| 1564440 | Sohlh1 | spermatogenesis and oogenesis specific basic helix-loop-helix 1 | | 3 | 8662995 | 8667521 | Rat | n/a | Region | gene |
| 621106 | Kcnt1 | potassium sodium-activated channel subfamily T member 1 | | 3 | 8682964 | 8736615 | Rat | n/a | Region | gene |
| 1565022 | Camsap1 | calmodulin regulated spectrin-associated protein 1 | | 3 | 8746176 | 8806067 | Rat | n/a | Region | gene |
| 2322732 | Rpl8-ps7 | ribosomal protein L8, pseudogene 7 | | 3 | 8761803 | 8762691 | Rat | n/a | Region | gene |
| 7620876 | Pih1d1-ps1 | PIH1 domain containing 1, pseudogene 1 | | 3 | 8814063 | 8816906 | Rat | n/a | Region | gene |
| 1359542 | Ubac1 | UBA domain containing 1 | | 3 | 8825444 | 8848055 | Rat | n/a | Region | gene |
| 41264379 | LOC120101509 | uncharacterized LOC120101509 | | 3 | 8857931 | 8865742 | Rat | n/a | Region | gene |
| 1309292 | Nacc2 | NACC family member 2 | | 3 | 8879952 | 8946660 | Rat | n/a | Region | gene |
| 9300418 | LOC103691752 | uncharacterized LOC103691752 | | 3 | 8946673 | 8960015 | Rat | n/a | Region | gene |
| 1564379 | Tmem250 | transmembrane protein 250 | | 3 | 8962657 | 8966349 | Rat | n/a | Region | gene |
| 71078 | Lhx3 | LIM homeobox 3 | | 3 | 9026432 | 9035122 | Rat | n/a | Region | gene |
| 1584720 | Qsox2 | quiescin sulfhydryl oxidase 2 | | 3 | 9034994 | 9064649 | Rat | n/a | Region | gene |
| 41357595 | LOC120101510 | uncharacterized LOC120101510 | | 3 | 9064570 | 9072157 | Rat | n/a | Region | gene |
| 1565512 | Ccdc187 | coiled-coil domain containing 187 | | 3 | 9070192 | 9127001 | Rat | n/a | Region | gene |
| 628682 | Gpsm1 | G-protein signaling modulator 1 | | 3 | 9140816 | 9167828 | Rat | n/a | Region | gene |
| 1308635 | Dnlz | DNL-type zinc finger | | 3 | 9169948 | 9171727 | Rat | n/a | Region | gene |
| 708370 | Card9 | caspase recruitment domain family, member 9 | | 3 | 9171814 | 9180310 | Rat | n/a | Region | gene |
| 1309048 | Snapc4 | small nuclear RNA activating complex, polypeptide 4 | | 3 | 9182061 | 9200819 | Rat | n/a | Region | gene |
| 1305930 | Entr1 | endosome associated trafficking regulator 1 | | 3 | 9200967 | 9207688 | Rat | n/a | Region | gene |
| 727897 | Pmpca | peptidase, mitochondrial processing subunit alpha | | 3 | 9207731 | 9216846 | Rat | n/a | Region | gene |
| 620478 | Inpp5e | inositol polyphosphate-5-phosphatase E | | 3 | 9216776 | 9229539 | Rat | n/a | Region | gene |
| 2322350 | Sec16a | SEC16 homolog A, endoplasmic reticulum export factor | | 3 | 9229687 | 9264837 | Rat | n/a | Region | gene |
| 3187 | Notch1 | notch receptor 1 | | 3 | 9277955 | 9323531 | Rat | n/a | Region | gene |
| 9343998 | LOC103691754 | uncharacterized LOC103691754 | | 3 | 9327343 | 9349005 | Rat | n/a | Region | gene |
| 41350547 | LOC120101512 | uncharacterized LOC120101512 | | 3 | 9375300 | 9386809 | Rat | n/a | Region | gene |
| 41248999 | Rnu6-198 | RNA, U6 small nuclear 198 | | 3 | 9395033 | 9395140 | Rat | n/a | Region | gene |
| 708507 | Egfl7 | EGF-like-domain, multiple 7 | | 3 | 9404622 | 9416879 | Rat | n/a | Region | gene |
| 4888595 | Mir126a | microRNA 126a | | 3 | 9415063 | 9415180 | Rat | n/a | Region | gene |
| 2325386 | Mir126b | microRNA 126b | | 3 | 9415087 | 9415159 | Rat | n/a | Region | gene |
| 1309229 | Agpat2 | 1-acylglycerol-3-phosphate O-acyltransferase 2 | | 3 | 9416837 | 9428567 | Rat | n/a | Region | gene |
| 1308600 | Dipk1b | divergent protein kinase domain 1B | | 3 | 9455914 | 9464169 | Rat | n/a | Region | gene |
| 6493893 | LOC100911266 | uncharacterized LOC100911266 | | 3 | 9464619 | 9467510 | Rat | n/a | Region | gene |
| 41191940 | LOC120102017 | small nucleolar RNA SNORA43 | | 3 | 9465426 | 9465556 | Rat | n/a | Region | gene |
| 41287506 | LOC120102039 | small nucleolar RNA SNORA17 | | 3 | 9466700 | 9466831 | Rat | n/a | Region | gene |
| 1583505 | Lcnl | Lipocalin like | | 3 | 9472456 | 9477218 | Rat | n/a | Region | gene |
| 7725305 | Lcn4l3 | lipocalin 4 like 3 | | 3 | 9480271 | 9483554 | Rat | n/a | Region | gene |
| 2324065 | Rnf138-ps3 | ring finger protein 138, pseudogene 3 | | 3 | 9513111 | 9513771 | Rat | n/a | Region | gene |
| 620384 | Vegp2 | von Ebners gland protein 2 | | 3 | 9516457 | 9542088 | Rat | n/a | Region | gene |
| 619872 | Lcn1 | lipocalin 1 | | 3 | 9532860 | 9537859 | Rat | n/a | Region | gene |
| 2322107 | Rpl9-ps31 | ribosomal protein L9, pseudogene 31 | | 3 | 9583895 | 9584606 | Rat | n/a | Region | gene |
| 1597179 | Got2-ps5 | glutamic-oxaloacetic transaminase 2, pseudogene 5 | | 3 | 9679195 | 9680482 | Rat | n/a | Region | gene |
| 628609 | Abo3 | histo-blood group ABO system transferase 3 | | 3 | 9743861 | 9761049 | Rat | n/a | Region | gene |
| 1596715 | Lcn4 | lipocalin 4 | | 3 | 9799245 | 9802114 | Rat | n/a | Region | gene |
| 1596705 | Lcn4l2 | lipocalin 4 like 2 | | 3 | 9914346 | 9917729 | Rat | n/a | Region | gene |
| 1311152 | Abo2 | histo-blood group ABO system transferase 2 | | 3 | 10011475 | 10028397 | Rat | n/a | Region | gene |
| 1595411 | Slbp-ps2 | stem-loop binding protein, pseudogene 2 | | 3 | 10051827 | 10052637 | Rat | n/a | Region | gene |
| 1584372 | Rps13-ps10 | ribosomal protein S13, pseudogene 10 | | 3 | 10128084 | 10128616 | Rat | n/a | Region | gene |
| 41264059 | Lcn4l1 | lipocalin 4-like 1 | | 3 | 10137851 | 10141190 | Rat | n/a | Region | gene |
| 2307241 | Abo | ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase | | 3 | 10162087 | 10182835 | Rat | n/a | Region | gene |
| 7679486 | Ensa-ps1 | endosulfine alpha, pseudogene 1 | | 3 | 10212297 | 10212906 | Rat | n/a | Region | gene |
| 1307382 | Surf6 | surfeit 6 | | 3 | 10221450 | 10232306 | Rat | n/a | Region | gene |
| 1564893 | Med22 | mediator complex subunit 22 | | 3 | 10233754 | 10238836 | Rat | n/a | Region | gene |
| 1307586 | Rpl7a | ribosomal protein L7A | | 3 | 10239026 | 10241703 | Rat | n/a | Region | gene |
| 41058081 | Snord24 | small nucleolar RNA, C/D box 24 | | 3 | 10239556 | 10239630 | Rat | n/a | Region | gene |
| 40983741 | LOC120101983 | small nucleolar RNA SNORD36 | | 3 | 10240528 | 10240609 | Rat | n/a | Region | gene |
| 41069721 | LOC120101982 | small nucleolar RNA SNORD36 | | 3 | 10240847 | 10240917 | Rat | n/a | Region | gene |
| 41339187 | LOC120101984 | small nucleolar RNA SNORD36 | | 3 | 10241187 | 10241257 | Rat | n/a | Region | gene |
| 620527 | Surf1 | SURF1, cytochrome c oxidase assembly factor | | 3 | 10241793 | 10244686 | Rat | n/a | Region | gene |
| 1565817 | Surf2 | surfeit 2 | | 3 | 10244654 | 10248502 | Rat | n/a | Region | gene |
| 1561980 | Surf4 | surfeit 4 | | 3 | 10248360 | 10261537 | Rat | n/a | Region | gene |
| 1307355 | Stkld1 | serine/threonine kinase-like domain containing 1 | | 3 | 10261583 | 10280850 | Rat | n/a | Region | gene |
| 1306220 | Rexo4 | REX4 homolog, 3'-5' exonuclease | | 3 | 10280654 | 10291003 | Rat | n/a | Region | gene |
| 1311594 | Adamts13 | ADAM metallopeptidase with thrombospondin type 1 motif, 13 | | 3 | 10299264 | 10338464 | Rat | n/a | Region | gene |
| 7600298 | LOC102548484 | uncharacterized LOC102548484 | | 3 | 10335794 | 10342922 | Rat | n/a | Region | gene |
| 1311501 | Cacfd1 | calcium channel flower domain containing 1 | | 3 | 10335881 | 10352437 | Rat | n/a | Region | gene |
| 1309317 | Slc2a6 | solute carrier family 2 member 6 | | 3 | 10348395 | 10355208 | Rat | n/a | Region | gene |
| 1306074 | Mymk | myomaker, myoblast fusion factor | | 3 | 10388363 | 10397294 | Rat | n/a | Region | gene |
| 1305459 | Adamtsl2 | ADAMTS-like 2 | | 3 | 10397774 | 10434557 | Rat | n/a | Region | gene |
| 1597714 | Fam163b | family with sequence similarity 163, member B | | 3 | 10437383 | 10466458 | Rat | n/a | Region | gene |
| 2489 | Dbh | dopamine beta-hydroxylase | | 3 | 10488260 | 10505245 | Rat | n/a | Region | gene |
| 621125 | Sardh | sarcosine dehydrogenase | | 3 | 10510553 | 10575342 | Rat | n/a | Region | gene |
| 7682627 | LOC102548789 | uncharacterized LOC102548789 | | 3 | 10539837 | 10541623 | Rat | n/a | Region | gene |
| 1306285 | Vav2 | vav guanine nucleotide exchange factor 2 | | 3 | 10584688 | 10754128 | Rat | n/a | Region | gene |
| 6492996 | Brd3os | BRD3 opposite strand | | 3 | 10770229 | 10771860 | Rat | n/a | Region | gene |
| 1308925 | Brd3 | bromodomain containing 3 | | 3 | 10773163 | 10829675 | Rat | n/a | Region | gene |
| 7489046 | Mir7578 | microRNA 7578 | | 3 | 10778090 | 10778171 | Rat | n/a | Region | gene |
| 41113215 | LOC120102083 | small nucleolar RNA SNORA26 | | 3 | 10822310 | 10822430 | Rat | n/a | Region | gene |
| 1305159 | Wdr5 | WD repeat domain 5 | | 3 | 10836964 | 10856682 | Rat | n/a | Region | gene |
| 41292532 | Trnaa-agc47 | transfer RNA alanine (anticodon AGC) 47 | | 3 | 10846477 | 10846558 | Rat | n/a | Region | gene |
| 40972164 | LOC120102096 | U6atac minor spliceosomal RNA | | 3 | 10859868 | 10859993 | Rat | n/a | Region | gene |
| 3610 | Rxra | retinoid X receptor alpha | | 3 | 10989832 | 11076366 | Rat | n/a | Region | gene |
| 70920 | Col5a1 | collagen type V alpha 1 chain | | 3 | 11208429 | 11356715 | Rat | n/a | Region | gene |
| 621222 | Fcnb | ficolin B | | 3 | 11393713 | 11402198 | Rat | n/a | Region | gene |
| 620320 | Olfm1 | olfactomedin 1 | | 3 | 11520522 | 11558240 | Rat | n/a | Region | gene |
| 1595050 | Ppp1r26 | protein phosphatase 1, regulatory subunit 26 | | 3 | 11781504 | 11790076 | Rat | n/a | Region | gene |
| 1306233 | Pierce1 | piercer of microtubule wall 1 | | 3 | 11797031 | 11801568 | Rat | n/a | Region | gene |
| 1309116 | Mrps2 | mitochondrial ribosomal protein S2 | | 3 | 11803044 | 11806341 | Rat | n/a | Region | gene |
| 1591938 | Gbgt1 | globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) | | 3 | 11826131 | 11829745 | Rat | n/a | Region | gene |
| 3533 | Ralgds | ral guanine nucleotide dissociation stimulator | | 3 | 11839686 | 11880059 | Rat | n/a | Region | gene |
| 2331 | Cel | carboxyl ester lipase | | 3 | 11883532 | 11891035 | Rat | n/a | Region | gene |
| 1305173 | Gtf3c5 | general transcription factor IIIC subunit 5 | | 3 | 11893867 | 11914187 | Rat | n/a | Region | gene |
| 41017381 | Rnu6-592 | RNA, U6 small nuclear 592 | | 3 | 11926976 | 11927077 | Rat | n/a | Region | gene |
| 1311727 | Gfi1b | growth factor independent 1B transcriptional repressor | | 3 | 11940232 | 11952989 | Rat | n/a | Region | gene |
| 620124 | Tsc1 | TSC complex subunit 1 | | 3 | 11969547 | 12018591 | Rat | n/a | Region | gene |
| 727909 | Spaca9 | sperm acrosome associated 9 | | 3 | 12019376 | 12028801 | Rat | n/a | Region | gene |
| 1303144 | Ak8 | adenylate kinase 8 | | 3 | 12028895 | 12144468 | Rat | n/a | Region | gene |
| 41345559 | Rnu1-136 | RNA, U1 small nuclear 136 | | 3 | 12149416 | 12149579 | Rat | n/a | Region | gene |
| 1592609 | Gtf3c4 | general transcription factor IIIC subunit 4 | | 3 | 12154803 | 12172795 | Rat | n/a | Region | gene |
| 1304895 | Ddx31 | DEAD-box helicase 31 | | 3 | 12172829 | 12238392 | Rat | n/a | Region | gene |
| 620648 | Barhl1 | BarH-like homeobox 1 | | 3 | 12241327 | 12248649 | Rat | n/a | Region | gene |
| 1564114 | Cfap77 | cilia and flagella associated protein 77 | | 3 | 12258453 | 12381319 | Rat | n/a | Region | gene |
| 1565673 | Ttf1 | transcription termination factor 1 | | 3 | 12384626 | 12409257 | Rat | n/a | Region | gene |
| 11377311 | LOC108350345 | uncharacterized LOC108350345 | | 3 | 12409406 | 12427689 | Rat | n/a | Region | gene |
| 1565575 | Setx | senataxin | | 3 | 12428091 | 12480801 | Rat | n/a | Region | gene |
| 1307089 | Ntng2 | netrin G2 | | 3 | 12492574 | 12551104 | Rat | n/a | Region | gene |
| 1564993 | Med27 | mediator complex subunit 27 | | 3 | 12629593 | 12803340 | Rat | n/a | Region | gene |
| 619793 | Rapgef1 | Rap guanine nucleotide exchange factor 1 | | 3 | 12898349 | 13016234 | Rat | n/a | Region | gene |
| 7582623 | Prrt1b | proline rich transmembrane protein 1B | | 3 | 13019852 | 13028865 | Rat | n/a | Region | gene |
| 7579002 | Golga2l1 | golgin A2 like 1 | | 3 | 13033431 | 13040798 | Rat | n/a | Region | gene |
| 1359394 | Trub2 | TruB pseudouridine synthase family member 2 | | 3 | 13049220 | 13059836 | Rat | n/a | Region | gene |
| 1304638 | Coq4 | coenzyme Q4 | | 3 | 13060054 | 13070502 | Rat | n/a | Region | gene |
| 1307383 | Slc27a4 | solute carrier family 27 member 4 | | 3 | 13075022 | 13087943 | Rat | n/a | Region | gene |
| 1306599 | Urm1 | ubiquitin related modifier 1 | | 3 | 13100340 | 13117064 | Rat | n/a | Region | gene |
| 41238331 | LOC120101515 | uncharacterized LOC120101515 | | 3 | 13117977 | 13119546 | Rat | n/a | Region | gene |
| 1304778 | Cercam | cerebral endothelial cell adhesion molecule | | 3 | 13118150 | 13155960 | Rat | n/a | Region | gene |
| 4888575 | Mir2964 | microRNA 2964 | | 3 | 13118623 | 13118722 | Rat | n/a | Region | gene |
| 2325334 | Mir219-2 | microRNA 219-2 | | 3 | 13118626 | 13118721 | Rat | n/a | Region | gene |
| 3229 | Odf2 | outer dense fiber of sperm tails 2 | | 3 | 13160981 | 13207223 | Rat | n/a | Region | gene |
| 1307329 | Gle1 | GLE1 RNA export mediator | | 3 | 13209312 | 13237018 | Rat | n/a | Region | gene |
| 621714 | Sptan1 | spectrin, alpha, non-erythrocytic 1 | | 3 | 13241164 | 13306047 | Rat | n/a | Region | gene |
| 1359465 | Dync2i2 | dynein 2 intermediate chain 2 | | 3 | 13306039 | 13322121 | Rat | n/a | Region | gene |
| 41368318 | Set | Set nuclear proto-oncogene | | 3 | 13334564 | 13345598 | Rat | n/a | Region | gene |
| 1305921 | Pkn3 | protein kinase N3 | | 3 | 13350082 | 13363572 | Rat | n/a | Region | gene |
| 1306593 | Zdhhc12 | zinc finger DHHC-type palmitoyltransferase 12 | | 3 | 13363504 | 13366383 | Rat | n/a | Region | gene |
| 1310284 | Zer1 | zyg-11 related, cell cycle regulator | | 3 | 13369688 | 13397524 | Rat | n/a | Region | gene |
| 1591937 | Tbc1d13 | TBC1 domain family, member 13 | | 3 | 13408944 | 13425524 | Rat | n/a | Region | gene |
| 1310763 | Endog | endonuclease G | | 3 | 13449113 | 13451715 | Rat | n/a | Region | gene |
| 1563514 | Spout1 | SPOUT domain containing methyltransferase 1 | | 3 | 13451191 | 13458918 | Rat | n/a | Region | gene |
| 1306912 | Kyat1 | kynurenine aminotransferase 1 | | 3 | 13459598 | 13493308 | Rat | n/a | Region | gene |
| 11422106 | LOC108350591 | glyceraldehyde-3-phosphate dehydrogenase pseudogene | | 3 | 13497745 | 13502170 | Rat | n/a | Region | gene |
| 1311690 | Lrrc8a | leucine rich repeat containing 8 VRAC subunit A | | 3 | 13509577 | 13537174 | Rat | n/a | Region | gene |
| 1310377 | Phyhd1 | phytanoyl-CoA dioxygenase domain containing 1 | | 3 | 13535670 | 13553797 | Rat | n/a | Region | gene |
| 41021698 | LOC120101891 | uncharacterized LOC120101891 | | 3 | 13536425 | 13538891 | Rat | n/a | Region | gene |
| 1310821 | Dolk | dolichol kinase | | 3 | 13557826 | 13559864 | Rat | n/a | Region | gene |
| 1306022 | Nup188 | nucleoporin 188 | | 3 | 13559917 | 13616313 | Rat | n/a | Region | gene |
| 1305886 | Sh3glb2 | SH3 domain-containing GRB2-like endophilin B2 | | 3 | 13616936 | 13631785 | Rat | n/a | Region | gene |
| 1310887 | Miga2 | mitoguardin 2 | | 3 | 13636235 | 13658895 | Rat | n/a | Region | gene |
| 1586630 | Rpl38l5 | ribosomal protein L38 like 5 | | 3 | 13662966 | 13663913 | Rat | n/a | Region | gene |
| 1307447 | Dolpp1 | dolichyldiphosphatase 1 | | 3 | 13666000 | 13674312 | Rat | n/a | Region | gene |
| 41403195 | LOC120102100 | U2 spliceosomal RNA | | 3 | 13672511 | 13672701 | Rat | n/a | Region | gene |
| 1303031 | Crat | carnitine O-acetyltransferase | | 3 | 13675684 | 13689282 | Rat | n/a | Region | gene |
| 1308354 | Ptpa | protein phosphatase 2 phosphatase activator | | 3 | 13689742 | 13720287 | Rat | n/a | Region | gene |
| 1561058 | Ier5l | immediate early response 5-like | | 3 | 13744056 | 13745647 | Rat | n/a | Region | gene |
| 41136913 | LOC120101516 | uncharacterized LOC120101516 | | 3 | 13747215 | 13754220 | Rat | n/a | Region | gene |
| 2320952 | LOC100361008 | Cytochrome c oxidase subunit 5A, mitochondrial-like | | 3 | 13803887 | 13804503 | Rat | n/a | Region | gene |
| 41342810 | LOC120101517 | uncharacterized LOC120101517 | | 3 | 13944092 | 13949236 | Rat | n/a | Region | gene |
| 1311084 | C3h9orf50 | similar to human chromosome 9 open reading frame 50 | | 3 | 14076679 | 14087036 | Rat | n/a | Region | gene |
| 1306582 | Ntmt1 | N-terminal Xaa-Pro-Lys N-methyltransferase 1 | | 3 | 14093374 | 14110565 | Rat | n/a | Region | gene |
| 1308445 | Asb6 | ankyrin repeat and SOCS box-containing 6 | | 3 | 14110628 | 14115274 | Rat | n/a | Region | gene |
| 1311471 | Prrx2 | paired related homeobox 2 | | 3 | 14132574 | 14168533 | Rat | n/a | Region | gene |
| 62076 | Ptges | prostaglandin E synthase | | 3 | 14177892 | 14189236 | Rat | n/a | Region | gene |
| 1308431 | Tor1b | torsin family 1, member B | | 3 | 14243181 | 14249279 | Rat | n/a | Region | gene |
| 628863 | Tor1a | torsin family 1, member A | | 3 | 14250667 | 14257704 | Rat | n/a | Region | gene |
| 1305178 | C3h9orf78 | similar to human chromosome 9 open reading frame 78 | | 3 | 14264262 | 14272552 | Rat | n/a | Region | gene |
| 1305621 | Usp20 | ubiquitin specific peptidase 20 | | 3 | 14272737 | 14306409 | Rat | n/a | Region | gene |
| 621350 | Fnbp1 | formin binding protein 1 | | 3 | 14309067 | 14424378 | Rat | n/a | Region | gene |
| 41151319 | LOC120102117 | U12 minor spliceosomal RNA | | 3 | 14345860 | 14346010 | Rat | n/a | Region | gene |
| 1305882 | Gpr107 | G protein-coupled receptor 107 | | 3 | 14431704 | 14497623 | Rat | n/a | Region | gene |
| 68417 | Ncs1 | neuronal calcium sensor 1 | | 3 | 14523220 | 14568829 | Rat | n/a | Region | gene |
| 1585467 | Hmcn2 | hemicentin 2 | | 3 | 14588353 | 14738320 | Rat | n/a | Region | gene |
| 2163 | Ass1 | argininosuccinate synthase 1 | | 3 | 14747355 | 14796909 | Rat | n/a | Region | gene |
| 41110934 | LOC120102084 | small nucleolar RNA SNORA26 | | 3 | 14768362 | 14768482 | Rat | n/a | Region | gene |
| 1307004 | Fubp3 | far upstream element binding protein 3 | | 3 | 14855527 | 14904540 | Rat | n/a | Region | gene |
| 1586401 | Prdm12 | PR/SET domain 12 | | 3 | 14928651 | 14943341 | Rat | n/a | Region | gene |
| 1306573 | Exosc2 | exosome component 2 | | 3 | 14962930 | 14973645 | Rat | n/a | Region | gene |
| 1584969 | Abl1 | ABL proto-oncogene 1, non-receptor tyrosine kinase | | 3 | 14979853 | 15083065 | Rat | n/a | Region | gene |
| 735020 | Qrfp | pyroglutamylated RFamide peptide | | 3 | 15088045 | 15088419 | Rat | n/a | Region | gene |
| 1309097 | Fibcd1 | fibrinogen C domain containing 1 | | 3 | 15092682 | 15126371 | Rat | n/a | Region | gene |
| 40980311 | LOC120101519 | uncharacterized LOC120101519 | | 3 | 15126919 | 15130446 | Rat | n/a | Region | gene |
| 1309399 | Lamc3 | laminin subunit gamma 3 | | 3 | 15165220 | 15226697 | Rat | n/a | Region | gene |
| 1305081 | Aif1l | allograft inflammatory factor 1-like | | 3 | 15229476 | 15254033 | Rat | n/a | Region | gene |
| 1304977 | Nup214 | nucleoporin 214 | | 3 | 15255111 | 15340568 | Rat | n/a | Region | gene |
| 1566351 | Fam78a | family with sequence similarity 78, member A | | 3 | 15355958 | 15376330 | Rat | n/a | Region | gene |
| 1305821 | Plpp7 | phospholipid phosphatase 7 (inactive) | | 3 | 15384461 | 15398820 | Rat | n/a | Region | gene |
| 41053147 | LOC120101521 | uncharacterized LOC120101521 | | 3 | 15417981 | 15422253 | Rat | n/a | Region | gene |
| 1595906 | Prrc2b | proline-rich coiled-coil 2B | | 3 | 15433357 | 15519105 | Rat | n/a | Region | gene |
| 41368742 | Snord62a | small nucleolar RNA, C/D box 62A | | 3 | 15506847 | 15506931 | Rat | n/a | Region | gene |
| 41397579 | Snord62b | small nucleolar RNA, C/D box 62B | | 3 | 15510515 | 15510599 | Rat | n/a | Region | gene |
| 620078 | Pomt1 | protein-O-mannosyltransferase 1 | | 3 | 15520717 | 15538579 | Rat | n/a | Region | gene |
| 1308313 | Uck1 | uridine-cytidine kinase 1 | | 3 | 15538580 | 15544465 | Rat | n/a | Region | gene |
| 1559966 | Swi5 | SWI5 homologous recombination repair protein | | 3 | 15574687 | 15583760 | Rat | n/a | Region | gene |
| 620282 | Golga2 | golgin A2 | | 3 | 15583862 | 15604279 | Rat | n/a | Region | gene |
| 71096 | Dnm1 | dynamin 1 | | 3 | 15604782 | 15648654 | Rat | n/a | Region | gene |
| 41286650 | LOC120102046 | U1 spliceosomal RNA | | 3 | 15650595 | 15650750 | Rat | n/a | Region | gene |
| 1305336 | Ciz1 | CDKN1A interacting zinc finger protein 1 | | 3 | 15658479 | 15673762 | Rat | n/a | Region | gene |
| 1561113 | Bbln | bublin coiled coil protein | | 3 | 15674577 | 15677322 | Rat | n/a | Region | gene |
| 69408 | Lcn2 | lipocalin 2 | | 3 | 15680688 | 15684033 | Rat | n/a | Region | gene |
| 1310836 | Ptges2 | prostaglandin E synthase 2 | | 3 | 15690501 | 15697688 | Rat | n/a | Region | gene |
| 41232171 | LOC120101523 | uncharacterized LOC120101523 | | 3 | 15694090 | 15695381 | Rat | n/a | Region | gene |
| 628666 | Slc25a25 | solute carrier family 25 member 25 | | 3 | 15708702 | 15742195 | Rat | n/a | Region | gene |
| 1597546 | Naif1 | nuclear apoptosis inducing factor 1 | | 3 | 15741239 | 15747672 | Rat | n/a | Region | gene |
| 41092074 | LOC120101524 | mitochondrial import inner membrane translocase subunit Tim17-B-like | | 3 | 15776678 | 15777190 | Rat | n/a | Region | gene |
| 1597535 | Eeig1 | estrogen-induced osteoclastogenesis regulator 1 | | 3 | 15822441 | 15854651 | Rat | n/a | Region | gene |
| 2514 | Dpm2 | dolichyl-phosphate mannosyltransferase subunit 2, regulatory | | 3 | 15855952 | 15858867 | Rat | n/a | Region | gene |
| 1597527 | Pip5kl1 | phosphatidylinositol-4-phosphate 5-kinase-like 1 | | 3 | 15860493 | 15869264 | Rat | n/a | Region | gene |
| 1303005 | St6galnac4 | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 | | 3 | 15872230 | 15885250 | Rat | n/a | Region | gene |
| 1303196 | St6galnac6 | ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 | | 3 | 15894275 | 15907502 | Rat | n/a | Region | gene |
| 2076 | Ak1 | adenylate kinase 1 | | 3 | 15912431 | 15923045 | Rat | n/a | Region | gene |
| 1593188 | Eng | endoglin | | 3 | 15934566 | 15972618 | Rat | n/a | Region | gene |
| 1587713 | Fpgs | folylpolyglutamate synthase | | 3 | 15972800 | 15993592 | Rat | n/a | Region | gene |
| 1359638 | Cdk9 | cyclin-dependent kinase 9 | | 3 | 15996467 | 16001315 | Rat | n/a | Region | gene |
| 1307287 | Sh2d3c | SH2 domain containing 3C | | 3 | 16010622 | 16046491 | Rat | n/a | Region | gene |
| 41245138 | Rnu6-899 | RNA, U6 small nuclear 899 | | 3 | 16029879 | 16029985 | Rat | n/a | Region | gene |
| 1359111 | Tor2a | torsin family 2, member A | | 3 | 16048591 | 16053198 | Rat | n/a | Region | gene |
| 2318922 | Ttc16 | tetratricopeptide repeat domain 16 | | 3 | 16052567 | 16064598 | Rat | n/a | Region | gene |
| 1310165 | Ptrh1 | peptidyl-tRNA hydrolase 1 homolog | | 3 | 16064867 | 16071098 | Rat | n/a | Region | gene |
| 1560002 | Cfap157 | cilia and flagella associated protein 157 | | 3 | 16066521 | 16073504 | Rat | n/a | Region | gene |
| 3785 | Stxbp1 | syntaxin binding protein 1 | | 3 | 16076725 | 16138431 | Rat | n/a | Region | gene |
| 1307018 | Niban2 | niban apoptosis regulator 2 | | 3 | 16174674 | 16224293 | Rat | n/a | Region | gene |
| 1564403 | Lrsam1 | leucine rich repeat and sterile alpha motif containing 1 | | 3 | 16223367 | 16264261 | Rat | n/a | Region | gene |
| 1565106 | Rpl12 | ribosomal protein L12 | | 3 | 16264269 | 16266645 | Rat | n/a | Region | gene |
| 41059769 | Snora65 | small nucleolar RNA, H/ACA box 65 | | 3 | 16265801 | 16265930 | Rat | n/a | Region | gene |
| 620611 | Slc2a8 | solute carrier family 2 member 8 | | 3 | 16274918 | 16284536 | Rat | n/a | Region | gene |
| 1564019 | Garnl3 | GTPase activating Rap/RanGAP domain-like 3 | | 3 | 16288718 | 16432308 | Rat | n/a | Region | gene |
| 41107518 | LOC120101525 | uncharacterized LOC120101525 | | 3 | 16311545 | 16314634 | Rat | n/a | Region | gene |
| 2319500 | Ralgps1 | Ral GEF with PH domain and SH3 binding motif 1 | | 3 | 16433323 | 16670276 | Rat | n/a | Region | gene |
| 620004 | Angptl2 | angiopoietin-like 2 | | 3 | 16517185 | 16547024 | Rat | n/a | Region | gene |
| 1596130 | Zbtb34 | zinc finger and BTB domain containing 34 | | 3 | 16703355 | 16726082 | Rat | n/a | Region | gene |
| 1310287 | Zbtb43 | zinc finger and BTB domain containing 43 | | 3 | 16744535 | 16763854 | Rat | n/a | Region | gene |
| 7578982 | LOC102550017 | uncharacterized LOC102550017 | | 3 | 16778359 | 16781260 | Rat | n/a | Region | gene |
| 41260489 | LOC120102022 | small nucleolar RNA SNORA48 | | 3 | 16853666 | 16853809 | Rat | n/a | Region | gene |
| 620843 | Lmx1b | LIM homeobox transcription factor 1 beta | | 3 | 16862195 | 16940899 | Rat | n/a | Region | gene |
| 9300457 | Rpl39l3 | ribosomal protein L39 like 3 | | 3 | 16969913 | 16970148 | Rat | n/a | Region | gene |
| 1309709 | Mvb12b | multivesicular body subunit 12B | | 3 | 17034002 | 17192658 | Rat | n/a | Region | gene |
| 41014645 | LOC120101526 | uncharacterized LOC120101526 | | 3 | 17241393 | 17247946 | Rat | n/a | Region | gene |
| 11425803 | LOC108350352 | uncharacterized LOC108350352 | | 3 | 17379638 | 17415805 | Rat | n/a | Region | gene |
| 1307198 | Pbx3 | PBX homeobox 3 | | 3 | 17488691 | 17682412 | Rat | n/a | Region | gene |
| 9255683 | LOC103691768 | uncharacterized LOC103691768 | | 3 | 17624286 | 17653427 | Rat | n/a | Region | gene |
| 1305363 | Mapkap1 | MAPK associated protein 1 | | 3 | 17715813 | 17918387 | Rat | n/a | Region | gene |
| 6490845 | Rps7-ps1 | ribosomal protein S7, pseudogene 1 | | 3 | 17745100 | 17745785 | Rat | n/a | Region | gene |
| 1307479 | Gapvd1 | GTPase activating protein and VPS9 domains 1 | | 3 | 17968345 | 18041888 | Rat | n/a | Region | gene |
| 2843 | Hspa5 | heat shock protein family A (Hsp70) member 5 | | 3 | 18055507 | 18059969 | Rat | n/a | Region | gene |
| 1310612 | Rabepk | Rab9 effector protein with kelch motifs | | 3 | 18061299 | 18083191 | Rat | n/a | Region | gene |
| 1310460 | Fbxw2 | F-box and WD repeat domain containing 2 | | 3 | 18088859 | 18114387 | Rat | n/a | Region | gene |
| 1308434 | Psmd5 | proteasome 26S subunit, non-ATPase 5 | | 3 | 18133715 | 18151000 | Rat | n/a | Region | gene |
| 1564854 | Cutal | cutA divalent cation tolerance homolog-like | | 3 | 18154300 | 18174957 | Rat | n/a | Region | gene |
| 1310390 | Phf19 | PHD finger protein 19 | | 3 | 18175281 | 18197289 | Rat | n/a | Region | gene |
| 41148686 | Rnu6-1256 | RNA, U6 small nuclear 1256 | | 3 | 18198660 | 18198758 | Rat | n/a | Region | gene |
| 1596290 | Traf1 | TNF receptor-associated factor 1 | | 3 | 18222024 | 18242163 | Rat | n/a | Region | gene |
| 2237 | C5 | complement C5 | | 3 | 18270696 | 18361994 | Rat | n/a | Region | gene |
| 1308742 | C5l1 | complement C5 like 1 | | 3 | 18401716 | 18420064 | Rat | n/a | Region | gene |
| 1305317 | Cntrl | centriolin | | 3 | 18428147 | 18500362 | Rat | n/a | Region | gene |
| 620881 | Rab14 | RAB14, member RAS oncogene family | | 3 | 18501953 | 18523253 | Rat | n/a | Region | gene |
| 7626419 | LOC102554040 | uncharacterized LOC102554040 | | 3 | 18548803 | 18551679 | Rat | n/a | Region | gene |
| 1303089 | Gsn | gelsolin | | 3 | 18585166 | 18638404 | Rat | n/a | Region | gene |
| 1305109 | Stom | stomatin | | 3 | 18645058 | 18667343 | Rat | n/a | Region | gene |
| 11415833 | Rps29-ps18 | ribosomal protein S29, pseudogene 18 | | 3 | 18652828 | 18653581 | Rat | n/a | Region | gene |
| 1565200 | Ggta1l1 | glycoprotein, alpha-galactosyltransferase 1-like 1 | | 3 | 18684676 | 18701674 | Rat | n/a | Region | gene |
| 41302246 | LOC120101528 | spermidine synthase-like | | 3 | 18709548 | 18710782 | Rat | n/a | Region | gene |
| 1560029 | 4930402F06Rikl | RIKEN cDNA 4930402F06 gene like | | 3 | 18711447 | 18729464 | Rat | n/a | Region | gene |
| 629476 | Ggta1 | glycoprotein alpha-galactosyltransferase 1 | | 3 | 18732985 | 18824916 | Rat | n/a | Region | gene |
| 41223777 | LOC120101529 | uncharacterized LOC120101529 | | 3 | 18809708 | 18826377 | Rat | n/a | Region | gene |
| 41235057 | LOC120101530 | uncharacterized LOC120101530 | | 3 | 18830803 | 18840164 | Rat | n/a | Region | gene |
| 7519941 | LOC102549213 | uncharacterized LOC102549213 | | 3 | 18859245 | 18864078 | Rat | n/a | Region | gene |
| 41334896 | LOC120101531 | uncharacterized LOC120101531 | | 3 | 18859690 | 18860308 | Rat | n/a | Region | gene |
| 40939483 | LOC120101532 | uncharacterized LOC120101532 | | 3 | 18868736 | 18875078 | Rat | n/a | Region | gene |
| 1564343 | Rps16-ps8 | ribosomal protein S16, pseudogene 8 | | 3 | 18899028 | 18899541 | Rat | n/a | Region | gene |
| 41255400 | LOC120101533 | uncharacterized LOC120101533 | | 3 | 18906574 | 18915565 | Rat | n/a | Region | gene |
| 621686 | Dab2ip | DAB2 interacting protein | | 3 | 18915290 | 19086282 | Rat | n/a | Region | gene |
| 1588742 | Ttll11 | tubulin tyrosine ligase like11 | | 3 | 19109891 | 19335077 | Rat | n/a | Region | gene |
| 41317518 | LOC120101534 | uncharacterized LOC120101534 | | 3 | 19244670 | 19265072 | Rat | n/a | Region | gene |
| 11412302 | LOC108350358 | uncharacterized LOC108350358 | | 3 | 19368410 | 19371814 | Rat | n/a | Region | gene |
| 40930499 | LOC120101535 | uncharacterized LOC120101535 | | 3 | 19371161 | 19375704 | Rat | n/a | Region | gene |
| 1306283 | Ndufa8 | NADH:ubiquinone oxidoreductase subunit A8 | | 3 | 19386062 | 19402090 | Rat | n/a | Region | gene |
| 1307739 | Morn5 | MORN repeat containing 5 | | 3 | 19402221 | 19430075 | Rat | n/a | Region | gene |
| 1306174 | Lhx6 | LIM homeobox 6 | | 3 | 19432439 | 19456268 | Rat | n/a | Region | gene |
| 1307411 | Rbm18 | RNA binding motif protein 18 | | 3 | 19467333 | 19487171 | Rat | n/a | Region | gene |
| 1305897 | Mrrf | mitochondrial ribosome recycling factor | | 3 | 19487124 | 19543911 | Rat | n/a | Region | gene |
| 41328151 | LOC120101536 | uncharacterized LOC120101536 | | 3 | 19569291 | 19569873 | Rat | n/a | Region | gene |
| 3439 | Ptgs1 | prostaglandin-endoperoxide synthase 1 | | 3 | 19584015 | 19605589 | Rat | n/a | Region | gene |
| 1561766 | Btf3-ps8 | basic transcription factor 3, pseudogene 8 | | 3 | 19620916 | 19621457 | Rat | n/a | Region | gene |
| 1332877 | Or1u2-ps1 | olfactory receptor family 1 subfamily U member 2, pseudogene 1 | | 3 | 19641105 | 19641968 | Rat | n/a | Region | gene |
| 1334061 | Or1j8-ps1 | olfactory receptor family 1 subfamily J member 8, pseudogene 1 | | 3 | 19667179 | 19668113 | Rat | n/a | Region | gene |
| 1332916 | Or1j13b | olfactory receptor family 1 subfamily J member 13B | | 3 | 19712242 | 19713180 | Rat | n/a | Region | gene |
| 1333442 | Or1j8b | olfactory receptor family 1 subfamily J member 8B | | 3 | 19765230 | 19766168 | Rat | n/a | Region | gene |
| 1589699 | Klf5-ps1 | Kruppel-like factor 5, pseudogene 1 | | 3 | 19787340 | 19790302 | Rat | n/a | Region | gene |
| 1334157 | Or1j16b | olfactory receptor family 1 subfamily J member 16B | | 3 | 19803529 | 19806493 | Rat | n/a | Region | gene |
| 1333097 | Or1j22 | olfactory receptor family 1 subfamily J member 22 | | 3 | 19838771 | 19839700 | Rat | n/a | Region | gene |
| 1333418 | Or1j10 | olfactory receptor family 1 subfamily J member 10 | | 3 | 19871836 | 19872759 | Rat | n/a | Region | gene |
| 1333084 | Or1j15b | olfactory receptor family 1 subfamily J member 15B | | 3 | 19910738 | 19911667 | Rat | n/a | Region | gene |
| 1333467 | Or1j13 | olfactory receptor family 1 subfamily J member 13 | | 3 | 19946063 | 19947001 | Rat | n/a | Region | gene |
| 1333900 | Or1j14 | olfactory receptor family 1 subfamily J member 14 | | 3 | 20040462 | 20041400 | Rat | n/a | Region | gene |
| 1332955 | Or1j15 | olfactory receptor family 1 subfamily J member 15 | | 3 | 20067349 | 20068272 | Rat | n/a | Region | gene |
| 1334217 | Or1j16 | olfactory receptor family 1 subfamily J member 16 | | 3 | 20145158 | 20146096 | Rat | n/a | Region | gene |
| 1334184 | Or1j24-ps1 | olfactory receptor family 1 subfamily J member 24, pseudogene 1 | | 3 | 20191405 | 20192325 | Rat | n/a | Region | gene |
| 1333812 | Or1j12b | olfactory receptor family 1 subfamily J member 12B | | 3 | 20211305 | 20212240 | Rat | n/a | Region | gene |
| 1332629 | Or1j12 | olfactory receptor family 1 subfamily J member 12 | | 3 | 20269678 | 20270616 | Rat | n/a | Region | gene |
| 1333536 | Or1j13c | olfactory receptor family 1 subfamily J member 13C | | 3 | 20315162 | 20316100 | Rat | n/a | Region | gene |
| 1333882 | Or1j19 | olfactory receptor family 1 subfamily J member 19 | | 3 | 20339684 | 20340625 | Rat | n/a | Region | gene |
| 1333914 | Or1j21 | olfactory receptor family 1 subfamily J member 21 | | 3 | 20346535 | 20352728 | Rat | n/a | Region | gene |
| 1332682 | Or1j1 | olfactory receptor family 1 subfamily J member 1 | | 3 | 20383577 | 20384518 | Rat | n/a | Region | gene |
| 1333868 | Or1v2-ps1 | olfactory receptor family 1 subfamily V member 2, pseudogene 1 | | 3 | 20398005 | 20398768 | Rat | n/a | Region | gene |
| 1333082 | Or1j4 | olfactory receptor family 1 subfamily J member 4 | | 3 | 20409641 | 20410579 | Rat | n/a | Region | gene |
| 621629 | Or1n1 | olfactory receptor family 1 subfamily N member 1 | | 3 | 20413262 | 20414197 | Rat | n/a | Region | gene |
| 1333209 | Or1j20 | olfactory receptor family 1 subfamily J member 20 | | 3 | 20424125 | 20425072 | Rat | n/a | Region | gene |
| 1334305 | Or1n1b | olfactory receptor family 1 subfamily N member 1B | | 3 | 20444604 | 20445539 | Rat | n/a | Region | gene |
| 1333103 | Or1n2 | olfactory receptor family 1 subfamily N member 2 | | 3 | 20456464 | 20457417 | Rat | n/a | Region | gene |
| 1333496 | Or1l8 | olfactory receptor family 1 subfamily L member 8 | | 3 | 20472362 | 20473294 | Rat | n/a | Region | gene |
| 1334437 | Or1ak2 | olfactory receptor family 1 subfamily AK member 2 | | 3 | 20483921 | 20484868 | Rat | n/a | Region | gene |
| 41347654 | LOC120102126 | U4 spliceosomal RNA | | 3 | 20503965 | 20504098 | Rat | n/a | Region | gene |
| 1333656 | Or1q1 | olfactory receptor family 1 subfamily Q member 1 | | 3 | 20506995 | 20507921 | Rat | n/a | Region | gene |
