Camsap1 (calmodulin regulated spectrin-associated protein 1) - Rat Genome Database

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Gene: Camsap1 (calmodulin regulated spectrin-associated protein 1) Rattus norvegicus
Analyze
Symbol: Camsap1
Name: calmodulin regulated spectrin-associated protein 1
RGD ID: 1565022
Description: Enables calmodulin binding activity and spectrin binding activity. Involved in neuron projection development. Predicted to be located in microtubule. Predicted to colocalize with microtubule minus-end. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Orthologous to human CAMSAP1 (calmodulin regulated spectrin associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; allethrin; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calmodulin-regulated spectrin-associated protein 1; LOC296580; RGD1565022; similar to calmodulin regulated spectrin-associated protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,144,318 - 29,206,382 (-)NCBIGRCr8
mRatBN7.238,746,176 - 8,806,067 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,746,176 - 8,806,072 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,800,468 - 11,860,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,383,682 - 20,443,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,638,999 - 18,698,877 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,373,971 - 3,434,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,373,971 - 3,434,027 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.038,736,053 - 8,796,109 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,098,538 - 4,159,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,569,327 - 3,629,181 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
microtubule  (IEA,ISO,ISS)
microtubule minus-end  (IBA,IEA,ISO,ISS)

Molecular Function
calmodulin binding  (IDA,IEA)
microtubule binding  (IEA,ISO,ISS)
microtubule minus-end binding  (IBA,IEA,ISO,ISS)
protein binding  (ISO)
spectrin binding  (IDA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. The CKK domain (DUF1781) binds microtubules and defines the CAMSAP/ssp4 family of animal proteins. Baines AJ, etal., Mol Biol Evol. 2009 Sep;26(9):2005-14. doi: 10.1093/molbev/msp115. Epub 2009 Jun 9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A conserved sequence in calmodulin regulated spectrin-associated protein 1 links its interaction with spectrin and calmodulin to neurite outgrowth. King MD, etal., J Neurochem. 2014 Feb;128(3):391-402. doi: 10.1111/jnc.12462. Epub 2013 Oct 24.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21834987   PMID:24486153   PMID:24706919  


