Alc30 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Alc30 (Alcohol consumption QTL 30) Rattus norvegicus

Symbol: Alc30
Name: Alcohol consumption QTL 30
RGD ID: 8693641
Trait: drinking behavior trait   (VT:0001422)    
Measurement Type: calculated ethanol drink intake rate   (CMO:0001615)    
LOD Score: 2.0
P Value: 0.739
Variance: Not Available
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.035,654,639 - 25,105,730RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0311,017,022 - 30,321,122RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.436,004,284 - 20,676,398RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: BXH/Ipcv HXB/Ipcv 

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Measurement Method
scale  (IDA)

Vertebrate Trait

Rat Strain
BXH/Ipcv  (IEA)
HXB/Ipcv  (IEA)


References - curated
1. Vanderlinden LA, etal., Alcohol Clin Exp Res. 2014 Jun 24. doi: 10.1111/acer.12471.


Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs13455837)
Rat AssemblyChrPosition (strand)Source
Rnor_6.035,654,639 - 5,654,639RGD
Rnor_5.0311,017,022 - 11,017,022RGD
RGSC_v3.436,004,284 - 6,004,284RGD
Celera35,232,566 - 5,232,566RGD
Peak: (rs106373454)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0314,949,180 - 14,949,180RGD
Rnor_5.0320,260,507 - 20,260,507RGD
RGSC_v3.4314,728,161 - 14,728,161RGD
Celera313,687,495 - 13,687,495RGD
Flank 2: (rs106929875)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0325,105,730 - 25,105,730RGD
Rnor_5.0330,321,122 - 30,321,122RGD
RGSC_v3.4320,676,398 - 20,676,398RGD
Celera322,905,792 - 22,905,792RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general spans 10.3-30.3 Mb 8663441
qtl_general number of animals used: 70-100 days old males from HXB/BXH RI strains and the parental BN-Lx/CubPrin, SHR/OlaIpcvPrin 8663441
qtl_general software used: ANOVA 8663441
qtl_general this QTL correlates to week 7 pre-ADE alcohol consumption 8663441
qtl_general alcohol deprivation effect (ADE) was calculated as the amount of alcohol consumed (g/kg) during 24 hrs after deprivation minus average daily amount consumed in the week before deprivation period 8663441
qtl_general water and alcohol consumption were measured by weight 8663441
qtl_general measurement method: rats were given 10% EtOH for 1 week, then for 7 weeks they were given 2-bottle choice of water and EtOH followed by 2 week period of only water (alcohol deprivation); then 2 weeks of 2-bottle choice of water and EtOH followed by second 2 weeks of alcohol deprivation then 2 weeks of 2-bottle choice of water and EtOH followed by third 2 weeks of alcohol deprivation and 1 week of 2-bottle choice of water and EtOH 8663441