 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
Molecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | Laplante M and Sabatini DM, Cell. 2012 Apr 13;149(2):274-93. doi: 10.1016/j.cell.2012.03.017. |
| 4. | Ma XM and Blenis J, Nat Rev Mol Cell Biol. 2009 May;10(5):307-18. Epub 2009 Apr 2. |
| 5. | MGD data from the GO Consortium |
| 6. | Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
| 7. | RGD automated data pipeline |
| 8. | RGD automated import pipeline for gene-chemical interactions |
| 9. | RGD comprehensive gene curation |
References - uncuratedGenomics
Comparative Map Data| Mapkap1 (Rattus norvegicus - Norway rat) |
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| MAPKAP1 (Homo sapiens - human) |
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| Mapkap1 (Mus musculus - house mouse) |
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| Mapkap1 (Chinchilla lanigera - long-tailed chinchilla) |
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| MAPKAP1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| MAPKAP1 (Canis lupus familiaris - dog) |
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| Mapkap1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| MAPKAP1 (Sus scrofa - pig) |
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| MAPKAP1 (Chlorocebus sabaeus - African green monkey) |
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| Mapkap1 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| D3Rat192 |
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| RH125848 |
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| RH130453 |
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| RH143519 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 42 | 57 | 41 | 19 | 41 | 8 | 11 | 74 | 35 | 41 | 11 | 8 |
| Low | 1 | ||||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001011964 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006233949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006233950 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008761720 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008761721 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008761722 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591651 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591652 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591653 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591654 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591655 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591656 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017591657 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07051480 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07051481 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07051482 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07051483 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07051484 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01020868 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01020869 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01020870 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01020871 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01020872 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC079073 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000023889 ⟹ ENSRNOP00000023889 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001011964 ⟹ NP_001011964 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGCGGCGGGGTCATGAGGGCGAGCCCGGGGChide sequence |
| RefSeq Acc Id: | XM_006233949 ⟹ XP_006234011 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_006233950 ⟹ XP_006234012 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_008761720 ⟹ XP_008759942 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCTTCATGCTTGCGAGCCTACCTTTAAACTGTTGCTGTTTCTTGGGCTTTCTTGCCATAAATAhide sequence |
| RefSeq Acc Id: | XM_008761721 ⟹ XP_008759943 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_008761722 ⟹ XP_008759944 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_017591651 ⟹ XP_017447140 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGCCTCTCTCTCTTTGTGTCTCTAACACAGCTTCTGGGTTTTCTTTGTAGGGCTTCATGCTTGChide sequence |
| RefSeq Acc Id: | XM_017591652 ⟹ XP_017447141 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_017591653 ⟹ XP_017447142 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCTTCATGCTTGCGAGCCTACCTTTAAACTGTTGCTGTTTCTTGGGCTTTCTTGCCATAAATAhide sequence |
| RefSeq Acc Id: | XM_017591654 ⟹ XP_017447143 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_017591655 ⟹ XP_017447144 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCTTCATGCTTGCGAGCCTACCTTTAAACTGTTGCTGTTTCTTGGGCTTTCTTGCCATAAATAhide sequence |
| RefSeq Acc Id: | XM_017591656 ⟹ XP_017447145 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCCGGGTCGTGGCGCTGCTCTGGGTAACAGGGTTGCTGTTGCCGGCCGGCAGCTGCGGGGAGChide sequence |
| RefSeq Acc Id: | XM_017591657 ⟹ XP_017447146 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CTGCAGGTGCTGTCGGAAACCTTGCCCTTCCTGAGGCCCACTGACACCTCCACCACTCACAAGGhide sequence |
Protein Sequences| Protein RefSeqs | NP_001011964 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006234011 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006234012 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008759942 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008759943 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008759944 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447140 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447141 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447142 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447143 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447144 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447145 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447146 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAH79073 | (Get FASTA) | NCBI Sequence Viewer |
| Q6AYF1 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001011964 ⟸ NM_001011964 |
| - UniProtKB: | Q6AYF1 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_006234011 ⟸ XM_006233949 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6AYF1 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_006234012 ⟸ XM_006233950 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6AYF1 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_008759943 ⟸ XM_008761721 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_008759944 ⟸ XM_008761722 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_008759942 ⟸ XM_008761720 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_017447141 ⟸ XM_017591652 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6AYF1 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_017447143 ⟸ XM_017591654 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_017447145 ⟸ XM_017591656 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_017447140 ⟸ XM_017591651 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | Q6AYF1 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MAFLDNPTIILAHIRQSHVTSDDTGMCEMVLIDHDVDLEKTHPPSVPGDSGSEVQGSSGETQGYhide sequence |
| RefSeq Acc Id: | XP_017447142 ⟸ XM_017591653 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_017447144 ⟸ XM_017591655 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | XP_017447146 ⟸ XM_017591657 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MTVVTMASARVQDLIGLICWQYTSEGREPKLNDNVSAYCLHIAEDDGEVDTDFPPLDSNEPIHKhide sequence |
| RefSeq Acc Id: | ENSRNOP00000023889 ⟸ ENSRNOT00000023889 |
TranscriptomePromoters| RGD ID: | 13692004 | ||||||||
| Promoter ID: | EPDNEW_R2529 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Mapkap1_1 | ||||||||
| Description: | mitogen-activated protein kinase associated protein 1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1305363 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000017583 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000023889 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000023889 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Gene3D-CATH | 2.30.29.30 | UniProtKB/Swiss-Prot |
| IMAGE_CLONE | IMAGE:7122012 | IMAGE-MGC_LOAD |
| InterPro | CRIM_dom | UniProtKB/Swiss-Prot |
| PH-like_dom_sf | UniProtKB/Swiss-Prot | |
| Sin1_N | UniProtKB/Swiss-Prot | |
| Sin1_PH_dom | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:296648 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:94027 | IMAGE-MGC_LOAD |
| NCBI Gene | 296648 | ENTREZGENE |
| Pfam | CRIM | UniProtKB/Swiss-Prot |
| SIN1 | UniProtKB/Swiss-Prot | |
| SIN1_PH | UniProtKB/Swiss-Prot | |
| PhenoGen | Mapkap1 | PhenoGen |
| UniGene | Rn.105886 | ENTREZGENE |
| UniProt | Q6AYF1 | ENTREZGENE, UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2019-08-08 | Mapkap1 | MAPK associated protein 1 | Mapkap1 | mitogen-activated protein kinase associated protein 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2005-12-06 | Mapkap1 | mitogen-activated protein kinase associated protein 1 | Mapkap1_predicted | mitogen-activated protein kinase associated protein 1 (predicted) | Symbol and Name updated | 1559027 | APPROVED |
| 2005-01-12 | Mapkap1_predicted | mitogen-activated protein kinase associated protein 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Mapkap1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1305363 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
