Fmn2 (formin 2) - Rat Genome Database

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Gene: Fmn2 (formin 2) Ictidomys tridecemlineatus
Analyze
Symbol: Fmn2
Name: formin 2
RGD ID: 12537585
Description: ENCODES a protein that exhibits actin binding (inferred); actin filament binding (inferred); INVOLVED IN actin filament bundle assembly (ortholog); meiotic chromosome movement towards spindle pole (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 47 (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (inferred); cell cortex (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: formin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,577,814 - 44,914,520 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365269,833,128 - 10,169,267 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365269,832,790 - 10,169,488 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fmn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934444,577,814 - 44,914,520 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365269,833,128 - 10,169,267 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365269,832,790 - 10,169,488 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FMN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381240,091,883 - 240,475,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1240,014,348 - 240,475,187 (+)EnsemblGRCh38hg38GRCh38
GRCh371240,255,183 - 240,638,487 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361238,321,604 - 238,705,112 (+)NCBINCBI36Build 36hg18NCBI36
Celera1213,510,402 - 213,893,529 (+)NCBICelera
Cytogenetic Map1q43NCBI
HuRef1210,713,436 - 211,096,763 (+)NCBIHuRef
CHM1_11241,528,744 - 241,910,469 (+)NCBICHM1_1
T2T-CHM13v2.01239,505,207 - 239,886,446 (+)NCBIT2T-CHM13v2.0
Fmn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,324,079 - 174,650,295 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1174,329,391 - 174,650,295 (+)EnsemblGRCm39 Ensembl
GRCm381174,501,752 - 174,822,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,501,825 - 174,822,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv371176,431,956 - 176,752,860 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,325,847 - 176,658,752 (+)NCBIMGSCv36mm8
Celera1181,581,367 - 181,911,120 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map181.04NCBI
Fmn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,986,863 - 89,303,789 (+)NCBIGRCr8
mRatBN7.21386,454,256 - 86,771,437 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1386,453,926 - 86,771,411 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01392,569,256 - 92,887,302 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1392,569,785 - 92,672,821 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01397,035,682 - 97,352,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41390,205,332 - 90,520,323 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1386,056,421 - 86,372,278 (+)NCBICelera
Cytogenetic Map13q24NCBI
Fmn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540611,358,585 - 11,666,102 (-)NCBIChiLan1.0ChiLan1.0
FMN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218,686,548 - 9,078,536 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan118,909,570 - 9,303,709 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01215,626,889 - 216,023,590 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11220,621,414 - 221,008,892 (+)NCBIpanpan1.1PanPan1.1panPan2
FMN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,657,371 - 32,024,777 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,697,245 - 32,023,472 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha731,194,870 - 31,564,912 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,478,304 - 31,849,271 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1731,315,799 - 31,687,109 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0731,348,230 - 31,718,511 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,586,597 - 31,957,372 (+)NCBIUU_Cfam_GSD_1.0
FMN2
(Sus scrofa - pig)		 No map positions available.
FMN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12577,187,572 - 77,585,773 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605579,293,686 - 79,693,875 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fmn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477110,642,515 - 10,953,480 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477110,641,845 - 10,956,213 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000028642   ⟹   ENSSTOP00000016978
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365269,833,128 - 10,169,267 (-)Ensembl
RefSeq Acc Id: XM_040278424   ⟹   XP_040134358
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934444,577,814 - 44,914,520 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040134358 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016978.2
GenBank Protein KAG3257901 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040134358   ⟸   XM_040278424
- UniProtKB: I3MXY3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000016978   ⟸   ENSSTOT00000028642
Protein Domains
FH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025339 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028642.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2220 UniProtKB/TrEMBL
InterPro FH2_Formin UniProtKB/TrEMBL
  FH2_Formin_sf UniProtKB/TrEMBL
NCBI Gene Fmn2 ENTREZGENE
PANTHER FORMIN UniProtKB/TrEMBL
  FORMIN-2 UniProtKB/TrEMBL
Pfam FH2 UniProtKB/TrEMBL
PROSITE FH2 UniProtKB/TrEMBL
SMART FH2 UniProtKB/TrEMBL
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/TrEMBL
UniProt I3MXY3 ENTREZGENE, UniProtKB/TrEMBL