Zbtb6 (zinc finger and BTB domain containing 6)

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Gene: Zbtb6 (zinc finger and BTB domain containing 6) Rattus norvegicus

Analyze

Symbol:

Zbtb6

Name:

zinc finger and BTB domain containing 6

RGD ID:

1306007

Description:

Predicted to have DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to mitochondrion and nucleoplasm. Orthologous to human ZBTB6 (zinc finger and BTB domain containing 6); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC366029; Zfp482; zinc finger and BTB domain-containing protein 6; zinc finger protein 482; Znf482

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	3	21,679,181 - 21,697,532 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,680,727 - 21,684,132 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,918,356 - 26,936,619 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,187,505 - 17,190,919 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	17,084,933 - 17,087,572 (-)	NCBI
Celera	3	19,626,273 - 19,629,687 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin M1 (ISO)

bisphenol A (EXP)

cyclosporin A (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

formaldehyde (ISO)

leflunomide (ISO)

methylmercury chloride (ISO)

phenylmercury acetate (ISO)

poly(I:C) (EXP)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

mitochondrion (IEA,ISO)

nucleoplasm (IBA,ISO)

Molecular Function

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zbtb6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	3	21,679,181 - 21,697,532 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,680,727 - 21,684,132 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,918,356 - 26,936,619 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,187,505 - 17,190,919 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	17,084,933 - 17,087,572 (-)	NCBI
Celera	3	19,626,273 - 19,629,687 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

ZBTB6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	122,908,056 - 122,913,323 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	122,908,056 - 122,913,323 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	125,670,335 - 125,676,365 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,710,150 - 124,715,430 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	122,749,888 - 122,755,163	NCBI
Celera	9	96,318,642 - 96,323,916 (-)	NCBI
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	95,285,160 - 95,290,432 (-)	NCBI		HuRef
CHM1_1	9	125,818,992 - 125,824,264 (-)	NCBI		CHM1_1

Zbtb6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,315,512 - 37,320,931 (-)	NCBI	GRCm39		mm39
GRCm38	2	37,425,500 - 37,430,919 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,425,500 - 37,443,171 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,281,020 - 37,286,439 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	2	37,248,854 - 37,252,872 (-)	NCBI			mm8
Celera	2	37,109,509 - 37,114,928 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Zbtb6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,031,584 - 5,052,526 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,031,584 - 5,052,538 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZBTB6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	122,367,795 - 122,373,101 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,370,535 - 122,371,809 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	94,034,161 - 94,056,677 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ZBTB6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	59,870,841 - 59,879,822 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	59,860,525 - 59,880,334 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Zbtb6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936487	11,394,589 - 11,401,398 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZBTB6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	263,823,857 - 263,846,856 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	263,823,854 - 263,846,908 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,291,514 - 297,311,711 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZBTB6
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	15,203,582 - 15,226,507 (+)	NCBI
ChlSab1.1 Ensembl	12	15,222,963 - 15,224,237 (+)	Ensembl

Zbtb6
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	12,018,209 - 12,021,980 (+)	NCBI

Position Markers

BE099743

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	3	21,685,422 - 21,685,574	NCBI	Rnor6.0
Rnor_5.0	3	26,924,597 - 26,924,749	UniSTS	Rnor5.0
RGSC_v3.4	3	17,192,200 - 17,192,352	UniSTS	RGSC3.4
Celera	3	19,630,968 - 19,631,120	UniSTS
Cytogenetic Map	3	q11	UniSTS
RH 3.4 Map	3	208.2	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	25786001	Rat
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	28136884	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	28500807	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	28500807	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	32972944	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	37891710	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	39773425	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	95176874	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	2631421	33477544	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	2631421	48562146	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	3285929	28136884	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	3285929	28136884	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	5654639	25105730	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	6000748	34394365	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	6000748	51687917	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	6000748	51687917	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	6000866	34394121	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	6000866	34394121	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10094081	93415837	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	10119318	79772001	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	10639528	127023997	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	13126914	36600143	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	13126914	41510346	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	29084626	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14090411	48562146	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	14090411	48562146	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	14090411	48562146	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	14090411	48562146	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	14090411	48562146	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	14090411	48562146	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	14090411	48562146	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	18023664	63023664	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	21223803	66223803	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	492
Count of miRNA genes:	246
Interacting mature miRNAs:	298
Transcripts:	ENSRNOT00000012364
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	4	28	12	18	12			74	28	39	11
Low	2	39	29	29	1	29	8	11		7	2		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07051793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01021191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000012364 ⟹ ENSRNOP00000012364

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	21,680,727 - 21,684,132 (-)	Ensembl

RefSeq Acc Id:

NM_001108953 ⟹ NP_001102423

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	21,680,727 - 21,684,141 (-)	NCBI
Rnor_5.0	3	26,918,356 - 26,936,619 (-)	NCBI
RGSC_v3.4	3	17,187,505 - 17,190,919 (-)	RGD
Celera	3	19,626,273 - 19,629,687 (-)	RGD

Sequence:

show sequence

GCGTTTTTTCCCAGGCTAAGTCCTTCTTCCGGCCTGGGCTGCCGTTGCTGCGGAAGCCTCAAAG
CCATTTTTGCGAGTCGATTGTCACCATGGCTGCTGAGTCTGAGGTTCTACACTTCCAGTTTGAA
CAGCAAGGAGATGTGGTCCTACAGAAAATGAATCTCTTGAGACAGCAGAATTTATTTTGTGATG
TATCGATTTATATTAACGATACTGAGTTCCAGGGGCACAAGGTGATTTTGGCTGCTTGCTCCAC
TTTTATGAGAGATCAGTTTTTACTCACACAGTCAAAACACATCAGAATTACCATTCTGCAGAGT
GCAGAAGTTGGCAGGAAGTTGCTGTTGTCCTGCTATACTGGAGCACTTGAAGTAAAAAGAAAAG
AGCTTTTGAAATACTTGACTGCTGCCAGTTACCTTCAGATGGTTCACATTGTGGAAAAATGCAC
AGAAGCTTTGTCAAAGTATTTGGAAATTGATCTTTCTATGAAAAATAACCAACACACTGACTTG
TGTCAATCTTCAGATACAGATGTTAAGAATGAAGAAGAAAATTCTGATAAAGACTGTGAGATCA
TTGAAATTTCAGAAGATAGTCCTGTAAACCTAGATCCTCCTGTCAAAGAGGAGGAAGGCGATGC
ATTACAATCTGCTGCAGAGACACTGACATCAGAGCGAAGGGGAGTGAAGTCACCAGAGCTCTCA
ACAGTAGATGGTGGCTTTAAAGAGAATGAAATTTGTATCCTTCATGTGGAATCCATCCATACAG
ATGATATAGAAAACGGGCAGTTTCCACAGCCCTGTACCTCATCCAACGCAGGCATGTATTTCCC
TGAAACACAACATTCAGTGATCAATTCTACAGTTGAGAACAGAGTGACAGAAGTTCCTGGAAAT
ACAAATCAAGGGTTATTTTCTGAGAATTCTGACGGAAGTCATGGTACAATAAATGAGATTCAGA
ATCTGGATGAGAATTTTTCCTTGAGGCACCAGTGCCCCCGGTGTCCCCGGGGCTTTCTTCATGT
AGAAAACTATCTGCGCCACCTTAAGATGCATAAACTGTTTTTGTGTTTGCAGTGTGGGAAAACA
TTTACACAGAAGAAAAATCTTAACCGGCACATTCGAGGACACATGGGTATACGGCCCTTTCAGT
GTACTGTGTGTCTGAAAACCTTTACTGCCAAAAGCACACTTCAGGACCACTTGAACATACACAG
TGGTGACCGGCCATATAAATGTCATTGTTGTGATATGGATTTCAAACACAAATCTGCTCTCAAA
AAGCACTTAACCTCTGTTCATGGCAGGAGCAGTGGTGAAAAACTGTCTAGGCCTGATCTCAAAT
GCCAGAATCTACTGTAATCAAATCAGTGACTTTTGAAGTGAATGGAATCACTTTGTTAGATACA
TCTGTTTATAAAAATGCAGTATTTGTAGTGTATCACCCCCTCCCCCCCAATCTGAATCATTGAT
TTTTGTTCTTTCATGTTATTCATTCTGAACTTCTAAAAATTCCAAAGTTGTGAATGGTGTGATT
AAGTTTATGAGATTCTACGTTGTCTTAAAAACACTGTGTTCTGTTCAGCAGTAATTGCAGATTC
TGATTTGTAGTTTTTAGATAAGTGATTTAATGTTGAACTATATAGAACTTTAATGAGGTAAGAT
GGCAAATAGATTTGGAAGCATAGTGTTGCACATTGCTATTATAGGACTGGCAATTTTCTTTTTA
AAATTTAACCAGTGTTCTTGAATTATAACCAGAACACCAAAATACTGTCCTAAACTAAAGAAAC
ACAATTCAGATTCACATGGGACCAGTAGAATGTTCATAGAATTGCATTACTTAAATGTCCAAAA
GAATATGTAATTAGACCCTTTTCCTGATTATGTATAATATAATTAGATTAAGAACTCTTGCCAA
TGCAAGTATTTTCTTGGCAAAGATTGGCAAGTTACTTTTCTTAAATTTCCCTCTTTCATCGAAG
ACATTATTGTACTGTTAGGGTTTTTTCTTTCATTTGTTTTGGATAACATGCACTAAAATTGACC
TCCTATGTAGAATTACATTTCTATGAATTTAATACGTATCTTACTGTCTGCAACTGGGACACAG
AATAGTTCCATCACCTTTCAAAATTCCCTTTGCTGCTTTTTTTGTAGTTCAACCCTTCTAACTC
TAATTTCTACTAAGACTTCTTCATCAGTATAATTTGTTCTAATCTGTGGTGATATAAAACTGGA
ACCTTATATTCCCTTTAGATATTTTTAACTAAACATAATGCCGTTGAGCTTGATTTATGTCATT
ACTTTTTTGTATCTCTTATTTTACTTTTGGCATGATTTGTGTAGCCCAAAGCTGGCCTCAAATT
TGCCTTGATTCTTGAGCACTGAGATTATGTCTGGGCCATTTTTTTGTTTT

hide sequence

RefSeq Acc Id:

XM_006234101 ⟹ XP_006234163

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	21,679,181 - 21,697,532 (-)	NCBI
Rnor_5.0	3	26,918,356 - 26,936,619 (-)	NCBI

Sequence:

show sequence

TTGTAAAAAGTGCAGCAGTTAAGGCCGGCAGAAAACTGAACGGCGGGAGCTAGCCAAGGCAAGG
CCTTCAGTGCCAACCGCGAGACTACTCTCAAAAAGTGAGGAAGAAAGAGCATCTCAGGATGTTC
TTCCGGGGCGTCCAGACAATCTCCGTTAAGAATAAAGCTGGTTGACTCCGGAAGCGTTTTTTCC
CAGGCTAAGTCCTTCTTCCGGCCTGGGCTGCCGTTGCTGCGGAAGCCTCAAAGCCATTTTTGCG
AGTCGATTGTCACCATGGCTGCTGAGTCTGAGGTTCTACACTTCCAGTTTGAACAGCAAGGAGA
TGTGGTCCTACAGAAAATGAATCTCTTGAGACAGCAGAATTTATTTTGTGATGTATCGATTTAT
ATTAACGATACTGAGTTCCAGGGGCACAAGGTGATTTTGGCTGCTTGCTCCACTTTTATGAGAG
ATCAGTTTTTACTCACACAGTCAAAACACATCAGAATTACCATTCTGCAGAGTGCAGAAGTTGG
CAGGAAGTTGCTGTTGTCCTGCTATACTGGAGCACTTGAAGTAAAAAGAAAAGAGCTTTTGAAA
TACTTGACTGCTGCCAGTTACCTTCAGATGGTTCACATTGTGGAAAAATGCACAGAAGCTTTGT
CAAAGTATTTGGAAATTGATCTTTCTATGAAAAATAACCAACACACTGACTTGTGTCAATCTTC
AGATACAGATGTTAAGAATGAAGAAGAAAATTCTGATAAAGACTGTGAGATCATTGAAATTTCA
GAAGATAGTCCTGTAAACCTAGATCCTCCTGTCAAAGAGGAGGAAGGCGATGCATTACAATCTG
CTGCAGAGACACTGACATCAGAGCGAAGGGGAGTGAAGTCACCAGAGCTCTCAACAGTAGATGG
TGGCTTTAAAGAGAATGAAATTTGTATCCTTCATGTGGAATCCATCCATACAGATGATATAGAA
AACGGGCAGTTTCCACAGCCCTGTACCTCATCCAACGCAGGCATGTATTTCCCTGAAACACAAC
ATTCAGTGATCAATTCTACAGTTGAGAACAGAGTGACAGAAGTTCCTGGAAATACAAATCAAGG
GTTATTTTCTGAGAATTCTGACGGAAGTCATGGTACAATAAATGAGATTCAGAATCTGGATGAG
AATTTTTCCTTGAGGCACCAGTGCCCCCGGTGTCCCCGGGGCTTTCTTCATGTAGAAAACTATC
TGCGCCACCTTAAGATGCATAAACTGTTTTTGTGTTTGCAGTGTGGGAAAACATTTACACAGAA
GAAAAATCTTAACCGGCACATTCGAGGACACATGGGTATACGGCCCTTTCAGTGTACTGTGTGT
CTGAAAACCTTTACTGCCAAAAGCACACTTCAGGACCACTTGAACATACACAGTGGTGACCGGC
CATATAAATGTCATTGTTGTGATATGGATTTCAAACACAAATCTGCTCTCAAAAAGCACTTAAC
CTCTGTTCATGGCAGGAGCAGTGGTGAAAAACTGTCTAGGCCTGATCTCAAATGCCAGAATCTA
CTGTAATCAAATCAGTGACTTTTGAAGTGAATGGAATCACTTTGTTAGATACATCTGTTTATAA
AAATGCAGTATTTGTAGTGTATCACCCCCTCCCCCCCAATCTGAATCATTGATTTTTGTTCTTT
CATGTTATTCATTCTGAACTTCTAAAAATTCCAAAGTTGTGAATGGTGTGATTAAGTTTATGAG
ATTCTACGTTGTCTTAAAAACACTGTGTTCTGTTCAGCAGTAATTGCAGATTCTGATTTGTAGT
TTTTAGATAAGTGATTTAATGTTGAACTATATAGAACTTTAATGAGGTAAGATGGCAAATAGAT
TTGGAAGCATAGTGTTGCACATTGCTATTATAGGACTGGCAATTTTCTTTTTAAAATTTAACCA
GTGTTCTTGAATTATAACCAGAACACCAAAATACTGTCCTAAACTAAAGAAACACAATTCAGAT