| 1333411 | Or12k5 | olfactory receptor family 12 subfamily K member 5 | | 3 | 20517682 | 20518674 | Rat | n/a | Region | gene |
| 1332758 | Or12k7b | olfactory receptor family 12 subfamily K member 7B | | 3 | 20551788 | 20552741 | Rat | n/a | Region | gene |
| 1334389 | Or12k7 | olfactory receptor family 12 subfamily K member 7 | | 3 | 20606887 | 20607873 | Rat | n/a | Region | gene |
| 1333742 | Or12k8 | olfactory receptor family 12 subfamily K member 8 | | 3 | 20622531 | 20623523 | Rat | n/a | Region | gene |
| 1333333 | Or1b1 | olfactory receptor family 1 subfamily B member 1 | | 3 | 20639976 | 20640929 | Rat | n/a | Region | gene |
| 1332825 | Or1l4b | olfactory receptor family 1 subfamily L member 4B | | 3 | 20699266 | 20700189 | Rat | n/a | Region | gene |
| 1332944 | Or1l4 | olfactory receptor family 1 subfamily L member 4 | | 3 | 20767129 | 20768064 | Rat | n/a | Region | gene |
| 1333332 | Or1af1 | olfactory receptor family 1 subfamily AF member 1 | | 3 | 20784545 | 20785474 | Rat | n/a | Region | gene |
| 41129592 | LOC120101432 | olfactory receptor 1G1-like | | 3 | 20807650 | 20808705 | Rat | n/a | Region | gene |
| 1334355 | Olr431-ps | olfactory receptor pseudogene 431 | | 3 | 20811916 | 20812126 | Rat | n/a | Region | gene |
| 1584028 | Or7c74 | olfactory receptor family 7 subfamily C member 74 | | 3 | 20836616 | 20837548 | Rat | n/a | Region | gene |
| 1332729 | Olr433-ps | olfactory receptor pseudogene 433 | | 3 | 20841563 | 20841791 | Rat | n/a | Region | gene |
| 1333139 | Or5c1 | olfactory receptor family 5 subfamily C member 1 | | 3 | 20862297 | 20863280 | Rat | n/a | Region | gene |
| 1584015 | Pdcl1-ps1 | phosducin-like 1, pseudogene 1 | | 3 | 20872691 | 20881151 | Rat | n/a | Region | gene |
| 1589698 | Nme2-ps6 | NME/NM23 nucleoside diphosphate kinase 2, pseudogene 6 | | 3 | 20881063 | 20883655 | Rat | n/a | Region | gene |
| 1588379 | Rrs1-ps10 | ribosome biogenesis regulator 1 homolog, pseudogene 10 | | 3 | 20939321 | 20942374 | Rat | n/a | Region | gene |
| 41003160 | Elob-ps11 | elongin B, pseduogene 11 | | 3 | 20986488 | 20987742 | Rat | n/a | Region | gene |
| 41209010 | Elob-ps7 | elongin B, pseduogene 7 | | 3 | 20990504 | 20992516 | Rat | n/a | Region | gene |
| 1582869 | Elob-ps14 | elongin B, pseduogene 14 | | 3 | 20995056 | 20995790 | Rat | n/a | Region | gene |
| 41266536 | Elob-ps3 | elongin B, pseduogene 3 | | 3 | 21002336 | 21003559 | Rat | n/a | Region | gene |
| 1590958 | LOC690876 | similar to transcription elongation factor B (SIII), polypeptide 2 | | 3 | 21006470 | 21007502 | Rat | n/a | Region | gene |
| 1588382 | Elob-ps8 | elongin B, pseduogene 8 | | 3 | 21017264 | 21018340 | Rat | n/a | Region | gene |
| 41101549 | Elob-ps13 | elongin B, pseduogene 13 | | 3 | 21021825 | 21022305 | Rat | n/a | Region | gene |
| 40987625 | Elob-ps15 | elongin B, pseduogene 15 | | 3 | 21025194 | 21026182 | Rat | n/a | Region | gene |
| 41185658 | Elob-ps5 | elongin B, pseduogene 5 | | 3 | 21029142 | 21030159 | Rat | n/a | Region | gene |
| 6493667 | Dlg5l2 | discs large MAGUK scaffold protein 5 like 2 | | 3 | 21062247 | 21072153 | Rat | n/a | Region | gene |
| 1591934 | Klf5-ps2 | Kruppel-like factor 5, pseudogene 2 | | 3 | 21071915 | 21073656 | Rat | n/a | Region | gene |
| 1582840 | Rrs1-ps1 | ribosome biogenesis regulator 1 homolog, pseudogene 1 | | 3 | 21088989 | 21090611 | Rat | n/a | Region | gene |
| 621135 | Pdcl | phosducin like | | 3 | 21110165 | 21119763 | Rat | n/a | Region | gene |
| 7654995 | Nme2-ps2 | NME/NM23 nucleoside diphosphate kinase 2, pseudogene 2 | | 3 | 21119423 | 21122807 | Rat | n/a | Region | gene |
| 1304833 | Rc3h2 | ring finger and CCCH-type domains 2 | | 3 | 21121531 | 21186711 | Rat | n/a | Region | gene |
| 41133334 | Snord90 | small nucleolar RNA, C/D box 90 | | 3 | 21162968 | 21163078 | Rat | n/a | Region | gene |
| 41083260 | Zbtb6l1 | zinc finger and BTB domain containing 6 like 1 | | 3 | 21185038 | 21192945 | Rat | n/a | Region | gene |
| 1306007 | Zbtb6 | zinc finger and BTB domain containing 6 | | 3 | 21189160 | 21207561 | Rat | n/a | Region | gene |
| 1308561 | Zbtb26 | zinc finger and BTB domain containing 26 | | 3 | 21195319 | 21207925 | Rat | n/a | Region | gene |
| 11425388 | LOC108350365 | uncharacterized LOC108350365 | | 3 | 21199410 | 21205009 | Rat | n/a | Region | gene |
| 1304691 | Rabgap1 | RAB GTPase activating protein 1 | | 3 | 21208012 | 21326013 | Rat | n/a | Region | gene |
| 1586383 | Gpr21 | G protein-coupled receptor 21 | | 3 | 21275289 | 21279008 | Rat | n/a | Region | gene |
| 620673 | Strbp | spermatid perinuclear RNA binding protein | | 3 | 21328310 | 21467753 | Rat | n/a | Region | gene |
| 41374491 | LOC120102124 | U4 spliceosomal RNA | | 3 | 21420354 | 21420481 | Rat | n/a | Region | gene |
| 1561137 | Rps16l1 | ribosomal protein S16 like 1 | | 3 | 21494155 | 21494684 | Rat | n/a | Region | gene |
| 41026169 | LOC120101537 | uncharacterized LOC120101537 | | 3 | 21527713 | 21534482 | Rat | n/a | Region | gene |
| 41016805 | LOC120101903 | uncharacterized LOC120101903 | | 3 | 21540383 | 21543108 | Rat | n/a | Region | gene |
| 1309368 | Crb2 | crumbs cell polarity complex component 2 | | 3 | 21542138 | 21564876 | Rat | n/a | Region | gene |
| 41337030 | LOC120101933 | U6 spliceosomal RNA | | 3 | 21551038 | 21551144 | Rat | n/a | Region | gene |
| 40941630 | LOC120101945 | U6 spliceosomal RNA | | 3 | 21551754 | 21551860 | Rat | n/a | Region | gene |
| 1307927 | Dennd1a | DENN domain containing 1A | | 3 | 21564749 | 22052057 | Rat | n/a | Region | gene |
| 71076 | Lhx2 | LIM homeobox 2 | | 3 | 22113619 | 22143909 | Rat | n/a | Region | gene |
