Ung (uracil DNA glycosylase) - Rat Genome Database

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Gene: Ung (uracil DNA glycosylase) Ictidomys tridecemlineatus
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Symbol: Ung
Name: uracil DNA glycosylase
RGD ID: 12664996
Description: ENCODES a protein that exhibits damaged DNA binding (ortholog); ribosomal small subunit binding (ortholog); uracil DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); base-excision repair, AP site formation via deaminated base removal (ortholog); isotype switching (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); Colorectal Neoplasms (ortholog); dysgammaglobulinemia (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: uracil-DNA glycosylase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,553,145 - 144,565,155 (-)NCBI
SpeTri2.0NW_004936769911,296 - 922,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Ung
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118144,553,145 - 144,565,155 (-)NCBI
SpeTri2.0NW_004936769911,296 - 922,770 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12109,097,597 - 109,110,992 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl12109,097,574 - 109,110,992 (+)EnsemblGRCh38hg38GRCh38
GRCh3812109,097,597 - 109,110,992 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712109,535,402 - 109,548,797 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612108,019,798 - 108,033,181 (+)NCBINCBI36hg18NCBI36
Build 3412107,998,134 - 108,011,518NCBI
Celera12109,159,338 - 109,172,962 (+)NCBI
Cytogenetic Map12q24.11NCBI
HuRef12106,553,817 - 106,567,575 (+)NCBIHuRef
CHM1_112109,503,049 - 109,516,448 (+)NCBICHM1_1
Ung
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395114,268,427 - 114,277,382 (+)NCBIGRCm39mm39
GRCm39 Ensembl5114,268,447 - 114,277,384 (+)Ensembl
GRCm385114,130,366 - 114,139,321 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5114,130,386 - 114,139,323 (+)EnsemblGRCm38mm10GRCm38
MGSCv375114,580,444 - 114,589,330 (+)NCBIGRCm37mm9NCBIm37
MGSCv365114,392,199 - 114,418,049 (+)NCBImm8
Celera5111,232,303 - 111,241,182 (+)NCBICelera
Cytogenetic Map5FNCBI
Ung
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21242,485,276 - 42,494,217 (-)NCBI
Rnor_6.0 Ensembl1248,246,569 - 48,254,822 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01248,246,593 - 48,255,547 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01250,028,792 - 50,037,127 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41243,520,629 - 43,528,873 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11243,384,016 - 43,392,261 (-)NCBI
Celera1244,089,808 - 44,098,015 (-)NCBICelera
Cytogenetic Map12q16NCBI
Ung
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545510,266,989 - 10,282,196 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545510,266,989 - 10,282,196 (+)NCBIChiLan1.0ChiLan1.0
UNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112110,067,882 - 110,080,891 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12110,067,879 - 110,080,891 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012106,674,073 - 106,687,054 (+)NCBIMhudiblu_PPA_v0panPan3
UNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12617,900,354 - 17,911,126 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2617,901,357 - 17,911,288 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2617,889,919 - 17,901,192 (+)NCBI
ROS_Cfam_1.02618,244,407 - 18,255,900 (-)NCBI
UMICH_Zoey_3.12618,099,207 - 18,110,426 (+)NCBI
UNSW_CanFamBas_1.02618,235,026 - 18,246,514 (-)NCBI
UU_Cfam_GSD_1.02618,253,824 - 18,265,113 (-)NCBI
UNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1441,746,501 - 41,757,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11441,746,498 - 41,757,841 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21444,311,840 - 44,323,500 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UNG
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111104,302,507 - 104,325,160 (+)NCBI
Ung
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474712,261,546 - 12,275,229 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005340106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005340106   ⟹   XP_005340163
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118144,553,145 - 144,565,155 (-)NCBI
SpeTri2.0NW_004936769911,296 - 922,770 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005340163 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005340163   ⟸   XM_005340106
- Sequence:
Protein Domains
UDG


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006894 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006161 UniProtKB/TrEMBL
  ENSSTOP00000028628 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006891 UniProtKB/TrEMBL
  ENSSTOT00000031653 UniProtKB/TrEMBL
Gene3D-CATH 3.40.470.10 UniProtKB/TrEMBL
InterPro UDG_fam1 UniProtKB/TrEMBL
  Ura-DNA_Glyclase_AS UniProtKB/TrEMBL
  Uracil-DNA_glycosylase-like UniProtKB/TrEMBL
  Uracil-DNA_glycosylase-like_sf UniProtKB/TrEMBL
NCBI Gene Ung ENTREZGENE
PANTHER PTHR11264 UniProtKB/TrEMBL
Pfam UDG UniProtKB/TrEMBL
PROSITE U_DNA_GLYCOSYLASE UniProtKB/TrEMBL
SMART UDG UniProtKB/TrEMBL
Superfamily-SCOP SSF52141 UniProtKB/TrEMBL
TIGRFAMs ung UniProtKB/TrEMBL
UniProt A0A287D4Z8_ICTTR UniProtKB/TrEMBL
  I3M8Q6_ICTTR UniProtKB/TrEMBL