TCACATGGGACCAGTAGAATGTTCATAGAATTGCATTACTTAAATGTCCAAAAGAATATGTAAT
TAGACCCTTTTCCTGATTATGTATAATATAATTAGATTAAGAACTCTTGCCAATGCAAGTATTT
TCTTGGCAAAGATTGGCAAGTTACTTTTCTTAAATTTCCCTCTTTCATCGAAGACATTATTGTA
CTGTTAGGGTTTTTTCTTTCATTTGTTTTGGATAACATGCACTAAAATTGACCTCCTATGTAGA
ATTACATTTCTATGAATTTAATACGTATCTTACTGTCTGCAACTGGGACACAGAATAGTTCCAT
CACCTTTCAAAATTCCCTTTGCTGCTTTTTTTGTAGTTCAACCCTTCTAACTCTAATTTCTACT
AAGACTTCTTCATCAGTATAATTTGTTCTAATCTGTGGTGATATAAAACTGGAACCTTATATTC
CCTTTAGATATTTTTAACTAAACATAATGCCGTTGAGCTTGATTTATGTCATTACTTTTTTGTA
TCTCTTATTTTACTTTTGGCATGATTTGTGTAGCCCAAAGCTGGCCTCAAATTTGCCTTGATTC
TTGAGCACTGAGATTATGTCTGGGCCATTTTTTTGTTTTGAATTGCTTATGTATGCATTTTCTT
TTCCAGCAGTTACCAGGTGAATAGTTTAATTTTCAAAAGTTATTAGAATTAGTTATAATGTCTC
ATTTGTATGAATGCCTGTACATTCAAAACTTTTGCCCTTAATGATGAAGAGCAAAATTTACTGC
AGGGCAAATCACCTTCCCTGACCATAGGAAGAACTAACTCACTTTTGAGCTGTCCTATTTCTAT
ACATAACTCAGCTCTTTGTAGAGTTTCTACTATATTTAAGTTTCATTGACTCTTTTCTGTATTT
TAACATGTACTATACTTTGTACTATATAAGAGTTTTGTGAAAATCATGTAGGTGTTATATATAA
TTTTTGTGATACTTTTGTGGGAATAATGCTCTACATAGAATTTTTAACTCTGGGAGAGACTTTA
AAAAATTTAAGTCTCACAGTTACTTCATAACCCAAGTCACTAATTAATGACATTGAGCAGGTCA
CCTGTCCTTCAACTTTTCTTAATTTTATATAAAATAACTTTGATTTTCATAATTTGTAGAATTA
TTTCTAAGTCTAAATTTCTACAAATTTATATTCTTCATGTGAACAGAGTAGACATTTATGTCTT
TACAAACATTGCTATTTGAATACTCTCTTGGAAACAGAACTTTTTTAAGGTAAACATTTTGTTC
CACCAGATAATGGACTGATTCAGTGGCTAATTTCCTTTCCCACATGACTTAAGAATGGTCAGTT
ATAGTTGTGAACATATTTCCCTCAGAGAAACAATTTGTGACTGAAGTACTTCTCTTATTTTTGC
TTCCTGAATTGAATTTTGGAAGGGAGGGCTAGGGATGGGTGGAGAGGGTAAACTATATAGTAAA
CAATGGATTTTTTTTCTTTTAGAAAGTGGCATCTACTATATTAGTGTTTGGAACATTTTGATTG
AAGGTGTTTTAAGTTTTACTCGTGCCTTGTAAGAGTGTTGTAAAATCAGTTTGTGAGCACTTTG
AAAGTTTTGCTTGTGGGGAGGGTATTTTATAAAGTGGTTGTTATTTATACTATTTATTTCCATT
TCATGGACAGATTGGTTTCAAAACATTCCTAGGAGCTGGGCAAAGTGCACATGCCTGTAATTCC
AGCACTTGGGAGATAGAGGCAAGAAATTCAGTTCAGGGCCAGCCTTCTTTATGTATAGTTAAGT
TTGAGGCCAGCCTCATATACATTGTTTTAGGAAAAAACAACAAAAAAGTAAAACAAAAAAAAAT
TCCTGGGAGAGTATCAGTTTGCATGACATTTCTGAAAAATTCAGCGAAGTAGAATCTGTAAAGA
TAAGCAGGTATGACAAAGTAAAGGGTAACATTTATTCATTTTAGATACTTTTAGCTGTTTGTTT
ATAATATGACAGAAAAAGCAGTATATTTGGGTTGAACCTTGTATGTACTGCATTGATATGTGTA
AAAGATCTTGAGAAGGTATTGTTACTTTGTTGCAGAGAGAATCCTTTGCTCTTTTCATTGGATG
TAATTATGAGTTAATGATGAAACAGTAAACTGGAGGTGAGAATGGAGAA

hide sequence

RefSeq Acc Id:

XM_006234102 ⟹ XP_006234164

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	21,679,181 - 21,684,055 (-)	NCBI
Rnor_5.0	3	26,918,356 - 26,936,619 (-)	NCBI

Sequence:

show sequence

GAAAGTGACGGAGACATGCCGGGGGTTGAGGCTGAAGGACGACGCTGCGTGGGAGTACACCCCG
CTGTGGCCTCAGCTCTAGCCTGGCGCCGCACCCGCCTGGCCGGTCCGGCCGGGACTCCGGAAGG
CTCGGCGTGGGAACCGTGGTCCTCATTGGAGGGAGTTGGCAGGCAGGCGGTCTAGATTCCCGTC
AGCTCCTCCTGCTGTGTGGGCCGCTTTGCCCACTGGGTGAACACAGAATCAGGAGGAAAATTAT
TCCCTGGGAGAGGAGGAGTCACGTTAGTCTCTGTTTTGGGCTCAACGGAGCTAACGGAGTAGGG
AAATGGAGCTGGAAGCGTGAATGTAATAGATAGGCAAATGGGTGTTCCCGTGTTTTATCTGTAC
AATGTTGAGCAATTTAACATTAAGGAGCTGGGTGTATGAAAAACGGACCAAGATCAATCTATAA
AAGATTGTCACCATGGCTGCTGAGTCTGAGGTTCTACACTTCCAGTTTGAACAGCAAGGAGATG
TGGTCCTACAGAAAATGAATCTCTTGAGACAGCAGAATTTATTTTGTGATGTATCGATTTATAT
TAACGATACTGAGTTCCAGGGGCACAAGGTGATTTTGGCTGCTTGCTCCACTTTTATGAGAGAT
CAGTTTTTACTCACACAGTCAAAACACATCAGAATTACCATTCTGCAGAGTGCAGAAGTTGGCA
GGAAGTTGCTGTTGTCCTGCTATACTGGAGCACTTGAAGTAAAAAGAAAAGAGCTTTTGAAATA
CTTGACTGCTGCCAGTTACCTTCAGATGGTTCACATTGTGGAAAAATGCACAGAAGCTTTGTCA
AAGTATTTGGAAATTGATCTTTCTATGAAAAATAACCAACACACTGACTTGTGTCAATCTTCAG
ATACAGATGTTAAGAATGAAGAAGAAAATTCTGATAAAGACTGTGAGATCATTGAAATTTCAGA
AGATAGTCCTGTAAACCTAGATCCTCCTGTCAAAGAGGAGGAAGGCGATGCATTACAATCTGCT
GCAGAGACACTGACATCAGAGCGAAGGGGAGTGAAGTCACCAGAGCTCTCAACAGTAGATGGTG
GCTTTAAAGAGAATGAAATTTGTATCCTTCATGTGGAATCCATCCATACAGATGATATAGAAAA
CGGGCAGTTTCCACAGCCCTGTACCTCATCCAACGCAGGCATGTATTTCCCTGAAACACAACAT
TCAGTGATCAATTCTACAGTTGAGAACAGAGTGACAGAAGTTCCTGGAAATACAAATCAAGGGT
TATTTTCTGAGAATTCTGACGGAAGTCATGGTACAATAAATGAGATTCAGAATCTGGATGAGAA
TTTTTCCTTGAGGCACCAGTGCCCCCGGTGTCCCCGGGGCTTTCTTCATGTAGAAAACTATCTG
CGCCACCTTAAGATGCATAAACTGTTTTTGTGTTTGCAGTGTGGGAAAACATTTACACAGAAGA
AAAATCTTAACCGGCACATTCGAGGACACATGGGTATACGGCCCTTTCAGTGTACTGTGTGTCT
GAAAACCTTTACTGCCAAAAGCACACTTCAGGACCACTTGAACATACACAGTGGTGACCGGCCA
TATAAATGTCATTGTTGTGATATGGATTTCAAACACAAATCTGCTCTCAAAAAGCACTTAACCT
CTGTTCATGGCAGGAGCAGTGGTGAAAAACTGTCTAGGCCTGATCTCAAATGCCAGAATCTACT
GTAATCAAATCAGTGACTTTTGAAGTGAATGGAATCACTTTGTTAGATACATCTGTTTATAAAA
ATGCAGTATTTGTAGTGTATCACCCCCTCCCCCCCAATCTGAATCATTGATTTTTGTTCTTTCA
TGTTATTCATTCTGAACTTCTAAAAATTCCAAAGTTGTGAATGGTGTGATTAAGTTTATGAGAT
TCTACGTTGTCTTAAAAACACTGTGTTCTGTTCAGCAGTAATTGCAGATTCTGATTTGTAGTTT
TTAGATAAGTGATTTAATGTTGAACTATATAGAACTTTAATGAGGTAAGATGGCAAATAGATTT
GGAAGCATAGTGTTGCACATTGCTATTATAGGACTGGCAATTTTCTTTTTAAAATTTAACCAGT
GTTCTTGAATTATAACCAGAACACCAAAATACTGTCCTAAACTAAAGAAACACAATTCAGATTC
ACATGGGACCAGTAGAATGTTCATAGAATTGCATTACTTAAATGTCCAAAAGAATATGTAATTA
GACCCTTTTCCTGATTATGTATAATATAATTAGATTAAGAACTCTTGCCAATGCAAGTATTTTC
TTGGCAAAGATTGGCAAGTTACTTTTCTTAAATTTCCCTCTTTCATCGAAGACATTATTGTACT
GTTAGGGTTTTTTCTTTCATTTGTTTTGGATAACATGCACTAAAATTGACCTCCTATGTAGAAT
TACATTTCTATGAATTTAATACGTATCTTACTGTCTGCAACTGGGACACAGAATAGTTCCATCA
CCTTTCAAAATTCCCTTTGCTGCTTTTTTTGTAGTTCAACCCTTCTAACTCTAATTTCTACTAA
GACTTCTTCATCAGTATAATTTGTTCTAATCTGTGGTGATATAAAACTGGAACCTTATATTCCC
TTTAGATATTTTTAACTAAACATAATGCCGTTGAGCTTGATTTATGTCATTACTTTTTTGTATC
TCTTATTTTACTTTTGGCATGATTTGTGTAGCCCAAAGCTGGCCTCAAATTTGCCTTGATTCTT
GAGCACTGAGATTATGTCTGGGCCATTTTTTTGTTTTGAATTGCTTATGTATGCATTTTCTTTT
CCAGCAGTTACCAGGTGAATAGTTTAATTTTCAAAAGTTATTAGAATTAGTTATAATGTCTCAT
TTGTATGAATGCCTGTACATTCAAAACTTTTGCCCTTAATGATGAAGAGCAAAATTTACTGCAG
GGCAAATCACCTTCCCTGACCATAGGAAGAACTAACTCACTTTTGAGCTGTCCTATTTCTATAC
ATAACTCAGCTCTTTGTAGAGTTTCTACTATATTTAAGTTTCATTGACTCTTTTCTGTATTTTA
ACATGTACTATACTTTGTACTATATAAGAGTTTTGTGAAAATCATGTAGGTGTTATATATAATT
TTTGTGATACTTTTGTGGGAATAATGCTCTACATAGAATTTTTAACTCTGGGAGAGACTTTAAA
AAATTTAAGTCTCACAGTTACTTCATAACCCAAGTCACTAATTAATGACATTGAGCAGGTCACC
TGTCCTTCAACTTTTCTTAATTTTATATAAAATAACTTTGATTTTCATAATTTGTAGAATTATT
TCTAAGTCTAAATTTCTACAAATTTATATTCTTCATGTGAACAGAGTAGACATTTATGTCTTTA
CAAACATTGCTATTTGAATACTCTCTTGGAAACAGAACTTTTTTAAGGTAAACATTTTGTTCCA
CCAGATAATGGACTGATTCAGTGGCTAATTTCCTTTCCCACATGACTTAAGAATGGTCAGTTAT
AGTTGTGAACATATTTCCCTCAGAGAAACAATTTGTGACTGAAGTACTTCTCTTATTTTTGCTT
CCTGAATTGAATTTTGGAAGGGAGGGCTAGGGATGGGTGGAGAGGGTAAACTATATAGTAAACA
ATGGATTTTTTTTCTTTTAGAAAGTGGCATCTACTATATTAGTGTTTGGAACATTTTGATTGAA
GGTGTTTTAAGTTTTACTCGTGCCTTGTAAGAGTGTTGTAAAATCAGTTTGTGAGCACTTTGAA
AGTTTTGCTTGTGGGGAGGGTATTTTATAAAGTGGTTGTTATTTATACTATTTATTTCCATTTC
ATGGACAGATTGGTTTCAAAACATTCCTAGGAGCTGGGCAAAGTGCACATGCCTGTAATTCCAG
CACTTGGGAGATAGAGGCAAGAAATTCAGTTCAGGGCCAGCCTTCTTTATGTATAGTTAAGTTT
GAGGCCAGCCTCATATACATTGTTTTAGGAAAAAACAACAAAAAAGTAAAACAAAAAAAAATTC
CTGGGAGAGTATCAGTTTGCATGACATTTCTGAAAAATTCAGCGAAGTAGAATCTGTAAAGATA
AGCAGGTATGACAAAGTAAAGGGTAACATTTATTCATTTTAGATACTTTTAGCTGTTTGTTTAT
AATATGACAGAAAAAGCAGTATATTTGGGTTGAACCTTGTATGTACTGCATTGATATGTGTAAA
AGATCTTGAGAAGGTATTGTTACTTTGTTGCAGAGAGAATCCTTTGCTCTTTTCATTGGATGTA
ATTATGAGTTAATGATGAAACAGTAAACTGGAGGTGAGAATGGAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102423	(Get FASTA)	NCBI Sequence Viewer
	XP_006234163	(Get FASTA)	NCBI Sequence Viewer
	XP_006234164	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00529	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001102423 ⟸ NM_001108953