Genomics

Comparative Map Data
Camsap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,144,318 - 29,206,382 (-)NCBIGRCr8
mRatBN7.238,746,176 - 8,806,067 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,746,176 - 8,806,072 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,800,468 - 11,860,341 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0320,383,682 - 20,443,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0318,638,999 - 18,698,877 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.033,373,971 - 3,434,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl33,373,971 - 3,434,027 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.038,736,053 - 8,796,109 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,098,538 - 4,159,591 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera33,569,327 - 3,629,181 (-)NCBICelera
Cytogenetic Map3p13NCBI
CAMSAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389135,808,487 - 135,907,546 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9135,808,487 - 135,907,546 (-)EnsemblGRCh38hg38GRCh38
GRCh379138,700,333 - 138,799,392 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369137,841,248 - 137,914,570 (-)NCBINCBI36Build 36hg18NCBI36
Celera9109,218,269 - 109,316,951 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9108,162,072 - 108,261,017 (-)NCBIHuRef
CHM1_19138,848,836 - 138,947,490 (-)NCBICHM1_1
T2T-CHM13v2.09148,035,587 - 148,134,968 (-)NCBIT2T-CHM13v2.0
Camsap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,816,850 - 25,873,574 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,816,850 - 25,873,294 (-)EnsemblGRCm39 Ensembl
GRCm38225,926,838 - 25,983,562 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,926,838 - 25,983,282 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,782,358 - 25,838,802 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,748,973 - 25,806,035 (-)NCBIMGSCv36mm8
Celera225,649,057 - 25,705,208 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.29NCBI
Camsap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,667,292 - 4,705,910 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,649,816 - 4,704,282 (+)NCBIChiLan1.0ChiLan1.0
CAMSAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,480,114 - 3,577,135 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan193,482,325 - 3,580,555 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09106,881,023 - 106,979,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19135,866,980 - 135,939,757 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9135,866,980 - 135,944,911 (-)Ensemblpanpan1.1panPan2
CAMSAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,458,701 - 49,523,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,458,694 - 49,521,332 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,711,241 - 48,775,615 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,337,967 - 50,402,417 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,337,511 - 50,401,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,118,155 - 49,182,479 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,412,259 - 49,476,607 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,460,426 - 49,524,786 (+)NCBIUU_Cfam_GSD_1.0
Camsap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947201,543,182 - 201,604,114 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,770,870 - 1,831,930 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,785,229 - 1,831,876 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAMSAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21308,851,713 - 308,883,589 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAMSAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1122,298,341 - 2,395,392 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl122,298,666 - 2,396,503 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660582,769,476 - 2,907,318 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Camsap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,179,756 - 1,267,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,220,036 - 1,267,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Camsap1
166 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:639
Count of miRNA genes:281
Interacting mature miRNAs:357
Transcripts:ENSRNOT00000024163
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 26 27 12 17 12 5 8 74 22 41 11 5
Low 3 17 30 29 2 29 3 3 13 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001168549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000024163   ⟹   ENSRNOP00000024163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,746,176 - 8,806,072 (-)Ensembl
Rnor_6.0 Ensembl33,373,971 - 3,434,027 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078020   ⟹   ENSRNOP00000073547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,746,176 - 8,805,146 (-)Ensembl
Rnor_6.0 Ensembl33,375,247 - 3,433,148 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000099628   ⟹   ENSRNOP00000081912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,746,176 - 8,806,072 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101799   ⟹   ENSRNOP00000088653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,746,176 - 8,806,072 (-)Ensembl
RefSeq Acc Id: NM_001168549   ⟹   NP_001162021
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,204,184 (-)NCBI
mRatBN7.238,746,176 - 8,806,045 (-)NCBI
Rnor_6.033,373,971 - 3,434,027 (-)NCBI
Rnor_5.038,736,053 - 8,796,109 (-)NCBI
RGSC_v3.434,098,538 - 4,159,591 (-)RGD
Celera33,569,327 - 3,629,181 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415687   ⟹   NP_001402616
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,204,184 (-)NCBI
mRatBN7.238,746,176 - 8,806,045 (-)NCBI
RefSeq Acc Id: XM_006233672   ⟹   XP_006233734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,206,382 (-)NCBI
mRatBN7.238,746,176 - 8,806,067 (-)NCBI
Rnor_6.033,373,971 - 3,433,776 (-)NCBI
Rnor_5.038,736,053 - 8,796,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233674   ⟹   XP_006233736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,206,381 (-)NCBI
mRatBN7.238,746,176 - 8,806,067 (-)NCBI
Rnor_6.033,373,971 - 3,433,776 (-)NCBI
Rnor_5.038,736,053 - 8,796,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233675   ⟹   XP_006233737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,206,381 (-)NCBI
mRatBN7.238,746,176 - 8,806,067 (-)NCBI
Rnor_6.033,373,971 - 3,433,776 (-)NCBI
Rnor_5.038,736,053 - 8,796,109 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104722   ⟹   XP_038960650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,206,380 (-)NCBI
mRatBN7.238,746,176 - 8,805,966 (-)NCBI
RefSeq Acc Id: XM_039104723   ⟹   XP_038960651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,183,801 (-)NCBI
mRatBN7.238,746,176 - 8,785,668 (-)NCBI
RefSeq Acc Id: XM_063283467   ⟹   XP_063139537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,144,318 - 29,206,381 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001162021   ⟸   NM_001168549
- Peptide Label: isoform 1
- UniProtKB: D3Z8E6 (UniProtKB/Swiss-Prot),   A0A0G2K5T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233737   ⟸   XM_006233675
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GHB0 (UniProtKB/TrEMBL),   A0A0G2K5T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233736   ⟸   XM_006233674
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K5T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233734   ⟸   XM_006233672
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K5T1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000024163   ⟸   ENSRNOT00000024163
RefSeq Acc Id: ENSRNOP00000073547   ⟸   ENSRNOT00000078020
RefSeq Acc Id: XP_038960650   ⟸   XM_039104722
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K5T1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960651   ⟸   XM_039104723
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K5T1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081912   ⟸   ENSRNOT00000099628
RefSeq Acc Id: ENSRNOP00000088653   ⟸   ENSRNOT00000101799
RefSeq Acc Id: NP_001402616   ⟸   NM_001415687
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZW13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139537   ⟸   XM_063283467
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZW13 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)   CKK

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8E6-F1-model_v2 AlphaFold D3Z8E6 1-1604 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691894
Promoter ID:EPDNEW_R2419
Type:initiation region
Name:Camsap1_1
Description:calmodulin regulated spectrin-associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.033,434,000 - 3,434,060EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565022 AgrOrtholog
BioCyc Gene G2FUF-50408 BioCyc
Ensembl Genes ENSRNOG00000017883 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024163 ENTREZGENE
  ENSRNOT00000024163.8 UniProtKB/Swiss-Prot
  ENSRNOT00000078020.2 UniProtKB/TrEMBL
  ENSRNOT00000099628 ENTREZGENE
  ENSRNOT00000099628.1 UniProtKB/TrEMBL
  ENSRNOT00000101799.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CAMSAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAMSAP_CC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAMSAP_CH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CKK_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CKK_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRC_barrel-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:296580 UniProtKB/Swiss-Prot
NCBI Gene 296580 ENTREZGENE
PANTHER CALMODULIN-REGULATED SPECTRIN-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21595 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CAMSAP_CC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAMSAP_CH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CAMSAP_CKK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Camsap1 PhenoGen
PROSITE CKK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017883 RatGTEx
SMART CAMSAP_CKK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50346 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K5T1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZW13 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHB0 ENTREZGENE, UniProtKB/TrEMBL
  CAMP1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Camsap1  calmodulin regulated spectrin-associated protein 1  RGD1565022_predicted  similar to calmodulin regulated spectrin-associated protein 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565022_predicted  similar to calmodulin regulated spectrin-associated protein 1 (predicted)  LOC296580  similar to calmodulin regulated spectrin-associated protein 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC296580  similar to calmodulin regulated spectrin-associated protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL