGCAGCAAAAGACTGAGAACTATGAGCAGAGAATACGTGAGCAACAG
GAACAGCTGTCACTTCAACAAACTATTATTGACAAGCTAAAATCACAGTTACTTCTGGTGAATT
CCAGTCGAGGTTTTTATCTTGCAGATGACAGTTATGACTATGTTCCCCTGCTTGAAGATGGTGA
AACAAGAAAGAATAATTTGACCTTTGATCAGCCACTTGATAAAGTGAAATCTGGAATACCAAGA
GAAAAGCAGTCAAAGGTGAGAAGACAAGAGGTTTCTCCTCCTAGAAAAGAAACTTCACCAAGGA
GTCTTGGCATTCCTTCATTCCATGAAAGGGGTAATATAGAGAAGACTTTCTGGGATCTCAAAGA
AGAATTCCATAGAATTTGCATTCTAGCAAAAGCACAAAAAGACCACTTAAGCAAACTTAACATA
CCAGACATTGCAACTGAAACACAGTGCTCTGTGCCTATACAGTGTACGGATAAAACAGATAAAC
AAGAAGCGCTGTTTAAGCCTCAGGCTAAAGATGATATAAATAGAGGTGCACCATGCATCACATC
TGTCACACCAAGAGGACTGGGCCAGGATGAGGAAGACACCTCTTTTGAATCACTTTCTAAATTC
AATGTCAAGTTTCCACCTACGGACAGTGACTCTACTTTTTTGCATAGCACTCCAGAGAGACCCA
ACATCTTTGGTCCTAGCACATCTGAGGCAGTGTGCCAGGACAAATTTAATATGGAGCTCAGAAA
CAACACAGGAAACTTTCTTAAGACAGAAGAAACTCTGTTCGAAATTCAGGGAATTGACCCCATA
GCTTCAGCTATACAAAACCTTAAAACAACTGACATAACAAAACCCTCAAATCTTGTGAACACTT
GTATCAGGACAACTCTGGATAGAGCTCCATGCTTTCCTCCTGGAGACCAAAATGCGTTATATGT
AAAAACATTCCCACTTCAGGACCCAACAGATGCACCTTTTTCCTCACTGGATTCCCCAGGAAAA
GCTATCCGAGGACCACAGCAGCCCCTTTGGAAGCCCTTTCCTAATCAAGACATTGACTTAGTGG
TACTAAGTGGCTCAGACTCAGAACTGCATATACCCCGAGTATGTGAATTCTGTCAAGCAGTTTT
CCCACCATCCATTACATCCAGGGGGGATTTCCTCCGGCATCTTAATTCACACTTTAATGGGGAG
ACTTAAGGCACACTTAAAAACAGATATGTCAAGTTGTGTGATGATTTGGGGTTATTAATACTAC
AAATACTTGATTGTAAATTAAATTCAGAATCATTTATAGAAAAATCTAATATCACAGCTATTTG
AATTTTTTTCTAAACTTATTTTGTAACTTTTATTATCTTTTAAAAGATCATCTTGTAAAAAAAC
CAATTCATTGTATTCATGTTTACAGTATTATTACCACAATTCAAAGTGATGTGGCTAACAGAGT
TGTAAAATCATAATTTATGTTGTATCAAATATCTAAGCTTATTGCTTGGATTTCTAGTGAGAGC
TATTGAGTTTGAAAATGTAAATCTTAGGGGATTTTGTTTTGTTTTCATTTAAAATATTACATTA
TTTATACTACAAGTAATTTCTTTTAAGTAAATCTGTAAGAGGATAGCAGACAAAATAAAAATCT
AATACTAAATCCAAGAAATTCGATGCCCAGTGATAATTATTTAAACACTTTAGATTATTTCTAA
TAACATATGTGGTTTTTAATTTTTGCTGTGTATACCTATATGATGAAATGAATTAAATATTAAA
AGAGTTACTTATGTTATGATCATTAAAGTGTTCTTTGTTCCTGAGGTAAATAAATAAATAAGTC
ATATTTGTGGGAA

hide sequence

RefSeq Acc Id:

XM_040294384 ⟹ XP_040150318

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	123,875,085 - 123,952,061 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005315814	(Get FASTA)	NCBI Sequence Viewer
	XP_021585700	(Get FASTA)	NCBI Sequence Viewer
	XP_021585741	(Get FASTA)	NCBI Sequence Viewer
	XP_040150318	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006932.3
	ENSSTOP00000029797.1
GenBank Protein	KAG3274566	(Get FASTA)	NCBI Sequence Viewer
	KAG3274567	(Get FASTA)	NCBI Sequence Viewer
	KAG3274568	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005315814 ⟸ XM_005315757
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D891 (UniProtKB/TrEMBL), I3MAC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDKNIGEQLNKAYEAFRQACMDRDSALKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL VNSSRDDSYDYVPLLEDGETRKNNLTFDQPLDKVKSGIPREKQSKVRRQEVSPPRKETSPRSLG IPSFHERGNIEKTFWDLKEEFHRICILAKAQKDHLSKLNIPDIATETQCSVPIQCTDKTDKQEA LFKPQAKDDINRGAPCITSVTPRGLGQDEEDTSFESLSKFNVKFPPTDSDSTFLHSTPERPNIF GPSTSEAVCQDKFNMELRNNTGNFLKTEETLFEIQGIDPIASAIQNLKTTDITKPSNLVNTCIR TTLDRAPCFPPGDQNALYVKTFPLQDPTDAPFSSLDSPGKAIRGPQQPLWKPFPNQDIDLVVLS GSDSELHIPRVCEFCQAVFPPSITSRGDFLRHLNSHFNGET hide sequence

RefSeq Acc Id:	XP_021585741 ⟸ XM_021730066
- Peptide Label:	isoform X1
- UniProtKB:	I3MAC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDKNIGEQLNKAYEAFRQACMDRDSALKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL VNSSRGFYLADDSYDYVPLLEDGETRKNNLTFDQPLDKVKSGIPREKQSKVRRQEVSPPRKETS PRSLGIPSFHERGNIEKTFWDLKEEFHRICILAKAQKDHLSKLNIPDIATETQCSVPIQCTDKT DKQEALFKPQAKDDINRGAPCITSVTPRGLGQDEEDTSFESLSKFNVKFPPTDSDSTFLHSTPE RPNIFGPSTSEAVCQDKFNMELRNNTGNFLKTEETLFEIQGIDPIASAIQNLKTTDITKPSNLV NTCIRTTLDRAPCFPPGDQNALYVKTFPLQDPTDAPFSSLDSPGKAIRGPQQPLWKPFPNQDID LVVLSGSDSELHIPRVCEFCQAVFPPSITSRGDFLRHLNSHFNGET hide sequence

RefSeq Acc Id:	XP_021585700 ⟸ XM_021730025
- Peptide Label:	isoform X1
- UniProtKB:	I3MAC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDKNIGEQLNKAYEAFRQACMDRDSALKELQQKTENYEQRIREQQEQLSLQQTIIDKLKSQLLL VNSSRGFYLADDSYDYVPLLEDGETRKNNLTFDQPLDKVKSGIPREKQSKVRRQEVSPPRKETS PRSLGIPSFHERGNIEKTFWDLKEEFHRICILAKAQKDHLSKLNIPDIATETQCSVPIQCTDKT DKQEALFKPQAKDDINRGAPCITSVTPRGLGQDEEDTSFESLSKFNVKFPPTDSDSTFLHSTPE RPNIFGPSTSEAVCQDKFNMELRNNTGNFLKTEETLFEIQGIDPIASAIQNLKTTDITKPSNLV NTCIRTTLDRAPCFPPGDQNALYVKTFPLQDPTDAPFSSLDSPGKAIRGPQQPLWKPFPNQDID LVVLSGSDSELHIPRVCEFCQAVFPPSITSRGDFLRHLNSHFNGET hide sequence

RefSeq Acc Id:	XP_040150318 ⟸ XM_040294384
- Peptide Label:	isoform X1
- UniProtKB:	I3MAC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000029797 ⟸ ENSSTOT00000037045

RefSeq Acc Id:

ENSSTOP00000006932 ⟸ ENSSTOT00000007745

Protein Domains

UBZ1-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007754	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007745.3	UniProtKB/TrEMBL
	ENSSTOT00000037045.1	UniProtKB/TrEMBL
InterPro	CALCOCO1/2_Zn_UBZ1	UniProtKB/TrEMBL
	TANK	UniProtKB/TrEMBL
	TBD	UniProtKB/TrEMBL
NCBI Gene	Tank	ENTREZGENE
PANTHER	PTHR15249	UniProtKB/TrEMBL
	TRAF FAMILY MEMBER-ASSOCIATED NF-KAPPA-B ACTIVATOR	UniProtKB/TrEMBL
Pfam	TBD	UniProtKB/TrEMBL
PROSITE	ZF_UBZ1	UniProtKB/TrEMBL
UniProt	A0A287D891	ENTREZGENE, UniProtKB/TrEMBL
	I3MAC0	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD