Mapkap1 (MAPK associated protein 1)

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Gene: Mapkap1 (MAPK associated protein 1) Rattus norvegicus

Analyze

Symbol:

Mapkap1

Name:

MAPK associated protein 1

RGD ID:

1305363

Description:

Predicted to enable enzyme binding activity; phosphatidylinositol-3,4-bisphosphate binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including TORC2 signaling; positive regulation of peptidyl-serine phosphorylation; and substantia nigra development. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be part of TORC2 complex. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human MAPKAP1 (MAPK associated protein 1); PARTICIPATES IN mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; INTERACTS WITH 2,4-dinitrotoluene; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100912221; LOC296648; mitogen-activated protein kinase 2-associated protein 1; mitogen-activated protein kinase associated protein 1; SAPK-interacting protein 1; stress-activated map kinase-interacting protein 1; target of rapamycin complex 2 subunit MAPKAP1; target of rapamycin complex 2 subunit MAPKAP1-like; TORC2 subunit MAPKAP1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MAPKAP1 (MAPK associated protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mapkap1 (mitogen-activated protein kinase associated protein 1)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mapkap1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MAPKAP1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MAPKAP1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mapkap1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MAPKAP1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MAPKAP1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mapkap1 (MAPK associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MAPKAP1 (MAPK associated protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mapkap1 (mitogen-activated protein kinase associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mapkap1 (mitogen-activated protein kinase associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVO1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Sin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sinh-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	17,715,813 - 17,918,387 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	17,715,834 - 17,918,384 (+)	Ensembl
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	13,484,838 - 13,701,757 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	18,808,956 - 19,022,969 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	13,439,919 - 13,643,105 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	13,336,290 - 13,539,477 (+)	NCBI
Celera	3	12,437,407 - 12,639,132 (+)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

Aroclor 1254 (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

cannabidiol (ISO)

carbamazepine (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

leflunomide (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

temozolomide (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

negative regulation of Ras protein signal transduction (ISO)

phosphorylation (ISO)

positive regulation of peptidyl-serine phosphorylation (ISO)

regulation of cellular response to oxidative stress (ISO)

substantia nigra development (ISO)

TORC2 signaling (IBA)

Cellular Component

cellular_component (ND)

cytoplasm (IBA)

cytoplasmic vesicle (IEA)

cytosol (IEA,ISO)

Golgi apparatus (ISO)

nucleoplasm (IEA,ISO)

plasma membrane (IBA,ISO)

TORC2 complex (IBA,ISO)

Molecular Function

molecular_function (ND)

phosphatidic acid binding (ISO)

phosphatidylinositol-3,4,5-trisphosphate binding (ISO)

phosphatidylinositol-3,4-bisphosphate binding (ISO)

phosphatidylinositol-3,5-bisphosphate binding (ISO)

phosphatidylinositol-4,5-bisphosphate binding (IBA,ISO)

protein binding (ISO)

protein kinase binding (ISO,ISS)

small GTPase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

mTOR signaling pathway (ISO)

phosphatidylinositol 3-kinase-Akt signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	mTOR signaling in growth control and disease.	Laplante M and Sabatini DM, Cell. 2012 Apr 13;149(2):274-93. doi: 10.1016/j.cell.2012.03.017.
4.	Molecular mechanisms of mTOR-mediated translational control.	Ma XM and Blenis J, Nat Rev Mol Cell Biol. 2009 May;10(5):307-18. Epub 2009 Apr 2.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:16962653	PMID:17303383	PMID:21177249	PMID:22926577

Genomics

Comparative Map Data

Mapkap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	17,715,813 - 17,918,387 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	3	17,715,834 - 17,918,384 (+)	Ensembl
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	13,484,838 - 13,701,757 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	18,808,956 - 19,022,969 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	13,439,919 - 13,643,105 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	13,336,290 - 13,539,477 (+)	NCBI
Celera	3	12,437,407 - 12,639,132 (+)	NCBI		Celera
Cytogenetic Map	3	p11	NCBI

MAPKAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	125,437,394 - 125,707,208 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	125,437,393 - 125,707,234 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	128,199,673 - 128,469,487 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	127,239,494 - 127,509,334 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	125,279,226 - 125,549,067	NCBI
Celera	9	98,848,793 - 99,118,649 (-)	NCBI
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	97,812,310 - 98,082,113 (-)	NCBI		HuRef
CHM1_1	9	128,349,298 - 128,620,475 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	137,636,609 - 137,907,172 (-)	NCBI

Mapkap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	34,296,783 - 34,514,970 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	2	34,296,783 - 34,514,962 (+)	Ensembl
GRCm38	2	34,406,771 - 34,624,958 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	34,406,771 - 34,624,950 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	34,287,545 - 34,480,470 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	34,254,034 - 34,446,959 (+)	NCBI			mm8
Celera	2	34,129,582 - 34,324,469 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Mapkap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	2,657,741 - 2,888,607 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	2,656,662 - 2,887,505 (+)	NCBI	ChiLan1.0	ChiLan1.0

MAPKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	125,072,133 - 125,336,658 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	125,072,137 - 125,336,658 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	96,561,157 - 96,825,478 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MAPKAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	57,447,115 - 57,699,979 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	57,446,832 - 57,699,950 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	56,647,161 - 56,899,816 (+)	NCBI
ROS_Cfam_1.0	9	58,367,505 - 58,620,300 (+)	NCBI
ROS_Cfam_1.0 Ensembl	9	58,367,243 - 58,621,463 (+)	Ensembl
UMICH_Zoey_3.1	9	57,125,622 - 57,378,510 (+)	NCBI
UNSW_CanFamBas_1.0	9	57,442,229 - 57,694,786 (+)	NCBI
UU_Cfam_GSD_1.0	9	57,533,163 - 57,785,902 (+)	NCBI

Mapkap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	193,742,076 - 193,974,492 (-)	NCBI
SpeTri2.0	NW_004936487	13,511,632 - 13,743,022 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MAPKAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	266,096,193 - 266,346,210 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	266,096,192 - 266,346,384 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	299,839,408 - 299,978,749 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MAPKAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	12,441,135 - 12,706,465 (+)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	12	12,441,150 - 12,707,804 (+)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666079	3,412,160 - 3,680,198 (-)	NCBI	Vero_WHO_p1.0

Mapkap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	9,587,926 - 9,829,680 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624760	9,588,021 - 9,828,045 (+)	NCBI	HetGla_female_1.0		hetGla2

Position Markers

D3Rat192

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	17,749,162 - 17,749,521 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,518,256 - 13,518,613	NCBI	Rnor6.0
Rnor_5.0	3	18,842,298 - 18,842,655	UniSTS	Rnor5.0
RGSC_v3.4	3	13,473,199 - 13,473,556	UniSTS	RGSC3.4
RGSC_v3.1	3	13,369,570 - 13,369,928	RGD
Celera	3	12,470,687 - 12,470,922	UniSTS
SHRSP x BN Map	3	4.6199	UniSTS
SHRSP x BN Map	3	4.6199	RGD
Cytogenetic Map	3	p11	UniSTS

RH125848

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	17,752,015 - 17,752,260 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,521,108 - 13,521,352	NCBI	Rnor6.0
Rnor_5.0	3	18,845,150 - 18,845,394	UniSTS	Rnor5.0
RGSC_v3.4	3	13,476,051 - 13,476,295	UniSTS	RGSC3.4
Celera	3	12,473,417 - 12,473,661	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH130453

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	17,917,086 - 17,917,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,700,471 - 13,700,686	NCBI	Rnor6.0
Rnor_5.0	3	19,021,671 - 19,021,886	UniSTS	Rnor5.0
RGSC_v3.4	3	13,642,817 - 13,643,032	UniSTS	RGSC3.4
Celera	3	12,638,844 - 12,639,059	UniSTS
RH 3.4 Map	3	135.8	UniSTS
Cytogenetic Map	3	p11	UniSTS

RH143519

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	17,716,585 - 17,716,720 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	13,485,688 - 13,485,822	NCBI	Rnor6.0
Rnor_5.0	3	18,809,730 - 18,809,864	UniSTS	Rnor5.0
RGSC_v3.4	3	13,440,627 - 13,440,761	UniSTS	RGSC3.4
Celera	3	12,438,115 - 12,438,249	UniSTS
RH 3.4 Map	3	145.0	UniSTS
Cytogenetic Map	3	p11	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	48
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000023889
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	42	57	41	19	41	8	11	74	35	41	11	8
Low		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000023889 ⟹ ENSRNOP00000023889

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	17,715,834 - 17,918,384 (+)	Ensembl
Rnor_6.0 Ensembl	3	13,484,838 - 13,701,757 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116389 ⟹ ENSRNOP00000091071

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	17,715,885 - 17,917,373 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119554 ⟹ ENSRNOP00000078499

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	17,715,848 - 17,917,375 (+)	Ensembl

RefSeq Acc Id:

NM_001011964 ⟹ NP_001011964

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,878 - 17,917,375 (+)	NCBI
Rnor_6.0	3	13,484,980 - 13,700,759 (+)	NCBI
Rnor_5.0	3	18,808,956 - 19,022,969 (+)	NCBI
RGSC_v3.4	3	13,439,919 - 13,643,105 (+)	RGD
Celera	3	12,437,407 - 12,639,132 (+)	RGD

Sequence:

show sequence

CAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGCGGCGGGGTCATGAGGGCGAGCCCGGGGC
GCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCCCGAGGACTTCGTGGGCGCAGGGTTCGGT
GTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCCCTCAGGGACGTGTCCTGGGCGAGGCGGC
CTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCCCCAGCCGTCGCCCCCTCGCCCGCGGAAC
CCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTCCAGCGGCGCCCGTTGGGGCCGTGCTCGG
TGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAGCTGGGTGTGTGACTTAGGTAGGTGAGCC
TGTGAAACAGTATGAAGAGGAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCC
TTCTTGGACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACA
CGGGAATGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTC
AGTGCCTGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATAC
GCCCAGTCTGTTGATATTACCTCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAGCTC
AAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAA
AGAAAGAAATTCTAAACAATCAGCCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAA
GAGAAACCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGC
AGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAGGGTCATGTGGGTACAACTGC
AACGAAGAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACT
GTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGA
GTGAAGGACGGGAGCCAAAGCTCAATGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGA
TGATGGGGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGC
TTCAGTACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCT
TTGTTCGAATAAATGCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCAT
GAAGGAGATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAGGCCCTCAG
TACCGCCTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGGACCTGGAGAGCACGCTGGAGAGCC
AGAATGCCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTCAAGGGCAGACGGAGTTTTCGAGGA
GGATTCACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTC
AAAGTCAGCATGATCCACAGACTGCGGTTCACAACTGACGTGCAGTTAGGTATCTCTGGAGACA
AAGTGGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCC
CATCTCAATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCAC
GCGGTCTTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACG
CAGCTACCGTCAGTGAAATCGTGCTCAAGGTTAACTACATCCTGGAGTCACGAGCAAGCACTGC
CCGTGCTGACTATTTTGCTCAAAAACAAAGAAAACTGAACAGGCGGACGAGCTTCAGCTTCCAG
AAGGAGAAGAAATCAGGGCAGCAGTGACACTGGCCTCCAGTCTGGTGCCACAACCCGGACTGCC
TGCAAGGCCAGGTGGACCAGAGTCCTCCGGCATCCTATAGAGCCAAGACCCGCAGACACAGGCT
GCTGGGCGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGACTGAAGCTTGGCCATGGTTCT
AAGTAGCAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCGGAGAGCTACTCAGCCGTGCTCACT
GTCTGGCAGCCCCAAGGGTGTACATAGATAGCCATGCCAGACATCTCCTTGCAACTTGATCAAA
TTTCTTAAACAAAGAACAAAGTGTACATTTCTTTTTTTCCTTTTAATAAACTCTTTATCATGGT
TGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006233949 ⟹ XP_006234011

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,917,375 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI
Rnor_5.0	3	18,808,956 - 19,022,969 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCC
CGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCC
CTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCC
CCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTC
CAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAG
CTGGGTGTGTGACTTAGGGCTTCATGCTTGCGAGCCTACCTTTAAACTGTTGCTGTTTCTTGGG
CTTTCTTGCCATAAATACTCCCTGGGCAAGCTCACTCACACCTATGGCTTCATCTGTCACATGT
ATGTTGATGTCTTCCAGATTTACACAGAGTTTTCTCCAGAGCTACAGGTAGGTGAGCCTGTGAA
ACAGTATGAAGAGGAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTG
GACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACGGGAA
TGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCC
TGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAG
TCTGTTGATATTACCTCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAGCTCAAAGAT
TAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAG
AAATTCTAAACAATCAGCCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAA
CCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGA
ATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAGGGTCATGTGGGTACAACTGCAACGAA
GAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTG
ACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAG
GACGGGAGCCAAAGCTCAATGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGG
GGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGCTTCAGT
ACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTC
GAATAAATGCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCATGAAGGA
GATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAGGCCCTCAGTACCGC
CTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGGACCTGGAGAGCACGCTGGAGAGCCAGAATG
CCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTC
ACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTCAAAGTC
AGCATGATCCACAGACTGCGGTTCACAACTGACGTGCAGTTAGGTATCTCTGGAGACAAAGTGG
AGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCCCATCTC
AATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCACGCGGTC
TTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACGCAGCTA
CCGTCAGTGAAATCGTGCTCAAGGTTAACTACATCCTGGAGTCACGAGCAAGCACTGCCCGTGC
TGACTATTTTGCTCAAAAACAAAGAAAACTGAACAGGCGGACGAGCTTCAGCTTCCAGAAGGAG
AAGAAATCAGGGCAGCAGTGACACTGGCCTCCAGTCTGGTGCCACAACCCGGACTGCCTGCAAG
GCCAGGTGGACCAGAGTCCTCCGGCATCCTATAGAGCCAAGACCCGCAGACACAGGCTGCTGGG
CGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGACTGAAGCTTGGCCATGGTTCTAAGTAG
CAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCGGAGAGCTACTCAGCCGTGCTCACTGTCTGG
CAGCCCCAAGGGTGTACATAGATAGCCATGCCAGACATCTCCTTGCAACTTGATCAAATTTCTT
AAACAAAGAACAAAGTGTACATTTCTTTTTTTCCTTTTAATAAACTCTTTATCATGGTTGGTAT
GATGGACCATTCTTTGGGGTGGAGGATTGACTGTATTATCTTCTTAAAAATCTATTCCCATATT
GAACAGGCAGATTACAAAAGCTGTGGTTGGAGCTCTCACAAGCAGTGTTTAGGGCTTAGCCAGT
AGCATTAGCTGTGCCATTTGTTTAAATGAGTGCATTTGCTTTGAGAATAGCATCTTACTAAAGT
TAGGAATGAGGACCTAGCATGTGCCGGGCGTGAGTGCGTGCATGGGTGCGTGCGTGGGTGTGTG
CCTGCGTGCGTGTGTCCAAGGCTGTTATTTTCCCCTTCTAAGGTCTTCTCAACATGTCAGCACC
TGTGATCCAAGGGACAGGTGCTGGTAGGAGAGTGTGACAGTGTCTCCAGGTGGTGCTGAGTCCC
CAGCCAGAGTCCTCTCTCCTCTTCTCATAGCAAGTATGATATGGTCAGCTTGCCTCGCTGGCCA
TGAAGCTTTCTCTGATCCTTCTACCGGTGCCTCCTGTGGGGCCGGAAACTGCTGCTGCTATGCT
GAATCCGGGGAAGGAGAGCAAGCCCTGAGCAGAAAAGGCAAGGTGCCCAGTACCTTGACATCAC
ACCACACCTCTGCCTACACCAGATGCCTCTGCAGACCTTACCTTGGTCCCGCCTGTGGCAGCAT
CCTTTCATACTGTCTTGGGCCAGGGCCACAGCCGATATCTTATACGACCTGTGTTTCGGACATT
TTTTAAATCATTGTATCCAAGCATCTCAGAGACAAGTGTGCTTCTTTGCGAAAGGGTCAACTGA
ATGAATGCTTCTCCCACTCTGATCTGTTCAGCCAACAGGAGCACCCTTTTCTAATGTCTTCCAC
TCCTAACTCTTCTCCCCACCCCCCAAAAAAGGAATATTATTTGTAGCTTGCTCTGTATTTGAAT
TTTTAGCAATTTTATATTTAGATATCTTTGAAAATGTAAATGACTAATTTGGTCATTAAATCTT
GTCACATATTCAATATTAAGATACTAAAATAAAAGTCATAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_006233950 ⟹ XP_006234012

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,840 - 17,917,375 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI
Rnor_5.0	3	18,808,956 - 19,022,969 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGTGAGCCTGTGAA
ACAGTATGAAGAGGAGAAAATAGCCTTTTAAAGAGACTGGCCCACAGAAAGGATGGCCTTCTTG
GACAATCCAACTATCATTCTAGCTCATATTCGACAGTCACATGTGACCAGTGATGACACGGGAA
TGTGTGAGATGGTTCTCATTGATCATGACGTTGACCTAGAGAAGACTCATCCTCCGTCAGTGCC
TGGAGACAGTGGGTCAGAAGTTCAGGGAAGCAGTGGTGAGACGCAGGGCTACATATACGCCCAG
TCTGTTGATATTACCTCGAGCTGGGACTTTGGTATTAGAAGACGCTCAAACACAGCTCAAAGAT
TAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAG
AAATTCTAAACAATCAGCCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAA
CCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGA
ATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAGGGTCATGTGGGTACAACTGCAACGAA
GAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTG
ACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAG
GACGGGAGCCAAAGCTCAATGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGG
GGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGCTTCAGT
ACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTC
GAATAAATGCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCATGAAGGA
GATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAGGCCCTCAGTACCGC
CTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGGACCTGGAGAGCACGCTGGAGAGCCAGAATG
CCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTC
ACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTCAAAGTC
AGCATGATCCACAGACTGCGGTTCACAACTGACGTGCAGTTAGGTATCTCTGGAGACAAAGTGG
AGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCCCATCTC
AATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCACGCGGTC
TTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACGCAGCTA
CCGTCAGTGAAATCGTGCTCAAGGTTAACTACATCCTGGAGTCACGAGCAAGCACTGCCCGTGC
TGACTATTTTGCTCAAAAACAAAGAAAACTGAACAGGCGGACGAGCTTCAGCTTCCAGAAGGAG
AAGAAATCAGGGCAGCAGTGACACTGGCCTCCAGTCTGGTGCCACAACCCGGACTGCCTGCAAG
GCCAGGTGGACCAGAGTCCTCCGGCATCCTATAGAGCCAAGACCCGCAGACACAGGCTGCTGGG
CGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGACTGAAGCTTGGCCATGGTTCTAAGTAG
CAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCGGAGAGCTACTCAGCCGTGCTCACTGTCTGG
CAGCCCCAAGGGTGTACATAGATAGCCATGCCAGACATCTCCTTGCAACTTGATCAAATTTCTT
AAACAAAGAACAAAGTGTACATTTCTTTTTTTCCTTTTAATAAACTCTTTATCATGGTTGGTAT
GATGGACCATTCTTTGGGGTGGAGGATTGACTGTATTATCTTCTTAAAAATCTATTCCCATATT
GAACAGGCAGATTACAAAAGCTGTGGTTGGAGCTCTCACAAGCAGTGTTTAGGGCTTAGCCAGT
AGCATTAGCTGTGCCATTTGTTTAAATGAGTGCATTTGCTTTGAGAATAGCATCTTACTAAAGT
TAGGAATGAGGACCTAGCATGTGCCGGGCGTGAGTGCGTGCATGGGTGCGTGCGTGGGTGTGTG
CCTGCGTGCGTGTGTCCAAGGCTGTTATTTTCCCCTTCTAAGGTCTTCTCAACATGTCAGCACC
TGTGATCCAAGGGACAGGTGCTGGTAGGAGAGTGTGACAGTGTCTCCAGGTGGTGCTGAGTCCC
CAGCCAGAGTCCTCTCTCCTCTTCTCATAGCAAGTATGATATGGTCAGCTTGCCTCGCTGGCCA
TGAAGCTTTCTCTGATCCTTCTACCGGTGCCTCCTGTGGGGCCGGAAACTGCTGCTGCTATGCT
GAATCCGGGGAAGGAGAGCAAGCCCTGAGCAGAAAAGGCAAGGTGCCCAGTACCTTGACATCAC
ACCACACCTCTGCCTACACCAGATGCCTCTGCAGACCTTACCTTGGTCCCGCCTGTGGCAGCAT
CCTTTCATACTGTCTTGGGCCAGGGCCACAGCCGATATCTTATACGACCTGTGTTTCGGACATT
TTTTAAATCATTGTATCCAAGCATCTCAGAGACAAGTGTGCTTCTTTGCGAAAGGGTCAACTGA
ATGAATGCTTCTCCCACTCTGATCTGTTCAGCCAACAGGAGCACCCTTTTCTAATGTCTTCCAC
TCCTAACTCTTCTCCCCACCCCCCAAAAAAGGAATATTATTTGTAGCTTGCTCTGTATTTGAAT
TTTTAGCAATTTTATATTTAGATATCTTTGAAAATGTAAATGACTAATTTGGTCATTAAATCTT
GTCACATATTCAATATTAAGATACTAAAATAAAAGTCATAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_008761721 ⟹ XP_008759943

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,918,387 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCC
CGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCC
CTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCC
CCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTC
CAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAG
CTGGGTGTGTGACTTAGCTCAAAGATTAGAACGACTCCGCAAAGAGAGACAAAACCAGATCAAA
TGCAAAAATATTCAGTGGAAAGAAAGAAATTCTAAACAATCAGCCCAGGAGTTAAAGTCACTGT
TTGAAAAAAAATCCCTCAAAGAGAAACCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCG
CCTGGAACAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAG
GGTCATGTGGGTACAACTGCAACGAAGAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGG
ACAGACTGCTGCCAATGACTGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCT
CATCTGTTGGCAGTACACGAGTGAAGGACGGGAGCCAAAGCTCAATGACAACGTCAGTGCCTAC
TGCCTGCATATTGCTGAGGATGATGGGGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATG
AACCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCT
GACCTCCAAAGAGTCGCTCTTTGTTCGAATAAATGCTGCCCATGGGTTCTCCCTCATCCAGGTG
GACAACACGAAGGTCACCATGAAGGAGATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCC
AGAAAATTTCAGGCCCTCAGTACCGCCTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGGACCT
GGAGAGCACGCTGGAGAGCCAGAATGCCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTCAAGG
GCAGACGGAGTTTTCGAGGAGGATTCACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCA
GCCACCATTATAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGGTTCACAACTGACGTGCA
GTTAGGTATCTCTGGAGACAAAGTGGAGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAG
TTTTGGATTAAGCAGAAGCCCATCTCAATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCG
AGGAGAAGAGCCCCAGTCACGCGGTCTTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCA
TCTCTACTTCGAGTCCGACGCAGCTACCGTCAGTGAAATCGTGCTCAAGGTTAACTACATCCTG
GAGTCACGAGCAAGCACTGCCCGTGCTGACTATTTTGCTCAAAAACAAAGAAAACTGAACAGGC
GGACGAGCTTCAGCTTCCAGAAGGAGAAGAAATCAGGGCAGCAGTGACACTGGCCTCCAGTCTG
GTGCCACAACCCGGACTGCCTGCAAGGCCAGGTGGACCAGAGTCCTCCGGCATCCTATAGAGCC
AAGACCCGCAGACACAGGCTGCTGGGCGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGAC
TGAAGCTTGGCCATGGTTCTAAGTAGCAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCGGAGA
GCTACTCAGCCGTGCTCACTGTCTGGCAGCCCCAAGGGTGTACATAGATAGCCATGCCAGACAT
CTCCTTGCAACTTGATCAAATTTCTTAAACAAAGAACAAAGTGTACATTTCTTTTTTTCCTTTT
AATAAACTCTTTATCATGGTTGGTATGATGGACCATTCTTTGGGGTGGAGGATTGACTGTATTA
TCTTCTTAAAAATCTATTCCCATATTGAACAGGCAGATTACAAAAGCTGTGGTTGGAGCTCTCA
CAAGCAGTGTTTAGGGCTTAGCCAGTAGCATTAGCTGTGCCATTTGTTTAAATGAGTGCATTTG
CTTTGAGAATAGCATCTTACTAAAGTTAGGAATGAGGACCTAGCATGTGCCGGGCGTGAGTGCG
TGCATGGGTGCGTGCGTGGGTGTGTGCCTGCGTGCGTGTGTCCAAGGCTGTTATTTTCCCCTTC
TAAGGTCTTCTCAACATGTCAGCACCTGTGATCCAAGGGACAGGTGCTGGTAGGAGAGTGTGAC
AGTGTCTCCAGGTGGTGCTGAGTCCCCAGCCAGAGTCCTCTCTCCTCTTCTCATAGCAAGTATG
ATATGGTCAGCTTGCCTCGCTGGCCATGAAGCTTTCTCTGATCCTTCTACCGGTGCCTCCTGTG
GGGCCGGAAACTGCTGCTGCTATGCTGAATCCGGGGAAGGAGAGCAAGCCCTGAGCAGAAAAGG
CAAGGTGCCCAGTACCTTGACATCACACCACACCTCTGCCTACACCAGATGCCTCTGCAGACCT
TACCTTGGTCCCGCCTGTGGCAGCATCCTTTCATACTGTCTTGGGCCAGGGCCACAGCCGATAT
CTTATACGACCTGTGTTTCGGACATTTTTTAAATCATTGTATCCAAGCATCTCAGAGACAAGTG
TGCTTCTTTGCGAAAGGGTCAACTGAATGAATGCTTCTCCCACTCTGATCTGTTCAGCCAACAG
GAGCACCCTTTTCTAATGTCTTCCACTCCTAACTCTTCTCCCCACCCCCCAAAAAAGGAATATT
ATTTGTAGCTTGCTCTGTATTTGAATTTTTAGCAATTTTATATTTAGATATCTTTGAAAATGTA
AATGACTAATTTGGTCATTAAATCTTGTCACATATTCAATATTAAGATACTAAAATAAAAGTCA
TAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_008761722 ⟹ XP_008759944

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,918,387 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGGTAGGATTGCGGGTCCC
CGAGGACTTCGTGGGCGCAGGGTTCGGTGTAGGGGCCGGGAGGCGTAGGGGAGTCAGGACCTCC
CTCAGGGACGTGTCCTGGGCGAGGCGGCCTGTAGTGCTGGAAGCAGCTTCAGGTAAAGGTTGCC
CCAGCCGTCGCCCCCTCGCCCGCGGAACCCTCCGACCCCTCAGCACCCCGCTGTCCTCGCTGTC
CAGCGGCGCCCGTTGGGGCCGTGCTCGGTGGCCTGGGAGCATCCGTTTCCTGGCAGCCTGACAG
CTGGGTGTGTGACTTAGCCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAA
CCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGA
ATAACCCCTTTAATGAGTACTCCAAGTTTGATGGCAAGGGTCATGTGGGTACAACTGCAACGAA
GAAGATCGACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTG
ACCATGGCCAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAG
GACGGGAGCCAAAGCTCAATGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGG
GGAGGTGGACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGCTTCAGT
ACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTC
GAATAAATGCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCATGAAGGA
GATCTTACTCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAGGCCCTCAGTACCGC
CTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGGACCTGGAGAGCACGCTGGAGAGCCAGAATG
CCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTC
ACAAATTGACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTCAAAGTC
AGCATGATCCACAGACTGCGGTTCACAACTGACGTGCAGTTAGGTATCTCTGGAGACAAAGTGG
AGATAGACCCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCCCATCTC
AATCGATTGTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCACGCGGTC
TTTAAGCTCACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACGCAGCTA
CCGTCAGTGAAATCGTGCTCAAGGTTAACTACATCCTGGAGTCACGAGCAAGCACTGCCCGTGC
TGACTATTTTGCTCAAAAACAAAGAAAACTGAACAGGCGGACGAGCTTCAGCTTCCAGAAGGAG
AAGAAATCAGGGCAGCAGTGACACTGGCCTCCAGTCTGGTGCCACAACCCGGACTGCCTGCAAG
GCCAGGTGGACCAGAGTCCTCCGGCATCCTATAGAGCCAAGACCCGCAGACACAGGCTGCTGGG
CGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATTGGACTGAAGCTTGGCCATGGTTCTAAGTAG
CAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCGGAGAGCTACTCAGCCGTGCTCACTGTCTGG
CAGCCCCAAGGGTGTACATAGATAGCCATGCCAGACATCTCCTTGCAACTTGATCAAATTTCTT
AAACAAAGAACAAAGTGTACATTTCTTTTTTTCCTTTTAATAAACTCTTTATCATGGTTGGTAT
GATGGACCATTCTTTGGGGTGGAGGATTGACTGTATTATCTTCTTAAAAATCTATTCCCATATT
GAACAGGCAGATTACAAAAGCTGTGGTTGGAGCTCTCACAAGCAGTGTTTAGGGCTTAGCCAGT
AGCATTAGCTGTGCCATTTGTTTAAATGAGTGCATTTGCTTTGAGAATAGCATCTTACTAAAGT
TAGGAATGAGGACCTAGCATGTGCCGGGCGTGAGTGCGTGCATGGGTGCGTGCGTGGGTGTGTG
CCTGCGTGCGTGTGTCCAAGGCTGTTATTTTCCCCTTCTAAGGTCTTCTCAACATGTCAGCACC
TGTGATCCAAGGGACAGGTGCTGGTAGGAGAGTGTGACAGTGTCTCCAGGTGGTGCTGAGTCCC
CAGCCAGAGTCCTCTCTCCTCTTCTCATAGCAAGTATGATATGGTCAGCTTGCCTCGCTGGCCA
TGAAGCTTTCTCTGATCCTTCTACCGGTGCCTCCTGTGGGGCCGGAAACTGCTGCTGCTATGCT
GAATCCGGGGAAGGAGAGCAAGCCCTGAGCAGAAAAGGCAAGGTGCCCAGTACCTTGACATCAC
ACCACACCTCTGCCTACACCAGATGCCTCTGCAGACCTTACCTTGGTCCCGCCTGTGGCAGCAT
CCTTTCATACTGTCTTGGGCCAGGGCCACAGCCGATATCTTATACGACCTGTGTTTCGGACATT
TTTTAAATCATTGTATCCAAGCATCTCAGAGACAAGTGTGCTTCTTTGCGAAAGGGTCAACTGA
ATGAATGCTTCTCCCACTCTGATCTGTTCAGCCAACAGGAGCACCCTTTTCTAATGTCTTCCAC
TCCTAACTCTTCTCCCCACCCCCCAAAAAAGGAATATTATTTGTAGCTTGCTCTGTATTTGAAT
TTTTAGCAATTTTATATTTAGATATCTTTGAAAATGTAAATGACTAATTTGGTCATTAAATCTT
GTCACATATTCAATATTAAGATACTAAAATAAAAGTCATAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_017591654 ⟹ XP_017447143

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,844 - 17,918,387 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGCTCAAAGATTAGAACGA
CTCCGCAAAGAGAGACAAAACCAGATCAAATGCAAAAATATTCAGTGGAAAGAAAGAAATTCTA
AACAATCAGCCCAGGAGTTAAAGTCACTGTTTGAAAAAAAATCCCTCAAAGAGAAACCTCCAAG
TTCGGGCAAGCAGTCCATATTGTCTGTGCGCCTGGAACAGTGCCCTCTGCAGCTGAATAACCCC
TTTAATGAGTACTCCAAGTTTGATGGCAAGGGTCATGTGGGTACAACTGCAACGAAGAAGATCG
ACGTCTACCTCCCCCTGCACTCAAGCCAGGACAGACTGCTGCCAATGACTGTGGTGACCATGGC
CAGCGCCAGGGTGCAGGACCTCATCGGGCTCATCTGTTGGCAGTACACGAGTGAAGGACGGGAG
CCAAAGCTCAATGACAACGTCAGTGCCTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTGG
ACACGGATTTCCCACCGCTGGATTCCAATGAACCCATTCATAAGTTTGGCTTCAGTACTTTGGC
CCTGGTTGAAAAGTACTCTTCCCCTGGTCTGACCTCCAAAGAGTCGCTCTTTGTTCGAATAAAT
GCTGCCCATGGGTTCTCCCTCATCCAGGTGGACAACACGAAGGTCACCATGAAGGAGATCTTAC
TCAAGGCACTGAAACGAAGAAAAGGGTCCCAGAAAATTTCAGGCCCTCAGTACCGCCTGGAGAA
GCAGAGCGAGCCTAACATCGGTGTGGACCTGGAGAGCACGCTGGAGAGCCAGAATGCCTGGGAG
TTCTGCCTGGTTCGAGAGAACAGTTCAAGGGCAGACGGAGTTTTCGAGGAGGATTCACAAATTG
ACATTGCTACAGTGCAGGATATGCTTAGCAGCCACCATTATAAGTCATTCAAAGTCAGCATGAT
CCACAGACTGCGGTTCACAACTGACGTGCAGTTAGGTATCTCTGGAGACAAAGTGGAGATAGAC
CCTGTTACGAATCAGAAAGCCAGCACTAAGTTTTGGATTAAGCAGAAGCCCATCTCAATCGATT
GTGACCTGCTCTGTGCCTGTGACCTTGCCGAGGAGAAGAGCCCCAGTCACGCGGTCTTTAAGCT
CACGTATCTAAGCAGTCACGACTATAAGCATCTCTACTTCGAGTCCGACGCAGCTACCGTCAGT
GAAATCGTGCTCAAGGTTAACTACATCCTGGAGTCACGAGCAAGCACTGCCCGTGCTGACTATT
TTGCTCAAAAACAAAGAAAACTGAACAGGCGGACGAGCTTCAGCTTCCAGAAGGAGAAGAAATC
AGGGCAGCAGTGACACTGGCCTCCAGTCTGGTGCCACAACCCGGACTGCCTGCAAGGCCAGGTG
GACCAGAGTCCTCCGGCATCCTATAGAGCCAAGACCCGCAGACACAGGCTGCTGGGCGCGAGGG
GAAGGTTTAGAGGTAGGGGTACCATTGGACTGAAGCTTGGCCATGGTTCTAAGTAGCAATGTCC
AGGGGCCAGCCCCCTCCTGGAGGGCGGAGAGCTACTCAGCCGTGCTCACTGTCTGGCAGCCCCA
AGGGTGTACATAGATAGCCATGCCAGACATCTCCTTGCAACTTGATCAAATTTCTTAAACAAAG
AACAAAGTGTACATTTCTTTTTTTCCTTTTAATAAACTCTTTATCATGGTTGGTATGATGGACC
ATTCTTTGGGGTGGAGGATTGACTGTATTATCTTCTTAAAAATCTATTCCCATATTGAACAGGC
AGATTACAAAAGCTGTGGTTGGAGCTCTCACAAGCAGTGTTTAGGGCTTAGCCAGTAGCATTAG
CTGTGCCATTTGTTTAAATGAGTGCATTTGCTTTGAGAATAGCATCTTACTAAAGTTAGGAATG
AGGACCTAGCATGTGCCGGGCGTGAGTGCGTGCATGGGTGCGTGCGTGGGTGTGTGCCTGCGTG
CGTGTGTCCAAGGCTGTTATTTTCCCCTTCTAAGGTCTTCTCAACATGTCAGCACCTGTGATCC
AAGGGACAGGTGCTGGTAGGAGAGTGTGACAGTGTCTCCAGGTGGTGCTGAGTCCCCAGCCAGA
GTCCTCTCTCCTCTTCTCATAGCAAGTATGATATGGTCAGCTTGCCTCGCTGGCCATGAAGCTT
TCTCTGATCCTTCTACCGGTGCCTCCTGTGGGGCCGGAAACTGCTGCTGCTATGCTGAATCCGG
GGAAGGAGAGCAAGCCCTGAGCAGAAAAGGCAAGGTGCCCAGTACCTTGACATCACACCACACC
TCTGCCTACACCAGATGCCTCTGCAGACCTTACCTTGGTCCCGCCTGTGGCAGCATCCTTTCAT
ACTGTCTTGGGCCAGGGCCACAGCCGATATCTTATACGACCTGTGTTTCGGACATTTTTTAAAT
CATTGTATCCAAGCATCTCAGAGACAAGTGTGCTTCTTTGCGAAAGGGTCAACTGAATGAATGC
TTCTCCCACTCTGATCTGTTCAGCCAACAGGAGCACCCTTTTCTAATGTCTTCCACTCCTAACT
CTTCTCCCCACCCCCCAAAAAAGGAATATTATTTGTAGCTTGCTCTGTATTTGAATTTTTAGCA
ATTTTATATTTAGATATCTTTGAAAATGTAAATGACTAATTTGGTCATTAAATCTTGTCACATA
TTCAATATTAAGATACTAAAATAAAAGTCATAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_017591656 ⟹ XP_017447145

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,918,387 (+)	NCBI
Rnor_6.0	3	13,484,952 - 13,701,772 (+)	NCBI

Sequence:

show sequence

TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGC
GGCGGGGTCATGAGGGCGAGCCCGGGGCGCCAGGGCCGAGCCGGCCGCCCAGGAGTTAAAGTCA
CTGTTTGAAAAAAAATCCCTCAAAGAGAAACCTCCAAGTTCGGGCAAGCAGTCCATATTGTCTG
TGCGCCTGGAACAGTGCCCTCTGCAGCTGAATAACCCCTTTAATGAGTACTCCAAGTTTGATGG
CAAGGGTCATGTGGGTACAACTGCAACGAAGAAGATCGACGTCTACCTCCCCCTGCACTCAAGC
CAGGACAGACTGCTGCCAATGACTGTGGTGACCATGGCCAGCGCCAGGGTGCAGGACCTCATCG
GGCTCATCTGTTGGCAGTACACGAGTGAAGGACGGGAGCCAAAGCTCAATGACAACGTCAGTGC
CTACTGCCTGCATATTGCTGAGGATGATGGGGAGGTGGACACGGATTTCCCACCGCTGGATTCC
AATGAACCCATTCATAAGTTTGGCTTCAGTACTTTGGCCCTGGTTGAAAAGTACTCTTCCCCTG
GTCTGACCTCCAAAGAGTCGCTCTTTGTTCGAATAAATGCTGCCCATGGGTTCTCCCTCATCCA
GGTGGACAACACGAAGGTCACCATGAAGGAGATCTTACTCAAGGCACTGAAACGAAGAAAAGGG
TCCCAGAAAATTTCAGGCCCTCAGTACCGCCTGGAGAAGCAGAGCGAGCCTAACATCGGTGTGG
ACCTGGAGAGCACGCTGGAGAGCCAGAATGCCTGGGAGTTCTGCCTGGTTCGAGAGAACAGTTC
AAGGGCAGACGGAGTTTTCGAGGAGGATTCACAAATTGACATTGCTACAGTGCAGGATATGCTT
AGCAGCCACCATTATAAGTCATTCAAAGTCAGCATGATCCACAGACTGCGGTTCACAACTGACG
TGCAGTTAGGTATCTCTGGAGACAAAGTGGAGATAGACCCTGTTACGAATCAGAAAGCCAGCAC
TAAGTTTTGGATTAAGCAGAAGCCCATCTCAATCGATTGTGACCTGCTCTGTGCCTGTGACCTT
GCCGAGGAGAAGAGCCCCAGTCACGCGGTCTTTAAGCTCACGTATCTAAGCAGTCACGACTATA
AGCATCTCTACTTCGAGTCCGACGCAGCTACCGTCAGTGAAATCGTGCTCAAGGTTAACTACAT
CCTGGAGTCACGAGCAAGCACTGCCCGTGCTGACTATTTTGCTCAAAAACAAAGAAAACTGAAC
AGGCGGACGAGCTTCAGCTTCCAGAAGGAGAAGAAATCAGGGCAGCAGTGACACTGGCCTCCAG
TCTGGTGCCACAACCCGGACTGCCTGCAAGGCCAGGTGGACCAGAGTCCTCCGGCATCCTATAG
AGCCAAGACCCGCAGACACAGGCTGCTGGGCGCGAGGGGAAGGTTTAGAGGTAGGGGTACCATT
GGACTGAAGCTTGGCCATGGTTCTAAGTAGCAATGTCCAGGGGCCAGCCCCCTCCTGGAGGGCG
GAGAGCTACTCAGCCGTGCTCACTGTCTGGCAGCCCCAAGGGTGTACATAGATAGCCATGCCAG
ACATCTCCTTGCAACTTGATCAAATTTCTTAAACAAAGAACAAAGTGTACATTTCTTTTTTTCC
TTTTAATAAACTCTTTATCATGGTTGGTATGATGGACCATTCTTTGGGGTGGAGGATTGACTGT
ATTATCTTCTTAAAAATCTATTCCCATATTGAACAGGCAGATTACAAAAGCTGTGGTTGGAGCT
CTCACAAGCAGTGTTTAGGGCTTAGCCAGTAGCATTAGCTGTGCCATTTGTTTAAATGAGTGCA
TTTGCTTTGAGAATAGCATCTTACTAAAGTTAGGAATGAGGACCTAGCATGTGCCGGGCGTGAG
TGCGTGCATGGGTGCGTGCGTGGGTGTGTGCCTGCGTGCGTGTGTCCAAGGCTGTTATTTTCCC
CTTCTAAGGTCTTCTCAACATGTCAGCACCTGTGATCCAAGGGACAGGTGCTGGTAGGAGAGTG
TGACAGTGTCTCCAGGTGGTGCTGAGTCCCCAGCCAGAGTCCTCTCTCCTCTTCTCATAGCAAG
TATGATATGGTCAGCTTGCCTCGCTGGCCATGAAGCTTTCTCTGATCCTTCTACCGGTGCCTCC
TGTGGGGCCGGAAACTGCTGCTGCTATGCTGAATCCGGGGAAGGAGAGCAAGCCCTGAGCAGAA
AAGGCAAGGTGCCCAGTACCTTGACATCACACCACACCTCTGCCTACACCAGATGCCTCTGCAG
ACCTTACCTTGGTCCCGCCTGTGGCAGCATCCTTTCATACTGTCTTGGGCCAGGGCCACAGCCG
ATATCTTATACGACCTGTGTTTCGGACATTTTTTAAATCATTGTATCCAAGCATCTCAGAGACA
AGTGTGCTTCTTTGCGAAAGGGTCAACTGAATGAATGCTTCTCCCACTCTGATCTGTTCAGCCA
ACAGGAGCACCCTTTTCTAATGTCTTCCACTCCTAACTCTTCTCCCCACCCCCCAAAAAAGGAA
TATTATTTGTAGCTTGCTCTGTATTTGAATTTTTAGCAATTTTATATTTAGATATCTTTGAAAA
TGTAAATGACTAATTTGGTCATTAAATCTTGTCACATATTCAATATTAAGATACTAAAATAAAA
GTCATAAATACCCTCT

hide sequence

RefSeq Acc Id:

XM_039104765 ⟹ XP_038960693

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,813 - 17,917,375 (+)	NCBI

RefSeq Acc Id:

XM_039104766 ⟹ XP_038960694

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,885 - 17,917,373 (+)	NCBI

RefSeq Acc Id:

XM_039104768 ⟹ XP_038960696

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,918,387 (+)	NCBI

RefSeq Acc Id:

XM_039104769 ⟹ XP_038960697

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	3	17,715,850 - 17,849,188 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011964	(Get FASTA)	NCBI Sequence Viewer
	XP_006234011	(Get FASTA)	NCBI Sequence Viewer
	XP_006234012	(Get FASTA)	NCBI Sequence Viewer
	XP_008759943	(Get FASTA)	NCBI Sequence Viewer
	XP_008759944	(Get FASTA)	NCBI Sequence Viewer
	XP_017447143	(Get FASTA)	NCBI Sequence Viewer
	XP_017447145	(Get FASTA)	NCBI Sequence Viewer
	XP_038960693	(Get FASTA)	NCBI Sequence Viewer
	XP_038960694	(Get FASTA)	NCBI Sequence Viewer
	XP_038960696	(Get FASTA)	NCBI Sequence Viewer
	XP_038960697	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79073	(Get FASTA)	NCBI Sequence Viewer
	Q6AYF1	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011964 ⟸ NM_001011964

- UniProtKB:

Q6AYF1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGY
IYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKS
LKEKPPSSGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVYLPLHSSQDRLLP
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK
FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG
PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK
SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP
SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS
FQKEKKSGQQ

hide sequence

RefSeq Acc Id:	XP_006234011 ⟸ XM_006233949
- Peptide Label:	isoform X1
- UniProtKB:	Q6AYF1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGY IYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKS LKEKPPSSGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVYLPLHSSQDRLLP MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS FQKEKKSGQQ hide sequence

RefSeq Acc Id:	XP_006234012 ⟸ XM_006233950
- Peptide Label:	isoform X1
- UniProtKB:	Q6AYF1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGY IYAQSVDITSSWDFGIRRRSNTAQRLERLRKERQNQIKCKNIQWKERNSKQSAQELKSLFEKKS LKEKPPSSGKQSILSVRLEQCPLQLNNPFNEYSKFDGKGHVGTTATKKIDVYLPLHSSQDRLLP MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS FQKEKKSGQQ hide sequence

RefSeq Acc Id:

XP_008759943 ⟸ XM_008761721

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK
FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG
PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK
SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP
SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS
FQKEKKSGQQ

hide sequence

RefSeq Acc Id:

XP_008759944 ⟸ XM_008761722

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK
FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG
PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK
SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP
SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS
FQKEKKSGQQ

hide sequence

RefSeq Acc Id:

XP_017447143 ⟸ XM_017591654

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK
FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG
PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK
SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP
SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS
FQKEKKSGQQ

hide sequence

RefSeq Acc Id:

XP_017447145 ⟸ XM_017591656

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHK
FGFSTLALVEKYSSPGLTSKESLFVRINAAHGFSLIQVDNTKVTMKEILLKALKRRKGSQKISG
PQYRLEKQSEPNIGVDLESTLESQNAWEFCLVRENSSRADGVFEEDSQIDIATVQDMLSSHHYK
SFKVSMIHRLRFTTDVQLGISGDKVEIDPVTNQKASTKFWIKQKPISIDCDLLCACDLAEEKSP
SHAVFKLTYLSSHDYKHLYFESDAATVSEIVLKVNYILESRASTARADYFAQKQRKLNRRTSFS
FQKEKKSGQQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000023889 ⟸ ENSRNOT00000023889

RefSeq Acc Id:	XP_038960693 ⟸ XM_039104765
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038960696 ⟸ XM_039104768
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038960697 ⟸ XM_039104769
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038960694 ⟸ XM_039104766
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000078499 ⟸ ENSRNOT00000119554

RefSeq Acc Id:

ENSRNOP00000091071 ⟸ ENSRNOT00000116389

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYF1-F1-model_v2	AlphaFold	Q6AYF1	1-522	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692004

Promoter ID:

EPDNEW_R2529

Type:

initiation region

Name:

Mapkap1_1

Description:

mitogen-activated protein kinase associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	13,484,950 - 13,485,010	EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)

ACI/EurMcwi (2019)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (2020)

Visual

CSV

TAB

Printer

Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN-Lx/CubMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BUF/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

DA/OlaHsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE16/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/FarMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB10/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF10A/StmMcwi (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrcAek (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/NRrrcMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MWF/Hsd (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHR/OlalpcvMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WAG/RijCrl (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (2019)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (2020)

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Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305363	AgrOrtholog
BioCyc Gene	G2FUF-50084	BioCyc
Ensembl Genes	ENSRNOG00000017583	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000078499	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000091071	ENTREZGENE
	ENSRNOP00000091071.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000116389	ENTREZGENE
	ENSRNOT00000116389.1	UniProtKB/TrEMBL
	ENSRNOT00000119554	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.29.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7122012	IMAGE-MGC_LOAD
InterPro	CRIM_dom	UniProtKB/Swiss-Prot
	PH-like_dom_sf	UniProtKB/Swiss-Prot
	Sin1/Avo1	UniProtKB/Swiss-Prot
	Sin1_N	UniProtKB/Swiss-Prot
	Sin1_PH_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:296648	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94027	IMAGE-MGC_LOAD
NCBI Gene	296648	ENTREZGENE
PANTHER	PTHR13335	UniProtKB/Swiss-Prot
Pfam	CRIM	UniProtKB/Swiss-Prot
	SIN1	UniProtKB/Swiss-Prot
	SIN1_PH	UniProtKB/Swiss-Prot
PhenoGen	Mapkap1	PhenoGen
UniProt	A0A8I6AEY0_RAT	UniProtKB/TrEMBL
	Q6AYF1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Mapkap1	MAPK associated protein 1	LOC100912221	target of rapamycin complex 2 subunit MAPKAP1-like	Data Merged	737654	PROVISIONAL
2019-08-08	Mapkap1	MAPK associated protein 1	Mapkap1	mitogen-activated protein kinase associated protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100912221	target of rapamycin complex 2 subunit MAPKAP1-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Mapkap1	mitogen-activated protein kinase associated protein 1	Mapkap1_predicted	mitogen-activated protein kinase associated protein 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mapkap1_predicted	mitogen-activated protein kinase associated protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - PID (archival)

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RGD Manual Annotations

Imported Annotations - PID (archival)