Or1n1b (olfactory receptor family 1 subfamily N member 1B) - Rat Genome Database

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Gene: Or1n1b (olfactory receptor family 1 subfamily N member 1B) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or1n1b
Name: olfactory receptor family 1 subfamily N member 1B
RGD ID: 1334305
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR1N1 (olfactory receptor family 1 subfamily N member 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 416; olfactory receptor gene Olr416; olfactory receptor Olr416; Olr416; taste bud receptor protein TB 334; TB 334
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8340,835,491 - 40,836,426 (-)NCBIGRCr8
mRatBN7.2320,444,604 - 20,445,539 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl320,442,636 - 20,448,217 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx323,512,644 - 23,513,579 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0332,097,550 - 32,098,485 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0330,322,421 - 30,323,356 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0320,913,668 - 20,914,603 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl320,913,668 - 20,914,603 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0326,155,331 - 26,156,266 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4316,409,232 - 16,410,167 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1316,305,603 - 16,306,539 (-)NCBI
Celera315,115,805 - 15,116,740 (-)NCBICelera
Cytogenetic Map3p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1n1bRatdetection of chemical stimulus involved in sensory perception of smell involved_inIEAGO:00049841600115GO_REF:0000108GOCGO_REF:0000108
Or1n1bRatdetection of chemical stimulus involved in sensory perception of smell  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or1n1bRatG protein-coupled receptor signaling pathway involved_inIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or1n1bRatG protein-coupled receptor signaling pathway  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or1n1bRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276 and InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or1n1bRatsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or1n1bRatsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1n1bRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or1n1bRatmembrane located_inIEAInterPro:IPR000276 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Or1n1bRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Or1n1bRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1n1bRatG protein-coupled receptor activity enablesIEAUniProtKB-KW:KW-02971600115GO_REF:0000043UniProtGO_REF:0000043
Or1n1bRatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or1n1bRatolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or1n1bRatolfactory receptor activity  IEA (All species)1303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or1n1bRattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8921883  



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Variants in Or1n1b
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000049651
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)31737470335528639Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat

1 to 10 of 35 rows



circulatory system
endoderm
mesenchyme
mesoderm
reproductive system
respiratory system
4 1 4 4 1 1



Ensembl Acc Id: ENSRNOT00000049651   ⟹   ENSRNOP00000045723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl320,913,668 - 20,914,603 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119750   ⟹   ENSRNOP00000085113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl320,442,636 - 20,448,217 (-)Ensembl
RefSeq Acc Id: NM_001000387   ⟹   NP_001000387
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8340,835,491 - 40,836,426 (-)NCBI
mRatBN7.2320,444,604 - 20,445,539 (-)NCBI
Rnor_6.0320,913,668 - 20,914,603 (-)NCBI
Rnor_5.0326,155,331 - 26,156,266 (-)NCBI
RGSC_v3.4316,409,232 - 16,410,167 (-)RGD
Celera315,115,805 - 15,116,740 (-)RGD
Sequence:
Protein RefSeqs NP_001000387 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52909 (Get FASTA)   NCBI Sequence Viewer  
  EDL93115 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085113.1
  ENSRNOP00000109660
RefSeq Acc Id: NP_001000387   ⟸   NM_001000387
- UniProtKB: Q62942 (UniProtKB/TrEMBL),   F1M9D5 (UniProtKB/TrEMBL),   A6JUI2 (UniProtKB/TrEMBL),   A0A8I6A383 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045723   ⟸   ENSRNOT00000049651
Ensembl Acc Id: ENSRNOP00000085113   ⟸   ENSRNOT00000119750
G-protein coupled receptors family 1 profile

Name Modeler Protein Id AA Range Protein Structure
AF-Q62942-F1-model_v2 AlphaFold Q62942 1-311 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 30 of 30 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-49984 BioCyc
Ensembl Genes ENSRNOG00000029069 Ensembl
  ENSRNOG00000068962 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000084314 ENTREZGENE
Ensembl Transcript ENSRNOT00000119750.1 UniProtKB/TrEMBL
  ENSRNOT00000143836 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:296678 UniProtKB/TrEMBL
NCBI Gene 296678 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or1n1b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029069 RatGTEx
  ENSRNOG00000068962 RatGTEx
  ENSRNOG00000084314 RatGTEx
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A383 ENTREZGENE, UniProtKB/TrEMBL
  A6JUI2 ENTREZGENE, UniProtKB/TrEMBL
  F1M9D5 ENTREZGENE
  Q62942 ENTREZGENE
UniProt Secondary F1M9D5 UniProtKB/TrEMBL
  Q62942 UniProtKB/TrEMBL
1 to 30 of 30 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or1n1b  olfactory receptor family 1 subfamily N member 1B  Olr416  olfactory receptor 416  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr416  olfactory receptor 416   Olr416_predicted  olfactory receptor 416 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr416_predicted  olfactory receptor 416 (predicted)      Symbol and Name status set to approved 70820 APPROVED