Ccnk (cyclin K) - Rat Genome Database

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Gene: Ccnk (cyclin K) Ictidomys tridecemlineatus
Analyze
Symbol: Ccnk
Name: cyclin K
RGD ID: 12554688
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase activity (inferred); cyclin-dependent protein serine/threonine kinase regulator activity (inferred); protein kinase binding (inferred); INVOLVED IN cellular response to DNA damage stimulus (ortholog); in utero embryonic development (ortholog); negative regulation of stem cell differentiation (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH HYPERTELORISM AND DISTINCTIVE FACIES (ortholog); FOUND IN cyclin K-CDK12 complex (ortholog); cyclin K-CDK13 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cyclin-K
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,765,952 - 6,798,802 (-)NCBI
SpeTri2.0NW_0049366043,283,996 - 3,316,516 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ccnk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086406,765,952 - 6,798,802 (-)NCBI
SpeTri2.0NW_0049366043,283,996 - 3,316,516 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1499,481,169 - 99,535,044 (+)EnsemblGRCh38hg38GRCh38
GRCh381499,481,409 - 99,512,440 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371499,947,746 - 99,978,777 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361499,017,492 - 99,047,605 (+)NCBINCBI36hg18NCBI36
Build 341499,017,491 - 99,047,604NCBI
Celera1480,002,624 - 80,032,734 (+)NCBI
Cytogenetic Map14q32.2NCBI
HuRef1480,131,153 - 80,161,252 (+)NCBIHuRef
CHM1_11499,885,503 - 99,915,610 (+)NCBICHM1_1
Ccnk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912108,145,598 - 108,170,250 (+)NCBIGRCm39mm39
GRCm39 Ensembl12108,145,838 - 108,169,618 (+)Ensembl
GRCm3812108,179,308 - 108,203,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12108,179,579 - 108,203,359 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712109,417,948 - 109,441,569 (+)NCBIGRCm37mm9NCBIm37
MGSCv3612108,627,650 - 108,651,164 (+)NCBImm8
Celera12109,416,780 - 109,443,587 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1259.23NCBI
Ccnk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26127,090,115 - 127,113,195 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6127,090,569 - 127,113,191 (+)Ensembl
Rnor_6.06132,090,235 - 132,113,560 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6132,090,218 - 132,113,557 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06141,260,560 - 141,283,940 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46132,547,058 - 132,569,679 (+)NCBIRGSC3.4rn4RGSC3.4
Celera6124,649,851 - 124,672,436 (+)NCBICelera
Cytogenetic Map6q32NCBI
Ccnk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543820,835,825 - 20,849,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543820,826,818 - 20,850,496 (+)NCBIChiLan1.0ChiLan1.0
CCNK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11499,427,200 - 99,457,678 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1499,438,814 - 99,480,842 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01480,105,372 - 80,136,511 (+)NCBIMhudiblu_PPA_v0panPan3
CCNK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1867,910,772 - 67,927,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl867,901,426 - 67,945,214 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha867,424,492 - 67,450,284 (+)NCBI
ROS_Cfam_1.0868,188,098 - 68,213,958 (+)NCBI
ROS_Cfam_1.0 Ensembl868,188,164 - 68,231,870 (+)Ensembl
UMICH_Zoey_3.1867,849,135 - 67,874,925 (+)NCBI
UNSW_CanFamBas_1.0867,915,647 - 67,941,422 (+)NCBI
UU_Cfam_GSD_1.0868,312,735 - 68,338,539 (+)NCBI
CCNK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7120,487,206 - 120,514,014 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17120,487,140 - 120,514,223 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27128,108,566 - 128,124,064 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12477,436,569 - 77,466,703 (+)NCBIChlSab1.1chlSab2
ChlSab1.12477,436,569 - 77,466,703 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2477,436,479 - 77,467,322 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605364,572,606 - 64,605,678 (+)NCBIVero_WHO_p1.0
Ccnk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247344,366,884 - 4,392,934 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005333903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005333903   ⟹   XP_005333960
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244086406,765,952 - 6,798,802 (-)NCBI
SpeTri2.0NW_0049366043,283,996 - 3,316,516 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333960 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3260394 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005333960   ⟸   XM_005333903
- UniProtKB: A0A287D559 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
CYCLIN   Cyclin_C


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028286 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019372 UniProtKB/TrEMBL
  ENSSTOP00000028662 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021345 UniProtKB/TrEMBL
  ENSSTOT00000034454 UniProtKB/TrEMBL
InterPro Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin/Ssn8 UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene Ccnk ENTREZGENE
PANTHER PTHR10026 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A287D559 ENTREZGENE, UniProtKB/TrEMBL
  I3N4S6_ICTTR UniProtKB/TrEMBL