Brd3os (BRD3 opposite strand) - Rat Genome Database

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Gene: Brd3os (BRD3 opposite strand) Rattus norvegicus
Analyze
Symbol: Brd3os
Name: BRD3 opposite strand
RGD ID: 6492996
Description: INTERACTS WITH acrylamide (ortholog); all-trans-retinoic acid (ortholog); aristolochic acid A (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100911432; putative uncharacterized protein BRD3OS; uncharacterized LOC100911432
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8331,168,289 - 31,169,920 (+)NCBIGRCr8
mRatBN7.2310,770,229 - 10,771,860 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx313,837,606 - 13,839,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0322,423,022 - 22,424,653 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,678,305 - 20,679,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,991,840 - 5,993,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0311,352,820 - 11,354,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera35,564,368 - 5,569,401 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Brd3os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8331,168,289 - 31,169,920 (+)NCBIGRCr8
mRatBN7.2310,770,229 - 10,771,860 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx313,837,606 - 13,839,237 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0322,423,022 - 22,424,653 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,678,305 - 20,679,936 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.035,991,840 - 5,993,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0311,352,820 - 11,354,861 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera35,564,368 - 5,569,401 (+)NCBICelera
Cytogenetic Map3p12NCBI
BRD3OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389134,025,481 - 134,031,587 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9134,025,481 - 134,034,666 (+)EnsemblGRCh38hg38GRCh38
GRCh379136,890,603 - 136,896,709 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,884,078 - 135,884,614 (+)NCBINCBI36Build 36hg18NCBI36
Celera9107,438,790 - 107,444,948 (+)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9106,388,380 - 106,394,537 (+)NCBIHuRef
CHM1_19137,039,003 - 137,045,160 (+)NCBICHM1_1
T2T-CHM13v2.09146,241,417 - 146,247,523 (+)NCBIT2T-CHM13v2.0
Brd3os
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39227,332,486 - 27,334,233 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl227,332,336 - 27,334,233 (+)EnsemblGRCm39 Ensembl
GRCm38227,442,436 - 27,444,221 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl227,442,324 - 27,444,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv37227,297,844 - 27,298,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36227,297,842 - 27,299,773 (-)NCBIMGSCv36mm8
Celera227,144,854 - 27,145,634 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.38NCBI
BRD3OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2115,325,346 - 5,330,435 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan195,330,038 - 5,332,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09105,146,341 - 105,151,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19133,754,181 - 133,756,889 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9133,755,536 - 133,755,790 (+)Ensemblpanpan1.1panPan2
BRD3OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1950,284,030 - 50,288,592 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,564,467 - 49,567,070 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0951,157,719 - 51,160,322 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1949,918,661 - 49,921,260 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0950,261,583 - 50,264,185 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0950,339,680 - 50,342,265 (+)NCBIUU_Cfam_GSD_1.0
Brd3os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947200,348,859 - 200,349,660 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366693,025,539 - 3,025,793 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
BRD3OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,115,658 - 4,117,756 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666058976,254 - 981,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Brd3os
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001400001   ⟹   NP_001386930
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8331,168,289 - 31,169,920 (+)NCBI
mRatBN7.2310,770,229 - 10,771,860 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386930 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001386930   ⟸   NM_001400001


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50300 BioCyc
NCBI Gene LOC100911432 ENTREZGENE
PhenoGen Brd3os PhenoGen
RNAcentral URS0000CCFF58 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Brd3os  BRD3 opposite strand  LOC100911432  uncharacterized LOC100911432  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100911432  uncharacterized LOC100911432      Symbol and Name status set to provisional 70820 PROVISIONAL