- UniProtKB:

D3ZBL2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAESEVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLL
TQSKHIRITILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLE
IDLSMKNNQHTDLCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDPPVKEEEGDALQSAAETL
TSERRGVKSPELSTVDGGFKENEICILHVESIHTDDIENGQFPQPCTSSNAGMYFPETQHSVIN
STVENRVTEVPGNTNQGLFSENSDGSHGTINEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLK
MHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCH
CCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKCQNLL

hide sequence

RefSeq Acc Id:	XP_006234163 ⟸ XM_006234101
- Peptide Label:	isoform X1
- UniProtKB:	D3ZBL2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAESEVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLL TQSKHIRITILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLE IDLSMKNNQHTDLCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDPPVKEEEGDALQSAAETL TSERRGVKSPELSTVDGGFKENEICILHVESIHTDDIENGQFPQPCTSSNAGMYFPETQHSVIN STVENRVTEVPGNTNQGLFSENSDGSHGTINEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLK MHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCH CCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKCQNLL hide sequence

RefSeq Acc Id:	XP_006234164 ⟸ XM_006234102
- Peptide Label:	isoform X1
- UniProtKB:	D3ZBL2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAESEVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLL TQSKHIRITILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLE IDLSMKNNQHTDLCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDPPVKEEEGDALQSAAETL TSERRGVKSPELSTVDGGFKENEICILHVESIHTDDIENGQFPQPCTSSNAGMYFPETQHSVIN STVENRVTEVPGNTNQGLFSENSDGSHGTINEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLK MHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCH CCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKCQNLL hide sequence

RefSeq Acc Id:

ENSRNOP00000012364 ⟸ ENSRNOT00000012364

Protein Domains

BTB C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692046

Promoter ID:

EPDNEW_R2571

Type:

initiation region

Name:

Zbtb6_1

Description:

zinc finger and BTB domain containing 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	21,684,116 - 21,684,176	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306007	AgrOrtholog
Ensembl Genes	ENSRNOG00000009340	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000012364	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000012364	ENTREZGENE, UniProtKB/TrEMBL
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:366029	UniProtKB/TrEMBL
NCBI Gene	366029	ENTREZGENE
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zbtb6	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	D3ZBL2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zbtb6	zinc finger and BTB domain containing 6	Zfp482_predicted	zinc finger protein 482 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Zfp482_predicted	zinc finger protein 482 (predicted)	Znf482_predicted		Symbol updated	1299863	APPROVED
2005-01-12	Znf482_predicted	zinc finger protein 482 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)