Nup188 (nucleoporin 188) - Rat Genome Database

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Gene: Nup188 (nucleoporin 188) Rattus norvegicus
Analyze
Symbol: Nup188
Name: nucleoporin 188
RGD ID: 1306022
Description: Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore inner ring. Orthologous to human NUP188 (nucleoporin 188); PARTICIPATES IN RNA transport pathway; INTERACTS WITH 2,4-dinitrotoluene; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100911302; LOC366016; nucleoporin NUP188; nucleoporin NUP188 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,559,917 - 13,616,313 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl313,559,990 - 13,616,307 (+)Ensembl
Rnor_6.038,852,271 - 8,908,608 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,873,933 - 8,908,438 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,205,251 - 14,261,382 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,331,812 - 9,388,204 (+)NCBIRGSC3.4rn4RGSC3.4
Celera38,326,493 - 8,382,816 (+)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:26878725  


Genomics

Comparative Map Data
Nup188
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2313,559,917 - 13,616,313 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl313,559,990 - 13,616,307 (+)Ensembl
Rnor_6.038,852,271 - 8,908,608 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,873,933 - 8,908,438 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,205,251 - 14,261,382 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,331,812 - 9,388,204 (+)NCBIRGSC3.4rn4RGSC3.4
Celera38,326,493 - 8,382,816 (+)NCBICelera
Cytogenetic Map3p12NCBI
NUP188
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,947,699 - 129,007,096 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl9128,947,699 - 129,007,096 (+)EnsemblGRCh38hg38GRCh38
GRCh379131,709,978 - 131,769,375 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,749,798 - 130,809,195 (+)NCBINCBI36hg18NCBI36
Build 349128,789,563 - 128,848,928NCBI
Celera9102,361,838 - 102,421,686 (+)NCBI
Cytogenetic Map9q34.11NCBI
HuRef9101,317,691 - 101,376,696 (+)NCBIHuRef
CHM1_19131,861,021 - 131,920,403 (+)NCBICHM1_1
T2T-CHM13v2.09141,151,108 - 141,210,530 (+)NCBI
Nup188
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39230,176,400 - 30,234,278 (+)NCBIGRCm39mm39
GRCm39 Ensembl230,176,409 - 30,234,278 (+)Ensembl
GRCm38230,286,407 - 30,344,266 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,286,397 - 30,344,266 (+)EnsemblGRCm38mm10GRCm38
MGSCv37230,141,953 - 30,199,782 (+)NCBIGRCm37mm9NCBIm37
MGSCv36230,108,442 - 30,166,271 (+)NCBImm8
Celera229,991,190 - 30,049,297 (+)NCBICelera
Cytogenetic Map2BNCBI
Nup188
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,312,998 - 1,369,513 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,312,998 - 1,369,513 (+)NCBIChiLan1.0ChiLan1.0
NUP188
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19128,733,749 - 128,791,252 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,733,780 - 128,791,252 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09100,069,656 - 100,130,521 (+)NCBIMhudiblu_PPA_v0panPan3
NUP188
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,657,520 - 54,712,900 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,657,682 - 54,712,827 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha953,853,072 - 53,908,426 (-)NCBI
ROS_Cfam_1.0955,578,563 - 55,633,941 (-)NCBI
ROS_Cfam_1.0 Ensembl955,578,567 - 55,633,921 (-)Ensembl
UMICH_Zoey_3.1954,340,129 - 54,395,076 (-)NCBI
UNSW_CanFamBas_1.0954,652,331 - 54,707,442 (-)NCBI
UU_Cfam_GSD_1.0954,745,638 - 54,800,996 (-)NCBI
Nup188
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,639,939 - 196,694,386 (+)NCBI
SpeTri2.0NW_00493648716,408,523 - 16,462,916 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP188
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,259,519 - 269,312,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,259,496 - 269,312,872 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,275,625 - 303,328,996 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP188
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,150,603 - 9,213,512 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl129,151,005 - 9,208,452 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666096299,833 - 407,072 (+)NCBIVero_WHO_p1.0
Nup188
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,111,621 - 6,118,084 (-)EnsemblHetGla_female_1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247606,061,130 - 6,106,853 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247606,061,130 - 6,120,597 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH129640  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,616,073 - 13,616,256 (+)MAPPERmRatBN7.2
Rnor_6.038,908,369 - 8,908,551NCBIRnor6.0
Rnor_5.0314,261,143 - 14,261,325UniSTSRnor5.0
RGSC_v3.439,387,965 - 9,388,147UniSTSRGSC3.4
Celera38,382,577 - 8,382,759UniSTS
RH 3.4 Map351.31UniSTS
Cytogenetic Map3p12UniSTS
RH134009  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,616,943 - 13,617,144 (+)MAPPERmRatBN7.2
Rnor_6.038,909,239 - 8,909,439NCBIRnor6.0
Rnor_5.0314,262,013 - 14,262,213UniSTSRnor5.0
RGSC_v3.439,388,835 - 9,389,035UniSTSRGSC3.4
Celera38,383,447 - 8,383,647UniSTS
Cytogenetic Map3p12UniSTS
MARC_17455-17456:1028295191:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,590,331 - 13,591,009 (+)MAPPERmRatBN7.2
Rnor_6.038,882,657 - 8,883,334NCBIRnor6.0
Rnor_5.0314,235,607 - 14,236,284UniSTSRnor5.0
RGSC_v3.439,362,143 - 9,362,820UniSTSRGSC3.4
Celera38,356,878 - 8,357,555UniSTS
Cytogenetic Map3p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)31077870450302886Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1558657Cm43Cardiac mass QTL 436.60.0000000293heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:67
Interacting mature miRNAs:79
Transcripts:ENSRNOT00000030996
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 38 22 19 22 63 29 41 11
Low 15 19 19 19 8 11 11 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030996   ⟹   ENSRNOP00000032298
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,559,990 - 13,616,307 (+)Ensembl
Rnor_6.0 Ensembl38,873,933 - 8,908,438 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099170   ⟹   ENSRNOP00000084918
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,559,990 - 13,616,304 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102741   ⟹   ENSRNOP00000077884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,559,990 - 13,577,592 (+)Ensembl
RefSeq Acc Id: XM_006233905   ⟹   XP_006233967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2313,559,917 - 13,616,313 (+)NCBI
Rnor_6.038,852,271 - 8,908,608 (+)NCBI
Rnor_5.0314,205,251 - 14,261,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233906   ⟹   XP_006233968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2313,564,593 - 13,616,313 (+)NCBI
Rnor_6.038,856,428 - 8,908,608 (+)NCBI
Rnor_5.0314,205,251 - 14,261,382 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106780   ⟹   XP_038962708
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2313,559,917 - 13,610,198 (+)NCBI
RefSeq Acc Id: XM_345335   ⟹   XP_345336
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2313,559,917 - 13,616,313 (+)NCBI
Rnor_6.038,852,271 - 8,908,608 (+)NCBI
Rnor_5.0314,205,251 - 14,261,382 (+)NCBI
RGSC_v3.439,331,812 - 9,388,204 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_006233967 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962708 (Get FASTA)   NCBI Sequence Viewer  
  XP_345336 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86451 (Get FASTA)   NCBI Sequence Viewer  
  EDL93327 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_345336   ⟸   XM_345335
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006233967   ⟸   XM_006233905
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233968   ⟸   XM_006233906
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000032298   ⟸   ENSRNOT00000030996
RefSeq Acc Id: XP_038962708   ⟸   XM_039106780
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000077884   ⟸   ENSRNOT00000102741
RefSeq Acc Id: ENSRNOP00000084918   ⟸   ENSRNOT00000099170

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRC6-F1-model_v2 AlphaFold F1LRC6 1-1541 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
3 14236312 14236313 T C snv BN/SsNSlc (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306022 AgrOrtholog
BioCyc Gene G2FUF-50221 BioCyc
Ensembl Genes ENSRNOG00000025185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000032298 ENTREZGENE
  ENSRNOP00000032298.6 UniProtKB/TrEMBL
  ENSRNOP00000077884.1 UniProtKB/TrEMBL
  ENSRNOP00000084918 ENTREZGENE
  ENSRNOP00000084918.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030996 ENTREZGENE
  ENSRNOT00000030996.7 UniProtKB/TrEMBL
  ENSRNOT00000099170 ENTREZGENE
  ENSRNOT00000099170.1 UniProtKB/TrEMBL
  ENSRNOT00000102741.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7303973 IMAGE-MGC_LOAD
InterPro ARM-type_fold UniProtKB/TrEMBL
  Nucleoporin_Nup188 UniProtKB/TrEMBL
  Nup188 UniProtKB/TrEMBL
MGC_CLONE MGC:106006 IMAGE-MGC_LOAD
NCBI Gene 366016 ENTREZGENE
PANTHER PTHR31431 UniProtKB/TrEMBL
Pfam Nup188 UniProtKB/TrEMBL
PhenoGen Nup188 PhenoGen
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8I5Y6G4_RAT UniProtKB/TrEMBL
  A0A8I6GC98_RAT UniProtKB/TrEMBL
  F1LRC6_RAT UniProtKB/TrEMBL
  Q5RJY5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nup188  nucleoporin 188  LOC100911302  nucleoporin NUP188 homolog  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100911302  nucleoporin NUP188 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Nup188  nucleoporin 188  Nup188_predicted  nucleoporin 188 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Nup188_predicted  nucleoporin 188 (predicted)      Symbol and Name status set to approved 70820 APPROVED