Traip (TRAF interacting protein) - Rat Genome Database

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Gene: Traip (TRAF interacting protein) Ictidomys tridecemlineatus
Analyze
Symbol: Traip
Name: TRAF interacting protein
RGD ID: 12579796
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of interferon-beta production (ortholog); negative regulation of tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); developmental and epileptic encephalopathy (ortholog); Dwarfism (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ubiquitin-protein ligase TRAIP; LOC101956664
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,674,131 - 64,705,756 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365291,434,629 - 1,466,382 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Traip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,674,131 - 64,705,756 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365291,434,629 - 1,466,382 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,828,601 - 49,856,564 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,828,601 - 49,856,574 (-)EnsemblGRCh38hg38GRCh38
GRCh37349,866,034 - 49,893,997 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,841,032 - 49,868,996 (-)NCBINCBI36Build 36hg18NCBI36
Celera349,831,372 - 49,859,800 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,924,552 - 49,952,533 (-)NCBIHuRef
CHM1_1349,818,089 - 49,846,065 (-)NCBICHM1_1
T2T-CHM13v2.0349,858,496 - 49,886,461 (-)NCBIT2T-CHM13v2.0
Traip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,828,158 - 107,849,469 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,827,335 - 107,849,469 (+)EnsemblGRCm39 Ensembl
GRCm389107,950,325 - 107,972,270 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,950,136 - 107,972,270 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,853,294 - 107,874,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,809,064 - 107,830,369 (+)NCBIMGSCv36mm8
Celera9107,559,385 - 107,580,687 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Traip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,520,476 - 117,540,253 (+)NCBIGRCr8
mRatBN7.28108,641,860 - 108,661,640 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,641,852 - 108,661,638 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8114,268,299 - 114,288,111 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,467,623 - 112,487,434 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,310,262 - 110,330,074 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,730,170 - 116,750,528 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,730,641 - 116,750,709 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,085,076 - 116,104,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,220,855 - 113,240,631 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,240,295 - 113,260,085 (+)NCBI
Celera8107,946,305 - 107,966,080 (+)NCBICelera
Cytogenetic Map8q32NCBI
Traip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,726,061 - 1,746,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,725,608 - 1,746,690 (-)NCBIChiLan1.0ChiLan1.0
TRAIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,813,521 - 49,844,114 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,818,276 - 49,848,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,760,528 - 49,789,637 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,996,647 - 51,025,243 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,996,647 - 51,025,241 (-)Ensemblpanpan1.1panPan2
TRAIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,430,109 - 39,454,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,430,489 - 39,453,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,351,169 - 39,375,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,787,196 - 39,811,318 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,787,356 - 39,811,310 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,154,232 - 39,178,342 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,558,472 - 39,582,589 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,838,028 - 39,862,140 (+)NCBIUU_Cfam_GSD_1.0
TRAIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,345,599 - 32,379,766 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,332,336 - 32,380,988 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,523,737 - 35,561,789 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRAIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,220,152 - 11,262,942 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,233,996 - 11,262,830 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,734,150 - 155,764,250 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Traip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,748,894 - 3,774,489 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247303,749,183 - 3,775,062 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005327058   ⟹   XP_005327115
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,674,131 - 64,705,756 (-)NCBI
SpeTri2.0NW_0049365291,434,629 - 1,466,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040269730   ⟹   XP_040125664
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560264,674,131 - 64,705,756 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005327115 (Get FASTA)   NCBI Sequence Viewer  
  XP_040125664 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012340.2
  ENSSTOP00000025839.1
GenBank Protein KAG3270498 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005327115   ⟸   XM_005327058
- Peptide Label: isoform X1
- UniProtKB: I3MLN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040125664   ⟸   XM_040269730
- Peptide Label: isoform X2
Protein Domains
RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013769 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013769.3 UniProtKB/TrEMBL
  ENSSTOT00000038411.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Traip ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RFWD3-RELATED UniProtKB/TrEMBL
  E3 UBIQUITIN-PROTEIN LIGASE TRAIP UniProtKB/TrEMBL
Pfam zf-RING_2 UniProtKB/TrEMBL
PROSITE ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
UniProt A0A287CX55_ICTTR UniProtKB/TrEMBL
  I3MLN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-09 Traip  TRAF interacting protein  LOC101956664  TRAF interacting protein  Symbol and/or name change 5135510 APPROVED
2021-03-26 LOC101956664  TRAF interacting protein  Traip  TRAF interacting protein  Symbol and/or name change 5135510 APPROVED