| 40939602 | LOC120101538 | uncharacterized LOC120101538 | | 3 | 22245251 | 22257178 | Rat | n/a | Region | gene |
| 727779 | Nek6 | NIMA-related kinase 6 | | 3 | 22284269 | 22356302 | Rat | n/a | Region | gene |
| 621093 | Psmb7 | proteasome 20S subunit beta 7 | | 3 | 22357777 | 22417748 | Rat | n/a | Region | gene |
| 1596103 | Alg11-ps3 | ALG11, alpha-1,2-mannosyltransferase, pseudogene 3 | | 3 | 22428369 | 22429945 | Rat | n/a | Region | gene |
| 2318734 | Rps20-ps10 | ribosomal protein S20, pseudogene 10 | | 3 | 22430258 | 22430776 | Rat | n/a | Region | gene |
| 68350 | Nr5a1 | nuclear receptor subfamily 5, group A, member 1 | | 3 | 22464786 | 22486328 | Rat | n/a | Region | gene |
| 1564740 | Nr6a1 | nuclear receptor subfamily 6, group A, member 1 | | 3 | 22495109 | 22683132 | Rat | n/a | Region | gene |
| 2325335 | Mir181a2 | microRNA 181a-2 | | 3 | 22615845 | 22615961 | Rat | n/a | Region | gene |
| 2325454 | Mir181b2 | microRNA 181b-2 | | 3 | 22616948 | 22617035 | Rat | n/a | Region | gene |
| 41296457 | LOC120101539 | uncharacterized LOC120101539 | | 3 | 22618950 | 22632367 | Rat | n/a | Region | gene |
| 1311651 | Olfml2a | olfactomedin-like 2A | | 3 | 22688590 | 22717917 | Rat | n/a | Region | gene |
| 7749459 | Golga2l2 | golgin A2 like 2 | | 3 | 22716244 | 22731175 | Rat | n/a | Region | gene |
| 41157828 | LOC120102092 | small nucleolar RNA SNORA79 | | 3 | 22738072 | 22738216 | Rat | n/a | Region | gene |
| 1562587 | Wdr38 | WD repeat domain 38 | | 3 | 22750150 | 22753260 | Rat | n/a | Region | gene |
| 1303007 | Rpl35 | ribosomal protein L35 | | 3 | 22753255 | 22756217 | Rat | n/a | Region | gene |
| 1308867 | Arpc5l | actin related protein 2/3 complex, subunit 5-like | | 3 | 22758710 | 22767520 | Rat | n/a | Region | gene |
| 1311305 | Golga1 | golgin A1 | | 3 | 22765690 | 22812637 | Rat | n/a | Region | gene |
| 7707315 | Scail1 | suppressor of cancer cell invasion like 1 | | 3 | 22812719 | 22819111 | Rat | n/a | Region | gene |
| 1594720 | Scai | suppressor of cancer cell invasion | | 3 | 22813283 | 22925337 | Rat | n/a | Region | gene |
| 708460 | Ppp6c | protein phosphatase 6, catalytic subunit | | 3 | 22929816 | 22962123 | Rat | n/a | Region | gene |
| 1589697 | Rpl10-ps2 | ribosomal protein L10, pseudogene 2 | | 3 | 23033529 | 23034161 | Rat | n/a | Region | gene |
| 41241606 | LOC120102026 | small nucleolar RNA SNORA48 | | 3 | 23047435 | 23047574 | Rat | n/a | Region | gene |
| 1589739 | Vdac2-ps3 | voltage-dependent anion channel 2, pseudogene 3 | | 3 | 23215526 | 23222603 | Rat | n/a | Region | gene |
| 2323145 | Sp3-ps1 | Sp3 transcription factor, pseudogene 1 | | 3 | 23603181 | 23604872 | Rat | n/a | Region | gene |
| 40992520 | LOC120101997 | U7 small nuclear RNA | | 3 | 23624049 | 23624108 | Rat | n/a | Region | gene |
| 9093487 | LOC103691805 | 40S ribosomal protein S14 pseudogene | | 3 | 23711409 | 23711911 | Rat | n/a | Region | gene |
| 41337682 | LOC120102038 | small nucleolar RNA SNORA48 | | 3 | 23925168 | 23925311 | Rat | n/a | Region | gene |
| 2318320 | LOC100362366 | 40S ribosomal protein S17-like | | 3 | 24019820 | 24020305 | Rat | n/a | Region | gene |
| 11496785 | LOC108350551 | 60S ribosomal protein L12 pseudogene | | 3 | 24249814 | 24250522 | Rat | n/a | Region | gene |
| 41069797 | LOC120102003 | small nucleolar RNA SNORA70 | | 3 | 24555003 | 24555138 | Rat | n/a | Region | gene |
| 1561736 | Rpl10l3 | ribosomal protein L10A like 3 | | 3 | 24555080 | 24555585 | Rat | n/a | Region | gene |
| 1306160 | Lrp1b | LDL receptor related protein 1B | | 3 | 24594302 | 26715037 | Rat | n/a | Region | gene |
| 41034676 | Actg1-ps7 | actin, gamma 1, pseudogene 7 | | 3 | 25283269 | 25290132 | Rat | n/a | Region | gene |
| 41092566 | LOC120101541 | uncharacterized LOC120101541 | | 3 | 26890368 | 26909301 | Rat | n/a | Region | gene |
| 41393928 | LOC120102048 | small nucleolar RNA SNORA17 | | 3 | 26896499 | 26896629 | Rat | n/a | Region | gene |
| 41260220 | LOC120101542 | MLV-related proviral Env polyprotein-like | | 3 | 27333828 | 27335839 | Rat | n/a | Region | gene |
| 7704837 | LOC102547612 | uncharacterized LOC102547612 | | 3 | 9486586 | 9489575 | Rat | n/a | Region | gene |
| 9085992 | LOC103691755 | activated RNA polymerase II transcriptional coactivator p15 pseudogene | | 3 | 9531250 | 9532179 | Rat | n/a | Region | gene |
| 9339909 | LOC103691762 | microtubule-associated proteins 1A/1B light chain 3B pseudogene | | 3 | 11647516 | 11656307 | Rat | n/a | Region | gene |
| 7629611 | LOC102550392 | uncharacterized LOC102550392 | | 3 | 13813812 | 13823726 | Rat | n/a | Region | gene |
| 7576402 | LOC102554501 | uncharacterized LOC102554501 | | 3 | 13949383 | 13953181 | Rat | n/a | Region | gene |
| 9258213 | LOC103691765 | uncharacterized LOC103691765 | | 3 | 15508484 | 15521544 | Rat | n/a | Region | gene |
| 11375987 | LOC108350353 | uncharacterized LOC108350353 | | 3 | 17712496 | 17715730 | Rat | n/a | Region | gene |
| 9424697 | B3galt9 | beta-1,3-galactosyltransferase 9 | | 3 | 18121620 | 18124149 | Rat | n/a | Region | gene |
| 7519388 | LOC102548933 | uncharacterized LOC102548933 | | 3 | 18684837 | 18704251 | Rat | n/a | Region | gene |
| 41001645 | LOC120101901 | uncharacterized LOC120101901 | | 3 | 21095991 | 21099779 | Rat | n/a | Region | gene |
| 11473570 | Dpf3l1 | double PHD fingers 3 like 1 | | 3 | 22214694 | 22257038 | Rat | n/a | Region | gene |
| 7741314 | N4bp1-ps1 | Nedd4 binding protein 1, pseudogene 1 | | 3 | 23150472 | 23151651 | Rat | n/a | Region | gene |
| 41256826 | LOC120101994 | U7 small nuclear RNA | | 3 | 23623971 | 23624033 | Rat | n/a | Region | gene |
