Entr1 (endosome associated trafficking regulator 1) - Rat Genome Database

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Gene: Entr1 (endosome associated trafficking regulator 1) Rattus norvegicus
Analyze
Symbol: Entr1
Name: endosome associated trafficking regulator 1
RGD ID: 1305930
Description: Predicted to be involved in several processes, including endocytic recycling; positive regulation of cilium assembly; and positive regulation of protein localization to cilium. Predicted to be located in endosome. Predicted to be part of retromer complex. Predicted to be active in endosome; microtubule organizing center; and midbody. Orthologous to human ENTR1 (endosome associated trafficking regulator 1); INTERACTS WITH 2,4-dinitrotoluene; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: endosome-associated-trafficking regulator 1; LOC306322; Sdccag3; serologically defined colon cancer antigen 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,599,059 - 29,605,780 (-)NCBIGRCr8
mRatBN7.239,200,967 - 9,207,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,254,476 - 12,261,203 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,837,706 - 20,844,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,093,043 - 19,099,770 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,827,498 - 3,834,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,827,498 - 3,834,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,188,726 - 9,195,447 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,554,201 - 4,557,651 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,554,201 - 4,557,651 (-)NCBI
Celera34,020,303 - 4,027,024 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IBA,ISO)
ciliary basal body  (IBA,ISO)
early endosome  (IBA,ISO)
endosome  (ISO)
midbody  (IBA,ISO)
recycling endosome  (IBA,ISO)
retromer complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:23108400   PMID:25278552   PMID:27767179  


Genomics

Comparative Map Data
Entr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,599,059 - 29,605,780 (-)NCBIGRCr8
mRatBN7.239,200,967 - 9,207,688 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,254,476 - 12,261,203 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,837,706 - 20,844,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,093,043 - 19,099,770 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,827,498 - 3,834,219 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,827,498 - 3,834,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,188,726 - 9,195,447 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,554,201 - 4,557,651 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,554,201 - 4,557,651 (-)NCBI
Celera34,020,303 - 4,027,024 (-)NCBICelera
Cytogenetic Map3p13NCBI
ENTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,401,922 - 136,410,614 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,401,922 - 136,410,614 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,296,374 - 139,305,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,416,195 - 138,424,875 (-)NCBINCBI36Build 36hg18NCBI36
Build 349136,572,213 - 136,580,758NCBI
Celera9109,811,312 - 109,819,899 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,755,705 - 108,764,420 (-)NCBIHuRef
CHM1_19139,444,578 - 139,453,258 (-)NCBICHM1_1
T2T-CHM13v2.09148,631,256 - 148,639,944 (-)NCBIT2T-CHM13v2.0
Entr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,272,810 - 26,279,352 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,272,814 - 26,279,328 (-)EnsemblGRCm39 Ensembl
GRCm38226,382,798 - 26,389,340 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,382,802 - 26,389,316 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,238,320 - 26,244,836 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,205,370 - 26,211,315 (-)NCBIMGSCv36mm8
Celera226,100,476 - 26,106,992 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.88NCBI
Entr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,322,871 - 4,330,012 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,322,002 - 4,329,479 (+)NCBIChiLan1.0ChiLan1.0
ENTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,975,489 - 2,984,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,977,824 - 2,986,732 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,474,676 - 107,483,625 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,454,597 - 136,463,414 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,454,597 - 136,463,414 (-)Ensemblpanpan1.1panPan2
ENTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,083,368 - 49,089,608 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,083,499 - 49,089,023 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,334,041 - 48,340,282 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,960,124 - 49,966,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,960,255 - 49,966,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,740,675 - 48,746,918 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,034,826 - 49,041,067 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,082,348 - 49,088,593 (+)NCBIUU_Cfam_GSD_1.0
Entr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,971,129 - 201,978,325 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366691,396,733 - 1,403,927 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ENTR1
(Sus scrofa - pig)		 No map positions available.
ENTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,791,860 - 1,800,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,792,309 - 1,801,124 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,415,482 - 3,424,504 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Entr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,562,033 - 1,568,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,562,213 - 1,568,630 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Entr1
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:106
Interacting mature miRNAs:127
Transcripts:ENSRNOT00000061669
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat

Markers in Region
RH127514  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3p13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 21 120 227 147 69 147 15 18 250 115 145 57 3
Low 21 21 27 21
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001013135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC129824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC088296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000061669   ⟹   ENSRNOP00000058381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)Ensembl
Rnor_6.0 Ensembl33,827,498 - 3,834,186 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,972 - 9,207,679 (-)Ensembl
Rnor_6.0 Ensembl33,827,502 - 3,834,210 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089705   ⟹   ENSRNOP00000068774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,967 - 9,207,655 (-)Ensembl
Rnor_6.0 Ensembl33,827,503 - 3,830,952 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102669   ⟹   ENSRNOP00000096122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,970 - 9,207,664 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105263   ⟹   ENSRNOP00000084886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,200,967 - 9,207,688 (-)Ensembl
RefSeq Acc Id: NM_001013135   ⟹   NP_001013153
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,780 (-)NCBI
mRatBN7.239,200,967 - 9,207,688 (-)NCBI
Rnor_6.033,827,498 - 3,834,219 (-)NCBI
Rnor_5.039,188,726 - 9,195,447 (-)NCBI
RGSC_v3.434,554,201 - 4,557,651 (-)RGD
Celera34,020,303 - 4,027,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233681   ⟹   XP_006233743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,753 (-)NCBI
mRatBN7.239,200,967 - 9,207,663 (-)NCBI
Rnor_6.033,827,498 - 3,834,214 (-)NCBI
Rnor_5.039,188,726 - 9,195,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233682   ⟹   XP_006233744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,751 (-)NCBI
mRatBN7.239,200,967 - 9,207,664 (-)NCBI
Rnor_6.033,827,498 - 3,834,214 (-)NCBI
Rnor_5.039,188,726 - 9,195,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233685   ⟹   XP_006233747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,750 (-)NCBI
mRatBN7.239,200,967 - 9,207,679 (-)NCBI
Rnor_6.033,827,498 - 3,834,214 (-)NCBI
Rnor_5.039,188,726 - 9,195,447 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104798   ⟹   XP_038960726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,751 (-)NCBI
mRatBN7.239,200,967 - 9,207,662 (-)NCBI
RefSeq Acc Id: XM_039104799   ⟹   XP_038960727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,487 (-)NCBI
mRatBN7.239,200,967 - 9,206,802 (-)NCBI
RefSeq Acc Id: XM_039104800   ⟹   XP_038960728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,751 (-)NCBI
mRatBN7.239,200,967 - 9,207,662 (-)NCBI
RefSeq Acc Id: XM_039104801   ⟹   XP_038960729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,753 (-)NCBI
mRatBN7.239,200,967 - 9,207,663 (-)NCBI
RefSeq Acc Id: XM_039104802   ⟹   XP_038960730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,750 (-)NCBI
mRatBN7.239,200,967 - 9,207,679 (-)NCBI
RefSeq Acc Id: XM_063283534   ⟹   XP_063139604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,599,059 - 29,605,753 (-)NCBI
RefSeq Acc Id: XM_063283535   ⟹   XP_063139605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,601,279 - 29,605,753 (-)NCBI
RefSeq Acc Id: XR_005501844
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,601,279 - 29,605,753 (-)NCBI
mRatBN7.239,203,135 - 9,207,663 (-)NCBI
RefSeq Acc Id: XR_010064607
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,601,279 - 29,605,753 (-)NCBI
RefSeq Acc Id: XR_010064608
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,601,279 - 29,605,753 (-)NCBI
RefSeq Acc Id: NP_001013153   ⟸   NM_001013135
- UniProtKB: F1LMK3 (UniProtKB/TrEMBL),   A6JTE3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233747   ⟸   XM_006233685
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JTN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233744   ⟸   XM_006233682
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AUN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233743   ⟸   XM_006233681
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2U5 (UniProtKB/TrEMBL),   A6JTE3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058381   ⟸   ENSRNOT00000061669
Ensembl Acc Id: ENSRNOP00000068774   ⟸   ENSRNOT00000089705
RefSeq Acc Id: XP_038960730   ⟸   XM_039104802
- Peptide Label: isoform X10
- UniProtKB: A0A8I6ARC0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960729   ⟸   XM_039104801
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038960728   ⟸   XM_039104800
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038960726   ⟸   XM_039104798
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960727   ⟸   XM_039104799
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000084886   ⟸   ENSRNOT00000105263
Ensembl Acc Id: ENSRNOP00000096122   ⟸   ENSRNOT00000102669
RefSeq Acc Id: XP_063139604   ⟸   XM_063283534
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063139605   ⟸   XM_063283535
- Peptide Label: isoform X9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LMK3-F1-model_v2 AlphaFold F1LMK3 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691904
Promoter ID:EPDNEW_R2429
Type:initiation region
Name:Sdccag3_1
Description:serologically defined colon cancer antigen 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.033,834,209 - 3,834,269EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305930 AgrOrtholog
BioCyc Gene G2FUF-50382 BioCyc
Ensembl Genes ENSRNOG00000018876 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061669.5 UniProtKB/TrEMBL
  ENSRNOT00000088578.2 UniProtKB/TrEMBL
  ENSRNOT00000089705.2 UniProtKB/TrEMBL
  ENSRNOT00000102669.1 UniProtKB/TrEMBL
  ENSRNOT00000105263.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7322728 IMAGE-MGC_LOAD
InterPro SDCCAG3 UniProtKB/TrEMBL
KEGG Report rno:100363321 UniProtKB/TrEMBL
  rno:306322 UniProtKB/TrEMBL
MGC_CLONE MGC:109494 IMAGE-MGC_LOAD
NCBI Gene 306322 ENTREZGENE
PANTHER ENDOSOME-ASSOCIATED-TRAFFICKING REGULATOR 1 UniProtKB/TrEMBL
  PTHR31259 UniProtKB/TrEMBL
PhenoGen Entr1 PhenoGen
RatGTEx ENSRNOG00000018876 RatGTEx
UniProt A0A0G2JTN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2U5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUN1 ENTREZGENE, UniProtKB/TrEMBL
  A6JTE3 ENTREZGENE, UniProtKB/TrEMBL
  F1LMK3 ENTREZGENE, UniProtKB/TrEMBL
  Q5M825_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-18 Entr1  endosome associated trafficking regulator 1  Sdccag3  serologically defined colon cancer antigen 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sdccag3  serologically defined colon cancer antigen 3  Sdccag3_predicted  serologically defined colon cancer antigen 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sdccag3_predicted  serologically defined colon cancer antigen 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED