Recql (RecQ like helicase) - Rat Genome Database

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Gene: Recql (RecQ like helicase) Ictidomys tridecemlineatus
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Symbol: Recql
Name: RecQ like helicase
RGD ID: 12442274
Description: ENCODES a protein that exhibits 3'-5' DNA helicase activity (inferred); ATP binding (inferred); ATP hydrolysis activity (inferred); INVOLVED IN DNA geometric change (inferred); DNA recombination (inferred); DNA replication (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN chromosome (inferred); cytoplasm (inferred); mediator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent DNA helicase Q1; RecQ protein-like (DNA helicase Q1-like)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,426,992 - 87,463,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,362,517 - 5,384,338 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,349,878 - 5,384,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Recql
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494587,426,992 - 87,463,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365485,362,517 - 5,384,338 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365485,349,878 - 5,384,603 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RECQL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381221,468,910 - 21,501,635 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1221,468,910 - 21,501,669 (-)EnsemblGRCh38hg38GRCh38
GRCh371221,621,844 - 21,654,569 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,513,965 - 21,545,796 (-)NCBINCBI36Build 36hg18NCBI36
Build 341221,514,353 - 21,545,796NCBI
Celera1226,777,229 - 26,809,985 (-)NCBICelera
Cytogenetic Map12p12.1NCBI
HuRef1221,395,874 - 21,428,641 (-)NCBIHuRef
CHM1_11221,587,472 - 21,620,203 (-)NCBICHM1_1
T2T-CHM13v2.01221,347,594 - 21,380,648 (-)NCBIT2T-CHM13v2.0
Recql
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,296,068 - 142,332,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6142,296,068 - 142,332,813 (-)EnsemblGRCm39 Ensembl
GRCm386142,350,342 - 142,387,100 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,350,342 - 142,387,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv376142,310,420 - 142,335,607 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366142,319,368 - 142,344,253 (-)NCBIMGSCv36mm8
Celera6145,421,861 - 145,447,035 (-)NCBICelera
Cytogenetic Map6G2NCBI
cM Map673.91NCBI
Recql
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84177,039,351 - 177,063,968 (-)NCBIGRCr8
mRatBN7.24175,308,337 - 175,332,965 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4175,304,117 - 175,332,945 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4181,603,185 - 181,627,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04177,387,454 - 177,411,941 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04176,008,012 - 176,032,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04176,581,892 - 176,606,520 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,581,897 - 176,606,382 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04240,795,675 - 240,820,290 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44179,927,255 - 179,951,742 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14180,172,380 - 180,196,866 (-)NCBI
Celera4163,841,046 - 163,865,533 (-)NCBICelera
Cytogenetic Map4q44NCBI
Recql
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,113,408 - 17,148,708 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541317,115,443 - 17,148,708 (-)NCBIChiLan1.0ChiLan1.0
RECQL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21075,300,616 - 75,333,274 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11275,297,014 - 75,329,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01264,796,383 - 64,829,165 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11267,400,315 - 67,432,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1267,400,315 - 67,432,724 (+)Ensemblpanpan1.1panPan2
RECQL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12725,590,326 - 25,636,304 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2725,590,831 - 25,636,685 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2720,715,583 - 20,761,524 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02725,818,962 - 25,865,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2725,819,030 - 25,865,148 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12725,611,850 - 25,658,034 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02725,634,863 - 25,681,036 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02720,891,461 - 20,937,671 (-)NCBIUU_Cfam_GSD_1.0
RECQL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,953,451 - 52,003,740 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1551,953,460 - 51,995,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2555,229,615 - 55,272,155 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RECQL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11121,334,601 - 21,366,943 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1121,331,584 - 21,366,979 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606913,777,790 - 13,810,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Recql
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475217,185,129 - 17,220,707 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475217,183,624 - 17,220,954 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013360162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000006327   ⟹   ENSSTOP00000005659
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365485,362,517 - 5,384,338 (+)Ensembl
RefSeq Acc Id: XM_013360162   ⟹   XP_013215616
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494587,426,992 - 87,463,355 (+)NCBI
SpeTri2.0NW_0049365485,349,878 - 5,384,603 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013215616 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005659.3
RefSeq Acc Id: XP_013215616   ⟸   XM_013360162
- Sequence:
RefSeq Acc Id: ENSSTOP00000005659   ⟸   ENSSTOT00000006327

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006328 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006327.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  DNA_helicase_ATP-dep_RecQ UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RecQ_Zn-bd UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Recql ENTREZGENE
PANTHER ATP-DEPENDENT DNA HELICASE Q1 UniProtKB/TrEMBL
  DNA HELICASE RECQ FAMILY MEMBER UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  RecQ_Zn_bind UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3M7Q1_ICTTR UniProtKB/TrEMBL