Arpc5l (actin related protein 2/3 complex, subunit 5-like) - Rat Genome Database

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Gene: Arpc5l (actin related protein 2/3 complex, subunit 5-like) Rattus norvegicus
Analyze
Symbol: Arpc5l (Ensembl: Arpc5l-ps1)
Name: actin related protein 2/3 complex, subunit 5-like (Ensembl:actin related protein 2/3 complex, subunit 5-like, pseudogene 1)
RGD ID: 1308867
Description: Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm and glutamatergic synapse. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like); PARTICIPATES IN Fc gamma receptor mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: actin related protein 2/3 complex, subunit 5-like 1; actin-related protein 2/3 complex subunit 5-like protein; ARC16-2; arp2/3 complex 16 kDa subunit 2; Arpc5l1; LOC296710; MGC112865
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Arpc5l-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Celera321,193,183 - 21,200,804 (+)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15489334   PMID:19056867   PMID:20458337   PMID:21423176   PMID:23376485   PMID:24413018  


Genomics

Comparative Map Data
Arpc5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8343,169,518 - 43,177,224 (+)NCBIGRCr8
mRatBN7.2322,758,710 - 22,767,520 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl322,759,876 - 22,767,538 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx326,228,380 - 26,236,003 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0334,813,364 - 34,820,987 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0332,626,072 - 32,633,695 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0323,301,455 - 23,309,077 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0328,523,281 - 28,530,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4318,798,930 - 18,801,987 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1318,687,517 - 18,698,957 (+)NCBI
Celera321,193,183 - 21,200,804 (+)NCBICelera
Cytogenetic Map3q12NCBI
ARPC5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389124,862,130 - 124,877,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9124,862,130 - 124,877,733 (+)EnsemblGRCh38hg38GRCh38
GRCh379127,624,409 - 127,640,012 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369126,671,305 - 126,679,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 349124,711,037 - 124,719,249NCBI
Celera998,279,433 - 98,287,649 (+)NCBICelera
Cytogenetic Map9q33.3NCBI
HuRef997,243,876 - 97,252,092 (+)NCBIHuRef
CHM1_19127,780,255 - 127,788,468 (+)NCBICHM1_1
T2T-CHM13v2.09137,060,438 - 137,076,046 (+)NCBIT2T-CHM13v2.0
Arpc5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39238,895,283 - 38,905,889 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl238,895,360 - 38,905,889 (+)EnsemblGRCm39 Ensembl
GRCm38239,008,066 - 39,015,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl239,005,348 - 39,015,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37238,863,659 - 38,871,392 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36238,830,148 - 38,837,881 (+)NCBIMGSCv36mm8
Celera240,733,885 - 40,741,618 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map224.42NCBI
Arpc5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554193,360,189 - 3,367,531 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554193,360,189 - 3,367,531 (-)NCBIChiLan1.0ChiLan1.0
ARPC5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,480,948 - 14,489,327 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1914,483,292 - 14,491,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0995,989,650 - 95,998,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19124,505,769 - 124,515,396 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9124,505,769 - 124,515,396 (+)Ensemblpanpan1.1panPan2
ARPC5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1958,142,001 - 58,149,285 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl958,142,389 - 58,149,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha957,340,842 - 57,348,123 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0959,062,448 - 59,069,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl959,062,836 - 59,069,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1957,821,454 - 57,828,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0958,137,063 - 58,144,338 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0958,227,991 - 58,235,278 (-)NCBIUU_Cfam_GSD_1.0
Arpc5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947193,296,420 - 193,304,836 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648713,065,338 - 13,073,053 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648713,064,206 - 13,073,363 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARPC5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1265,642,260 - 265,654,018 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11265,645,800 - 265,653,513 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21299,468,496 - 299,479,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARPC5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11213,268,223 - 13,284,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1213,268,025 - 13,283,515 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660792,823,995 - 2,832,582 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arpc5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476010,322,034 - 10,329,616 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476010,322,034 - 10,333,234 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arpc5l
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:533
Count of miRNA genes:280
Interacting mature miRNAs:352
Transcripts:ENSRNOT00000019405
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145428441896Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)heart rate (CMO:0000002)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)31831145447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)31831145447233430Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)31831145447233430Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)31831145447233430Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)31831145447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31831145447233430Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)31831145447233430Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat

Markers in Region
RH143512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,767,671 - 22,767,954 (+)MAPPERmRatBN7.2
Rnor_6.0323,309,229 - 23,309,511NCBIRnor6.0
Rnor_5.0328,531,055 - 28,531,337UniSTSRnor5.0
RGSC_v3.4318,802,407 - 18,802,689UniSTSRGSC3.4
Celera321,200,956 - 21,201,238UniSTS
RH 3.4 Map3239.31UniSTS
Cytogenetic Map3q11UniSTS
AI852867  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2322,767,315 - 22,767,442 (+)MAPPERmRatBN7.2
Rnor_6.0323,308,873 - 23,308,999NCBIRnor6.0
Rnor_5.0328,530,699 - 28,530,825UniSTSRnor5.0
RGSC_v3.4318,802,051 - 18,802,177UniSTSRGSC3.4
Celera321,200,600 - 21,200,726UniSTS
Cytogenetic Map3q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000019405   ⟹   ENSRNOP00000019405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,759,900 - 22,767,538 (+)Ensembl
Rnor_6.0 Ensembl323,301,455 - 23,309,072 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096562   ⟹   ENSRNOP00000089031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,759,876 - 22,767,517 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112049   ⟹   ENSRNOP00000083929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl945,262,374 - 45,264,366 (-)Ensembl
RefSeq Acc Id: NM_001037767   ⟹   NP_001032856
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,602 - 43,177,224 (+)NCBI
mRatBN7.2322,759,898 - 22,767,520 (+)NCBI
Rnor_6.0323,301,455 - 23,309,077 (+)NCBI
Rnor_5.0328,523,281 - 28,530,903 (+)NCBI
RGSC_v3.4318,798,930 - 18,801,987 (+)RGD
Celera321,193,183 - 21,200,804 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104789   ⟹   XP_038960717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,518 - 43,177,224 (+)NCBI
mRatBN7.2322,758,710 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104791   ⟹   XP_038960719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
mRatBN7.2322,760,368 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104793   ⟹   XP_038960721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
mRatBN7.2322,760,320 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_039104794   ⟹   XP_038960722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,170,249 - 43,177,224 (+)NCBI
mRatBN7.2322,760,816 - 22,767,520 (+)NCBI
RefSeq Acc Id: XM_063283529   ⟹   XP_063139599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: XM_063283530   ⟹   XP_063139600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: XM_063283531   ⟹   XP_063139601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8343,169,570 - 43,177,224 (+)NCBI
RefSeq Acc Id: NP_001032856   ⟸   NM_001037767
- UniProtKB: Q4KM42 (UniProtKB/Swiss-Prot),   A1L108 (UniProtKB/Swiss-Prot),   A0A8L2QA00 (UniProtKB/TrEMBL),   A6JEW0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019405   ⟸   ENSRNOT00000019405
RefSeq Acc Id: XP_038960717   ⟸   XM_039104789
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960721   ⟸   XM_039104793
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960719   ⟸   XM_039104791
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038960722   ⟸   XM_039104794
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000089031   ⟸   ENSRNOT00000096562
RefSeq Acc Id: ENSRNOP00000083929   ⟸   ENSRNOT00000112049
RefSeq Acc Id: XP_063139599   ⟸   XM_063283529
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139600   ⟸   XM_063283530
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139601   ⟸   XM_063283531
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L108-F1-model_v2 AlphaFold A1L108 1-153 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692056
Promoter ID:EPDNEW_R2581
Type:initiation region
Name:Arpc5l_1
Description:actin related protein 2/3 complex, subunit 5-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0323,301,429 - 23,301,489EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308867 AgrOrtholog
BioCyc Gene G2FUF-49885 BioCyc
Ensembl Genes ENSRNOG00000014317 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000067388 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055008582 UniProtKB/Swiss-Prot
  ENSRNOG00060027966 UniProtKB/Swiss-Prot
  ENSRNOG00065027554 UniProtKB/Swiss-Prot
  ENSRNOG00065030619 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019405 ENTREZGENE
  ENSRNOT00000019405.8 UniProtKB/TrEMBL
  ENSRNOT00000096562.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112049.1 UniProtKB/Swiss-Prot
  ENSRNOT00055014489 UniProtKB/Swiss-Prot
  ENSRNOT00060048577 UniProtKB/Swiss-Prot
  ENSRNOT00065047515 UniProtKB/Swiss-Prot
  ENSRNOT00065052759 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7367835 IMAGE-MGC_LOAD
InterPro ARPC5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARPC5_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296710 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156477 IMAGE-MGC_LOAD
NCBI Gene 296710 ENTREZGENE
PANTHER PTHR12644 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12644:SF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam P16-Arc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arpc5l PhenoGen
PIRSF p16-ARC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014317 RatGTEx
  ENSRNOG00000067388 RatGTEx
  ENSRNOG00055008582 RatGTEx
  ENSRNOG00060027966 RatGTEx
  ENSRNOG00065027554 RatGTEx
  ENSRNOG00065030619 RatGTEx
Superfamily-SCOP SSF69103 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QA00 ENTREZGENE, UniProtKB/TrEMBL
  A1L108 ENTREZGENE
  A6JEW0 ENTREZGENE, UniProtKB/TrEMBL
  ARP5L_RAT UniProtKB/Swiss-Prot
  Q4KM42 ENTREZGENE
UniProt Secondary Q4KM42 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-08 Arpc5l  actin related protein 2/3 complex, subunit 5-like  Arpc5l1  actin related protein 2/3 complex, subunit 5-like 1  Name and Symbol changed 629549 APPROVED
2022-03-22 Arpc5l1  actin related protein 2/3 complex, subunit 5-like 1  Arpc5l  actin related protein 2/3 complex, subunit 5-like  Name and Symbol changed 629549 APPROVED
2005-12-06 Arpc5l  actin related protein 2/3 complex, subunit 5-like  Arpc5l_predicted  actin related protein 2/3 complex, subunit 5-like (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Arpc5l_predicted  actin related protein 2/3 complex, subunit 5-like (predicted)      Symbol and Name status set to approved 70820 APPROVED